Jj Miranda, PhD

TitleAssistant Professor
SchoolUCSF School of Medicine
DepartmentCellular Molecular Pharmacology
Address600 16th St
San Francisco CA 94158
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    Collapse Biography 
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    Reed CollegeBA2001
    Harvard UniversityPhD2007

    Collapse Research 
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    Topology of the Hosthogen Genome
    NIH/NIAID R21AI108597Aug 1, 2014 - Jul 31, 2016
    Role: Principal Investigator
    Topology of the Hosthogen Genome
    NIH/NIAID R21AI108597Aug 1, 2014 - Jul 31, 2016
    Role: Principal Investigator

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    Collapse Selected Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Phan AT, Fernandez SG, Somberg JJ, Keck KM, Miranda J. Epstein-Barr virus latency type and spontaneous reactivation predict lytic induction levels. Biochem Biophys Res Commun. 2016 May 20; 474(1):71-5. PMID: 27091426.
      View in: PubMed
    2. Fernandez SG, Miranda J. Bendamustine reactivates latent Epstein-Barr virus. Leuk Lymphoma. 2016 May; 57(5):1208-10. PMID: 26371746.
      View in: PubMed
    3. Holdorf MM, Cooper SB, Yamamoto KR, Miranda JJ. Occupancy of chromatin organizers in the Epstein-Barr virus genome. Virology. 2011 Jun 20; 415(1):1-5. PMID: 21550623; PMCID: PMC3808970.
    4. Cho US, Corbett KD, Al-Bassam J, Bellizzi JJ, De Wulf P, Espelin CW, Miranda JJ, Simons K, Wei RR, Sorger PK, Harrison SC. Molecular structures and interactions in the yeast kinetochore. Cold Spring Harb Symp Quant Biol. 2010; 75:395-401. PMID: 21467141; PMCID: PMC3207249.
    5. Campbell AE, Martinez SR, Miranda JJ. Molecular architecture of CTCFL. Biochem Biophys Res Commun. 2010 Jun 4; 396(3):648-50. PMID: 20438700.
      View in: PubMed
    6. Martinez SR, Miranda JL. CTCF terminal segments are unstructured. Protein Sci. 2010 May; 19(5):1110-6. PMID: 20196073; PMCID: PMC2868253.
    7. Miranda JJ, King DS, Harrison SC. Protein arms in the kinetochore-microtubule interface of the yeast DASH complex. Mol Biol Cell. 2007 Jul; 18(7):2503-10. PMID: 17460120; PMCID: PMC1924804.
    8. Miranda JL. Conservation and diversity of ancient hemoglobins in Bacteria. Biochem Biophys Res Commun. 2006 May 12; 343(3):924-7. PMID: 16574075.
      View in: PubMed
    9. Miranda JJ, Maillett DH, Soman J, Olson JS. Thermoglobin, oxygen-avid hemoglobin in a bacterial hyperthermophile. J Biol Chem. 2005 Nov 4; 280(44):36754-61. PMID: 16135523.
      View in: PubMed
    10. Miranda JJ, De Wulf P, Sorger PK, Harrison SC. The yeast DASH complex forms closed rings on microtubules. Nat Struct Mol Biol. 2005 Feb; 12(2):138-43. PMID: 15640796.
      View in: PubMed
    11. Miranda JJ. Position-dependent interactions between cysteine residues and the helix dipole. Protein Sci. 2003 Jan; 12(1):73-81. PMID: 12493830; PMCID: PMC2312398.
    12. Williams KE, Carver TA, Miranda JJ, Kautiainen A, Vogel JS, Dingley K, Baldwin MA, Turteltaub KW, Burlingame AL. Attomole detection of in vivo protein targets of benzene in mice: evidence for a highly reactive metabolite. Mol Cell Proteomics. 2002 Nov; 1(11):885-95. PMID: 12488464.
      View in: PubMed
    13. Ziegler M, Miranda JJ, Andersen UN, Johnson DW, Leary JA, Raymond KN. Combinatorial Libraries of Metal-Ligand Assemblies with an Encapsulated Guest Molecule Coordination Number Incommensurate Cluster Formation, Part 17. Financial support of this work was provided by NSF CHE-9709621 and a NATO-NSF exchange grant SRG 951516. We thank the Miller Foundation for a fellowship to M.Z. Part 16: R. M. Yeh, M. Ziegler, D. W. Johnson, A. J. Terpin, K. N. Raymond, Inorg. Chem. 2001, in press. Angew Chem Int Ed Engl. 2001 Feb 16; 40(4):733-736. PMID: 11241606.
      View in: PubMed
    14. Miranda JJ. Highly reactive cysteine residues in rodent hemoglobins. Biochem Biophys Res Commun. 2000 Aug 28; 275(2):517-23. PMID: 10964696.
      View in: PubMed
    15. Yu Z, Friso G, Miranda JJ, Patel MJ, Lo-Tseng T, Moore EG, Burlingame AL. Structural characterization of human hemoglobin crosslinked by bis(3,5-dibromosalicyl) fumarate using mass spectrometric techniques. Protein Sci. 1997 Dec; 6(12):2568-77. PMID: 9416606; PMCID: PMC2143614.
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