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    Chao Chen, PhD

    TitlePostdoctoral Scholar
    SchoolUCSF School of Medicine
    DepartmentPhysiology
    Address1550 Fourth St
    San Francisco CA 94158
    Phone415-476-0421
    vCardDownload vCard

      Collapse Bibliographic 
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Hsiao ST, Chuang SC, Chen KS, Ho PH, Wu CL, Chen CA. DNA barcoding reveals that the common cupped oyster in Taiwan is the Portuguese oyster Crassostrea angulata (Ostreoida; Ostreidae), not C. gigas. Sci Rep. 2016 Sep 26; 6:34057. PMID: 27666088.
        View in: PubMed
      2. Arrigoni R, Berumen ML, Chen CA, Terraneo TI, Baird AH, Payri C, Benzoni F. Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species. Mol Phylogenet Evol. 2016 Dec; 105:146-59. PMID: 27593164.
        View in: PubMed
      3. Ribas-Deulofeu L, Denis V, De Palmas S, Kuo CY, Hsieh HJ, Chen CA. Structure of Benthic Communities along the Taiwan Latitudinal Gradient. PLoS One. 2016; 11(8):e0160601. PMID: 27513665.
        View in: PubMed
      4. Wang JT, Hsu CM, Kuo CY, Meng PJ, Kao SJ, Chen CA. Physiological outperformance at the morphologically-transformed edge of the cyanobacteriosponge Terpios hoshinota (Suberitidae: Hadromerida) when confronting opponent corals. PLoS One. 2015; 10(6):e0131509. PMID: 26110525; PMCID: PMC4481517.
      5. Hsu CM, de Palmas S, Kuo CY, Denis V, Chen CA. Identification of scleractinian coral recruits using fluorescent censusing and DNA barcoding techniques. PLoS One. 2014; 9(9):e107366. PMID: 25211345; PMCID: PMC4161427.
      6. Keshavmurthy S, Fontana S, Mezaki T, González Ldel C, Chen CA. Doors are closing on early development in corals facing climate change. Sci Rep. 2014; 4:5633. PMID: 25005591.
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      7. Lin MF, Kitahara MV, Luo H, Tracey D, Geller J, Fukami H, Miller DJ, Chen CA. Mitochondrial genome rearrangements in the scleractinia/corallimorpharia complex: implications for coral phylogeny. Genome Biol Evol. 2014 May; 6(5):1086-95. PMID: 24769753; PMCID: PMC4040992.
      8. Kitahara MV, Lin MF, Forêt S, Huttley G, Miller DJ, Chen CA. The "naked coral" hypothesis revisited--evidence for and against scleractinian monophyly. PLoS One. 2014; 9(4):e94774. PMID: 24740380; PMCID: PMC3989238.
      9. Keshavmurthy S, Meng PJ, Wang JT, Kuo CY, Yang SY, Hsu CM, Gan CH, Dai CF, Chen CA. Can resistant coral-Symbiodinium associations enable coral communities to survive climate change? A study of a site exposed to long-term hot water input. PeerJ. 2014; 2:e327. PMID: 24765567; PMCID: PMC3994648.
      10. Liu SY, Chan CL, Lin O, Hu CS, Chen CA. DNA barcoding of shark meats identify species composition and CITES-listed species from the markets in Taiwan. PLoS One. 2013; 8(11):e79373. PMID: 24260209; PMCID: PMC3832526.
      11. Woo S, Lee A, Denis V, Chen CA, Yum S. Transcript response of soft coral (Scleronephthya gracillimum) on exposure to polycyclic aromatic hydrocarbons. Environ Sci Pollut Res Int. 2014 Jan; 21(2):901-10. PMID: 23832774.
        View in: PubMed
      12. Wen CK, Chen KS, Hsieh HJ, Hsu CM, Chen CA. High coral cover and subsequent high fish richness on mature breakwaters in Taiwan. Mar Pollut Bull. 2013 Jul 15; 72(1):55-63. PMID: 23711840.
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      13. Feary DA, Burt JA, Bauman AG, Al Hazeem S, Abdel-Moati MA, Al-Khalifa KA, Anderson DM, Amos C, Baker A, Bartholomew A, Bento R, Cavalcante GH, Chen CA, Coles SL, Dab K, Fowler AM, George D, Grandcourt E, Hill R, John DM, Jones DA, Keshavmurthy S, Mahmoud H, Moradi Och Tapeh M, Mostafavi PG, Naser H, Pichon M, Purkis S, Riegl B, Samimi-Namin K, Sheppard C, Vajed Samiei J, Voolstra CR, Wiedenmann J. Critical research needs for identifying future changes in Gulf coral reef ecosystems. Mar Pollut Bull. 2013 Jul 30; 72(2):406-16. PMID: 23643407; PMCID: PMC4118590.
      14. Denis V, Mezaki T, Tanaka K, Kuo CY, De Palmas S, Keshavmurthy S, Chen CA. Coverage, diversity, and functionality of a high-latitude coral community (Tatsukushi, Shikoku Island, Japan). PLoS One. 2013; 8(1):e54330. PMID: 23342135; PMCID: PMC3544760.
      15. Keshavmurthy S, Yang SY, Alamaru A, Chuang YY, Pichon M, Obura D, Fontana S, De Palmas S, Stefani F, Benzoni F, MacDonald A, Noreen AM, Chen C, Wallace CC, Pillay RM, Denis V, Amri AY, Reimer JD, Mezaki T, Sheppard C, Loya Y, Abelson A, Mohammed MS, Baker AC, Mostafavi PG, Suharsono BA, Chen CA. DNA barcoding reveals the coral "laboratory-rat", Stylophora pistillata encompasses multiple identities. Sci Rep. 2013; 3:1520. PMID: 23519209; PMCID: PMC3605610.
      16. Fontana S, Keshavmurthy S, Hsieh HJ, Denis V, Kuo CY, Hsu CM, Leung JK, Tsai WS, Wallace CC, Chen CA. Molecular evidence shows low species diversity of coral-associated hydroids in Acropora corals. PLoS One. 2012; 7(11):e50130. PMID: 23209655; PMCID: PMC3510231.
      17. Wang JT, Chen YY, Tew KS, Meng PJ, Chen CA. Physiological and biochemical performances of menthol-induced aposymbiotic corals. PLoS One. 2012; 7(9):e46406. PMID: 23029512; PMCID: PMC3459915.
      18. Kuo CY, Yuen YS, Meng PJ, Ho PH, Wang JT, Liu PJ, Chang YC, Dai CF, Fan TY, Lin HJ, Baird AH, Chen CA. Recurrent disturbances and the degradation of hard coral communities in Taiwan. PLoS One. 2012; 7(8):e44364. PMID: 22952967; PMCID: PMC3431363.
      19. Keshavmurthy S, Hsu CM, Kuo CY, Meng PJ, Wang JT, Chen CA. Symbiont communities and host genetic structure of the brain coral Platygyra verweyi, at the outlet of a nuclear power plant and adjacent areas. Mol Ecol. 2012 Sep; 21(17):4393-407. PMID: 22809041.
        View in: PubMed
      20. Lin MF, Kitahara MV, Tachikawa H, Fukami H, Miller DJ, Chen CA. Novel organization of the mitochondrial genome in the deep-sea coral, Madrepora oculata (Hexacorallia, Scleractinia, Oculinidae) and its taxonomic implications. Mol Phylogenet Evol. 2012 Oct; 65(1):323-8. PMID: 22760028.
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      21. Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM. Corallomonas stylophorae gen. nov., sp. nov., a halophilic bacterium isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol. 2013 Mar; 63(Pt 3):982-8. PMID: 22685102.
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      22. Yang SY, Keshavmurthy S, Obura D, Sheppard CR, Visram S, Chen CA. Diversity and distribution of symbiodinium associated with seven common coral species in the Chagos Archipelago, central Indian Ocean. PLoS One. 2012; 7(5):e35836. PMID: 22567113; PMCID: PMC3342320.
      23. Huang YC, Huang SC, Meng PJ, Hsieh HJ, Chen CA. Influence of strong monsoon winds on the water quality around a marine cage-culture zone in a shallow and semi-enclosed bay in Taiwan. Mar Pollut Bull. 2012 Apr; 64(4):851-60. PMID: 22306313.
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      24. Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM. Oceanicaulis stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol. 2012 Sep; 62(Pt 9):2241-6. PMID: 22081721.
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      25. Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM. Idiomarina aquimaris sp. nov., isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol. 2012 Jul; 62(Pt 7):1536-42. PMID: 21856977.
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      26. Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM. Roseivivax isoporae sp. nov., isolated from a reef-building coral, and emended description of the genus Roseivivax. Int J Syst Evol Microbiol. 2012 Jun; 62(Pt 6):1259-64. PMID: 21764981.
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      27. Tang SL, Hong MJ, Liao MH, Jane WN, Chiang PW, Chen CB, Chen CA. Bacteria associated with an encrusting sponge (Terpios hoshinota) and the corals partially covered by the sponge. Environ Microbiol. 2011 May; 13(5):1179-91. PMID: 21265978.
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      28. Chen CP, Tseng CH, Chen CA, Tang SL. The dynamics of microbial partnerships in the coral Isopora palifera. ISME J. 2011 Apr; 5(4):728-40. PMID: 20962876; PMCID: PMC3105734.
      29. Sheu SY, Jiang SR, Chen CA, Wang JT, Chen WM. Paracoccus stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol. 2011 Sep; 61(Pt 9):2221-6. PMID: 20935084.
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      30. Sheu SY, Jiang SR, Chen CA, Wang JT, Chen WM. Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol. 2011 Sep; 61(Pt 9):2180-5. PMID: 20935089.
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      31. Chen MH, Sheu SY, Arun AB, Young CC, Chen CA, Wang JT, Chen WM. Pseudoteredinibacter isoporae gen. nov., sp. nov., a marine bacterium isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol. 2011 Aug; 61(Pt 8):1887-93. PMID: 20833889.
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      32. Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM. Paracoccus isoporae sp. nov., isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol. 2011 May; 61(Pt 5):1138-43. PMID: 20543151.
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      33. Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM. Shimia isoporae sp. nov., isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol. 2011 Apr; 61(Pt 4):823-7. PMID: 20453104.
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      34. Hong MJ, Yu YT, Chen CA, Chiang PW, Tang SL. Influence of species specificity and other factors on bacteria associated with the coral Stylophora pistillata in Taiwan. Appl Environ Microbiol. 2009 Dec; 75(24):7797-806. PMID: 19854921; PMCID: PMC2794093.
      35. Yang CS, Chen MH, Arun AB, Chen CA, Wang JT, Chen WM. Endozoicomonas montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata. Int J Syst Evol Microbiol. 2010 May; 60(Pt 5):1158-62. PMID: 19666790.
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      36. Chou JH, Chou YJ, Arun AB, Young CC, Chen CA, Wang JT, Chen WM. Vogesella lacus sp. nov., isolated from a soft-shell turtle culture pond. Int J Syst Evol Microbiol. 2009 Oct; 59(Pt 10):2629-32. PMID: 19625439.
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      37. Sheu SY, Chiu TF, Cho NT, Chou JH, Sheu DS, Arun AB, Young CC, Chen CA, Wang JT, Chen WM. Flectobacillus roseus sp. nov., isolated from freshwater in Taiwan. Int J Syst Evol Microbiol. 2009 Oct; 59(Pt 10):2546-51. PMID: 19622645.
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      38. Sheu SY, Chiu TF, Chou JH, Sheu DS, Arun AB, Young CC, Chen CA, Wang JT, Chen WM. Andreprevotia lacus sp. nov., isolated from a fish-culture pond. Int J Syst Evol Microbiol. 2009 Oct; 59(Pt 10):2482-5. PMID: 19622669.
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      39. Fukami H, Chen CA, Budd AF, Collins A, Wallace C, Chuang YY, Chen C, Dai CF, Iwao K, Sheppard C, Knowlton N. Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria). PLoS One. 2008; 3(9):e3222. PMID: 18795098; PMCID: PMC2528942.
      40. Gan CH, Tee SM, Tang PC, Yang JM, Freire F, McGowan A, Narriman J, Mohammed MS, Hsieh HL, Chen CP, Sheppard C, Chen CA. Isolation and characteristics of 10 microsatellite markers from the endangered coconut crab (Birgus latro). Mol Ecol Resour. 2008 Nov; 8(6):1448-50. PMID: 21586072.
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      41. Chen IP, Tang CY, Chiou CY, Hsu JH, Wei NV, Wallace CC, Muir P, Wu H, Chen CA. Comparative analyses of coding and noncoding DNA regions indicate that Acropora (Anthozoa: Scleractina) possesses a similar evolutionary tempo of nuclear vs. mitochondrial genomes as in plants. Mar Biotechnol (NY). 2009 Jan-Feb; 11(1):141-52. PMID: 18670809.
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      42. Chen C, Chiou CY, Dai CF, Chen CA. Unique mitogenomic features in the scleractinian family pocilloporidae (scleractinia: astrocoeniina). Mar Biotechnol (NY). 2008 Sep-Oct; 10(5):538-53. PMID: 18478295.
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      43. Wang JT, Chou YJ, Chou JH, Chen CA, Chen WM. Tenacibaculum aiptasiae sp. nov., isolated from a sea anemone Aiptasia pulchella. Int J Syst Evol Microbiol. 2008 Apr; 58(Pt 4):761-6. PMID: 18398166.
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      44. Chiou CY, Chen IP, Chen C, Wu HJ, Wei NV, Wallace CC, Chen CA. Analysis of Acropora muricata calmodulin (CaM) indicates that scleractinian corals possess the ancestral exon/intron organization of the eumetazoan CaM gene. J Mol Evol. 2008 Apr; 66(4):317-24. PMID: 18322634.
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      45. Chen C, Dai CF, Plathong S, Chiou CY, Chen CA. The complete mitochondrial genomes of needle corals, Seriatopora spp. (Scleractinia: Pocilloporidae): an idiosyncratic atp8, duplicated trnW gene, and hypervariable regions used to determine species phylogenies and recently diverged populations. Mol Phylogenet Evol. 2008 Jan; 46(1):19-33. PMID: 18042404.
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      46. Fukami H, Chen CA, Chiou CY, Knowlton N. Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of Scleractinian corals. J Mol Evol. 2007 May; 64(5):591-600. PMID: 17437148.
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      47. Yang MC, Chen CA, Hsieh HL, Chen CP. Population subdivision of the tri-spine horseshoe crab, Tachypleus tridentatus, in Taiwan Strait. Zoolog Sci. 2007 Mar; 24(3):219-24. PMID: 17551241.
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      48. Hung YT, Chen CA, Wu WJ, Lin CC, Shih CJ. Phylogenetic utility of the ribosomal internal transcribed spacer 2 in Strumigenys spp. (Hymenoptera: Formicidae). Mol Phylogenet Evol. 2004 Jul; 32(1):407-15. PMID: 15186825.
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      49. Chen CA, Ablan MC, McManus JW, Bell JD, Tuan VS, Cabanban AS, Shao KT. Population structure and genetic variability of six bar wrasse (Thallasoma hardwicki) in northern South China Sea revealed by mitochondrial control region sequences. Mar Biotechnol (NY). 2004 Jul-Aug; 6(4):312-26. PMID: 15129326.
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      50. Hwang SP, Wu JY, Chen CA, Hui CF, Chen CP. Novel pattern of AtXlox gene expression in starfish Archaster typicus embryos. Dev Growth Differ. 2003 Feb; 45(1):85-93. PMID: 12630949.
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      51. Chen CA, Wallace CC, Wolstenholme J. Analysis of the mitochondrial 12S rRNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals. Mol Phylogenet Evol. 2002 May; 23(2):137-49. PMID: 12069546.
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      52. Lin SM, Chen CA, Lue KY. Molecular phylogeny and biogeography of the grass lizards genus Takydromus (Reptilia: Lacertidae) of East Asia. Mol Phylogenet Evol. 2002 Feb; 22(2):276-88. PMID: 11820848.
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      53. Chen CA, Chen CP, Fan TY, Yu JK, Hsieh HL. Nucleotide sequences of ribosomal internal transcribed spacers and their utility in distinguishing closely related Perinereis polychaets (Annelida; Polychaeta; Nereididae). Mar Biotechnol (NY). 2002 Jan; 4(1):17-29. PMID: 14961285.
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