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    Jerome Francis Michel Bouquet, PhD

    TitlePostdoctoral Scholar
    SchoolUCSF School of Medicine
    DepartmentLaboratory Medicine
    Address185 Berry Street Bldg B
    San Francisco CA 94158
    Phone415-353-8383
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      Collapse Biography 
      Collapse Education and Training
      University Pierre et Marie Curie, ParisPhDVirology2012
      National Institute of Applied Sciences, ToulouseM.S.Microbiology2009
      National Institute of Applied Sciences, ToulouseM.Eng.Biochemistry2008
      Collapse Awards and Honors
      Bay Area Lyme Foundation2014 - 2015Emerging Leader Award

      Collapse Overview 
      Collapse Interests
      Infectious diseases, Genomics, Transcriptomics, Next generation sequencing, Virology, Tick-borne diseases, Pathogen discovery

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Bouquet J, Soloski MJ, Swei A, Cheadle C, Federman S, Billaud JN, Rebman AW, Kabre B, Halpert R, Boorgula M, Aucott JN, Chiu CY. Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease. MBio. 2015; 7(1). PMID: 26873097.
        View in: PubMed
      2. Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Dominguez SR, Chiu CY. Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Med. 2016; 8(1):1. PMID: 26750923.
        View in: PubMed
      3. Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Klenschmidt-DeMasters BK, Dominguez SR, Chiu CY. Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Med. 2015; 7(1):113. PMID: 26620704; PMCID: PMC4665321.
      4. Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, Chiu CY. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Med. 2015; 7(1):99. PMID: 26416663; PMCID: PMC4587849.
      5. Rogée S, Le Gall M, Chafey P, Bouquet J, Cordonnier N, Frederici C, Pavio N. Quantitative proteomics identifies host factors modulated during acute hepatitis E virus infection in the swine model. J Virol. 2015 Jan; 89(1):129-43. PMID: 25320303; PMCID: PMC4301096.
      6. Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J, Miller S, Chiu CY. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Res. 2014 Jul; 24(7):1180-92. PMID: 24899342; PMCID: PMC4079973.
      7. Rogée S, Talbot N, Caperna T, Bouquet J, Barnaud E, Pavio N. New models of hepatitis E virus replication in human and porcine hepatocyte cell lines. J Gen Virol. 2013 Mar; 94(Pt 3):549-58. PMID: 23175242.
        View in: PubMed
      8. Bouquet J, Cherel P, Pavio N. Genetic characterization and codon usage bias of full-length Hepatitis E virus sequences shed new lights on genotypic distribution, host restriction and genome evolution. Infect Genet Evol. 2012 Dec; 12(8):1842-53. PMID: 22951575.
        View in: PubMed
      9. Bouquet J, Cheval J, Rogée S, Pavio N, Eloit M. Identical consensus sequence and conserved genomic polymorphism of hepatitis E virus during controlled interspecies transmission. J Virol. 2012 Jun; 86(11):6238-45. PMID: 22457521; PMCID: PMC3372222.
      10. Bouquet J, Rivaud M, Chevalley S, Deharo E, Jullian V, Valentin A. Biological activities of nitidine, a potential anti-malarial lead compound. Malar J. 2012; 11:67. PMID: 22404785; PMCID: PMC3325168.
      11. Bouquet J, Tessé S, Lunazzi A, Eloit M, Rose N, Nicand E, Pavio N. Close similarity between sequences of hepatitis E virus recovered from humans and swine, France, 2008-2009. Emerg Infect Dis. 2011 Nov; 17(11):2018-25. PMID: 22099089; PMCID: PMC3311115.
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