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    Barak Raveh, PhD

    TitlePostdoctoral Scholar
    SchoolUCSF School of Pharmacy
    DepartmentBioengineering
    Address1700 4th Street
    San Francisco CA 94158
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      Collapse Overview
      NPCs dot the nuclear envelope of every eukaryotic cells and form a selective barrier for molecular transport between the cytoplasm and the nucleus. In my research, I am working to create a data-driven model of transport through nuclear pore complexes (NPCs). For this end, I am developing and applying tools for modeling spatio-temporal systems based on multiple sources of experimental data, at multiple levels of spatial and temporal resolutions.


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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Raveh B, Karp JM, Sparks S, Dutta K, Rout MP, Sali A, Cowburn D. Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex. Proc Natl Acad Sci U S A. 2016 May 3; 113(18):E2489-97. PMID: 27091992.
        View in: PubMed
      2. Alam N, Lavi A, London N, Raveh B, Kozakov D, Schueler-Furman O. 180 Towards the high-resolution, ab initio modeling of peptide-mediated interactions. J Biomol Struct Dyn. 2015; 33 Suppl 1:117-8. PMID: 26103390.
        View in: PubMed
      3. Raveh B. A backdoor to the nucleus that runs in the family? Structure. 2014 Dec 2; 22(12):1693-4. PMID: 25470426.
        View in: PubMed
      4. Webb B, Lasker K, Velázquez-Muriel J, Schneidman-Duhovny D, Pellarin R, Bonomi M, Greenberg C, Raveh B, Tjioe E, Russel D, Sali A. Modeling of proteins and their assemblies with the Integrative Modeling Platform. Methods Mol Biol. 2014; 1091:277-95. PMID: 24203340.
        View in: PubMed
      5. London N, Raveh B, Schueler-Furman O. Druggable protein-protein interactions--from hot spots to hot segments. Curr Opin Chem Biol. 2013 Dec; 17(6):952-9. PMID: 24183815.
        View in: PubMed
      6. London N, Raveh B, Schueler-Furman O. Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how. Curr Opin Struct Biol. 2013 Dec; 23(6):894-902. PMID: 24138780.
        View in: PubMed
      7. London N, Raveh B, Schueler-Furman O. Modeling peptide-protein interactions. Methods Mol Biol. 2012; 857:375-98. PMID: 22323231.
        View in: PubMed
      8. London N, Raveh B, Cohen E, Fathi G, Schueler-Furman O. Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions. Nucleic Acids Res. 2011 Jul; 39(Web Server issue):W249-53. PMID: 21622962; PMCID: PMC3125795.
      9. Raveh B, London N, Zimmerman L, Schueler-Furman O. Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors. PLoS One. 2011; 6(4):e18934. PMID: 21572516; PMCID: PMC3084719.
      10. Buch I, Fishelovitch D, London N, Raveh B, Wolfson HJ, Nussinov R. Allosteric regulation of glycogen synthase kinase 3ß: a theoretical study. Biochemistry. 2010 Dec 28; 49(51):10890-901. PMID: 21105670; PMCID: PMC3005830.
      11. London N, Raveh B, Movshovitz-Attias D, Schueler-Furman O. Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions? Proteins. 2010 Nov 15; 78(15):3140-9. PMID: 20607702; PMCID: PMC2952690.
      12. Crawley SW, Gharaei MS, Ye Q, Yang Y, Raveh B, London N, Schueler-Furman O, Jia Z, Côté GP. Autophosphorylation activates Dictyostelium myosin II heavy chain kinase A by providing a ligand for an allosteric binding site in the alpha-kinase domain. J Biol Chem. 2011 Jan 28; 286(4):2607-16. PMID: 21071445; PMCID: PMC3024756.
      13. Raveh B, London N, Schueler-Furman O. Sub-angstrom modeling of complexes between flexible peptides and globular proteins. Proteins. 2010 Jul; 78(9):2029-40. PMID: 20455260.
        View in: PubMed
      14. Raveh B, Enosh A, Schueler-Furman O, Halperin D. Rapid sampling of molecular motions with prior information constraints. PLoS Comput Biol. 2009 Feb; 5(2):e1000295. PMID: 19247429; PMCID: PMC2637990.
      15. Enosh A, Raveh B, Furman-Schueler O, Halperin D, Ben-Tal N. Generation, comparison, and merging of pathways between protein conformations: gating in K-channels. Biophys J. 2008 Oct; 95(8):3850-60. PMID: 18621834; PMCID: PMC2553149.
      16. Babor M, Gerzon S, Raveh B, Sobolev V, Edelman M. Prediction of transition metal-binding sites from apo protein structures. Proteins. 2008 Jan 1; 70(1):208-17. PMID: 17657805.
        View in: PubMed
      17. Raveh B, Rahat O, Basri R, Schreiber G. Rediscovering secondary structures as network motifs--an unsupervised learning approach. Bioinformatics. 2007 Jan 15; 23(2):e163-9. PMID: 17237086.
        View in: PubMed
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