Amy Berger, MD, PhD

Title(s)Attending Physician, Medicine
SchoolSchool of Medicine
Address505 Parnassus Avenue, #001
San Francisco CA 94117
Phone415-502-3693
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    Collapse Biography 
    Collapse Education and Training
    Stanford UniversityBS2002Biological Sciences
    University of California, San FranciscoMD, PhD2012PhD in Neuroscience
    University of California, San FranciscoResidency2016Internal Medicine
    University of California, San FranciscoFellowship2017Academic Hospital Medicine
    University of California, San FranciscoFellowship2017Clinical and Translational Science

    Collapse Overview 
    Collapse Overview
    I am a physician-scientist who enjoys working at the intersection of multiple areas of medicine and science. I am interested in physician-scientist training, the application of pathophysiology to clinical reasoning, and the translation of cutting edge technologies to the clinic.

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Cell-Type Specificity of Mosaic Chromosome 1q Gain Resolved by snRNA-seq in a Case of Epilepsy With Hyaline Protoplasmic Astrocytopathy. Neurol Genet. 2024 Apr; 10(2):e200142. Leng K, Cadwell CR, Devine WP, Tihan T, Qi Z, Singhal NS, Glenn OA, Kamiya S, Wiita AP, Berger AC, Shieh JT, Titus EW, Paredes MF, Upadhyay V. PMID: 38586598; PMCID: PMC10997208.
      View in: PubMed   Mentions:
    2. Alterations in Lysosomal, Glial and Neurodegenerative Biomarkers in Patients with Sporadic and Genetic Forms of Frontotemporal Dementia. bioRxiv. 2024 Feb 12. Hsiao-Nakamoto J, Chiu CL, VandeVrede L, Ravi R, Vandenberg B, De Groot J, Tsogtbaatar B, Fang M, Auger P, Gould NS, Marchioni F, Powers CA, Davis SS, Suh JH, Alkabsh J, Heuer HW, Lago AL, Scearce-Levie K, Seeley WW, Boeve BF, Rosen HJ, Berger A, Tsai R, Di Paolo G, Boxer AL, Bhalla A, Huang F, ALLFTD Consortium. PMID: 38405775; PMCID: PMC10888909.
      View in: PubMed   Mentions:
    3. Cell type specificity of mosaic chromosome 1q gain resolved by snRNA-seq in a case of epilepsy with hyaline protoplasmic astrocytopathy. bioRxiv. 2024 Jan 25. Leng K, Cadwell CR, Patrick Devine W, Tihan T, Qi Z, Singhal N, Glenn O, Kamiya S, Wiita A, Berger A, Shieh JT, Titus EW, Paredes MF, Upadhyay V. PMID: 38328093; PMCID: PMC10849466.
      View in: PubMed   Mentions:
    4. Complement Factor I Gene Variant as a Treatable Cause of Recurrent Aseptic Neutrophilic Meningitis: A Case Report. Neurol Neuroimmunol Neuroinflamm. 2023 09; 10(5). Rolfes M, Harroud A, Zorn KC, Tubati A, Omura C, Kurtz K, Matloubian M, Berger A, Chiu CY, Wilson MR, Ramachandran PS. PMID: 37339889; PMCID: PMC10282980.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. Implementation of Clinical Practice Guidelines for Hospitalized Patients With COVID-19 in Academic Medical Centers. JAMA Netw Open. 2022 04 01; 5(4):e225657. Berger AC, Simchoni N, Auerbach A, Brode WM, Kuperman E, Raffel K, Kubey A, HOMERuN COVID-19 Collaborative Group. PMID: 35377428; PMCID: PMC8980917.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids. Nat Med. 2021 01; 27(1):115-124. Gu W, Deng X, Lee M, Sucu YD, Arevalo S, Stryke D, Federman S, Gopez A, Reyes K, Zorn K, Sample H, Yu G, Ishpuniani G, Briggs B, Chow ED, Berger A, Wilson MR, Wang C, Hsu E, Miller S, DeRisi JL, Chiu CY. PMID: 33169017; PMCID: PMC9020267.
      View in: PubMed   Mentions: 212     Fields:    Translation:HumansAnimalsCells
    7. Rosai-Dorfman as a clinical mimicker of relapsing polychondritis. Journal of the American Academy of Dermatology Case Reports. 2020; Article in Press. Song E, Pincus L, Berger A, Butrymowicz A, Haemel A.
    8. The Molecular Medicine Investigation Unit: Linking Patient Care and Scientific Inquiry in Physician-Scientist Training. J Grad Med Educ. 2020 Feb; 12(1):92-97. Berger A, Matloubian M, Shah NP, Wachter RM, DeRisi JL, Anderson M. PMID: 32089799; PMCID: PMC7012512.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. Elastase 3B mutation links to familial pancreatitis with diabetes and pancreatic adenocarcinoma. J Clin Invest. 2019 08 01; 129(11):4676-4681. Moore PC, Cortez JT, Chamberlain CE, Alba D, Berger AC, Quandt Z, Chan A, Cheng MH, Bautista JL, Peng J, German MS, Anderson MS, Oakes SA. PMID: 31369399; PMCID: PMC6819098.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    10. Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis. N Engl J Med. 2019 06 13; 380(24):2327-2340. Wilson MR, Sample HA, Zorn KC, Arevalo S, Yu G, Neuhaus J, Federman S, Stryke D, Briggs B, Langelier C, Berger A, Douglas V, Josephson SA, Chow FC, Fulton BD, DeRisi JL, Gelfand JM, Naccache SN, Bender J, Dien Bard J, Murkey J, Carlson M, Vespa PM, Vijayan T, Allyn PR, Campeau S, Humphries RM, Klausner JD, Ganzon CD, Memar F, Ocampo NA, Zimmermann LL, Cohen SH, Polage CR, DeBiasi RL, Haller B, Dallas R, Maron G, Hayden R, Messacar K, Dominguez SR, Miller S, Chiu CY. PMID: 31189036; PMCID: PMC6764751.
      View in: PubMed   Mentions: 351     Fields:    Translation:HumansCTClinical Trials
    11. Morphine-induced mu opioid receptor trafficking enhances reward yet prevents compulsive drug use. EMBO Mol Med. 2011 Jul; 3(7):385-97. Berger AC, Whistler JL. PMID: 21656686; PMCID: PMC3394511.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimals
    12. How to design an opioid drug that causes reduced tolerance and dependence. Ann Neurol. 2010 May; 67(5):559-69. Berger AC, Whistler JL. PMID: 20437553; PMCID: PMC2943346.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    13. Morphine-induced receptor endocytosis in a novel knockin mouse reduces tolerance and dependence. Curr Biol. 2008 Jan 22; 18(2):129-35. Kim JA, Bartlett S, He L, Nielsen CK, Chang AM, Kharazia V, Waldhoer M, Ou CJ, Taylor S, Ferwerda M, Cado D, Whistler JL. PMID: 18207746; PMCID: PMC2997702.
      View in: PubMed   Mentions: 56     Fields:    Translation:Animals
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