 Nariman Naber, PhD
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| Title | Research Biochemist |
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| School | UCSF School of Medicine |
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| Department | Biochemistry & Biophysics |
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| Address | MBGH
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| Phone | 415-476-1975 |
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 Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
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Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ. A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Nature. 2013 Apr 18; 496(7445):377-81.
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Eldred CC, Naber N, Pate E, Cooke R, Swank DM. Conformational changes at the nucleotide site in the presence of bound ADP do not set the velocity of fast Drosophila myosins. J Muscle Res Cell Motil. 2013 Feb; 34(1):35-42.
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Waitzman JS, Larson AG, Cochran JC, Naber N, Cooke R, Jon Kull F, Pate E, Rice SE. The loop 5 element structurally and kinetically coordinates dimers of the human kinesin-5, Eg5. Biophys J. 2011 Dec 7; 101(11):2760-9.
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Harrington TD, Naber N, Larson AG, Cooke R, Rice SE, Pate E. Analysis of the interaction of the Eg5 Loop5 with the nucleotide site. J Theor Biol. 2011 Nov 21; 289:107-15.
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Naber N, Cooke R, Pate E. Slow myosin ATP turnover in the super-relaxed state in tarantula muscle. J Mol Biol. 2011 Sep 2; 411(5):943-50.
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Purcell TJ, Naber N, Sutton S, Cooke R, Pate E. EPR spectra and molecular dynamics agree that the nucleotide pocket of myosin V is closed and that it opens on binding actin. J Mol Biol. 2011 Aug 5; 411(1):16-26.
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Naber N, Larson A, Rice S, Cooke R, Pate E. Multiple conformations of the nucleotide site of Kinesin family motors in the triphosphate state. J Mol Biol. 2011 May 13; 408(4):628-42.
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Purcell TJ, Naber N, Franks-Skiba K, Dunn AR, Eldred CC, Berger CL, Málnási-Csizmadia A, Spudich JA, Swank DM, Pate E, Cooke R. Nucleotide pocket thermodynamics measured by EPR reveal how energy partitioning relates myosin speed to efficiency. J Mol Biol. 2011 Mar 18; 407(1):79-91.
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Larson AG, Naber N, Cooke R, Pate E, Rice SE. The conserved L5 loop establishes the pre-powerstroke conformation of the Kinesin-5 motor, eg5. Biophys J. 2010 Jun 2; 98(11):2619-27.
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Naber N, Málnási-Csizmadia A, Purcell TJ, Cooke R, Pate E. Combining EPR with fluorescence spectroscopy to monitor conformational changes at the myosin nucleotide pocket. J Mol Biol. 2010 Mar 5; 396(4):937-48.
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Racki LR, Yang JG, Naber N, Partensky PD, Acevedo A, Purcell TJ, Cooke R, Cheng Y, Narlikar GJ. The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature. 2009 Dec 24; 462(7276):1016-21.
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Basumallick L, Ji JA, Naber N, Wang YJ. The fate of free radicals in a cellulose based hydrogel: detection by electron paramagnetic resonance spectroscopy. J Pharm Sci. 2009 Jul; 98(7):2464-71.
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Wong YL, Dietrich KA, Naber N, Cooke R, Rice SE. The Kinesin-1 tail conformationally restricts the nucleotide pocket. Biophys J. 2009 Apr 8; 96(7):2799-807.
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Thompson AR, Naber N, Wilson C, Cooke R, Thomas DD. Structural dynamics of the actomyosin complex probed by a bifunctional spin label that cross-links SH1 and SH2. Biophys J. 2008 Dec; 95(11):5238-46.
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Naber N, Purcell TJ, Pate E, Cooke R. Dynamics of the nucleotide pocket of myosin measured by spin-labeled nucleotides. Biophys J. 2007 Jan 1; 92(1):172-84.
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Tanaka M, Chien P, Naber N, Cooke R, Weissman JS. Conformational variations in an infectious protein determine prion strain differences. Nature. 2004 Mar 18; 428(6980):323-8.
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Naber N, Minehardt TJ, Rice S, Chen X, Grammer J, Matuska M, Vale RD, Kollman PA, Car R, Yount RG, Cooke R, Pate E. Closing of the nucleotide pocket of kinesin-family motors upon binding to microtubules. Science. 2003 May 2; 300(5620):798-801.
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Naber N, Rice S, Matuska M, Vale RD, Cooke R, Pate E. EPR spectroscopy shows a microtubule-dependent conformational change in the kinesin switch 1 domain. Biophys J. 2003 May; 84(5):3190-6.
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Rice S, Cui Y, Sindelar C, Naber N, Matuska M, Vale R, Cooke R. Thermodynamic properties of the kinesin neck-region docking to the catalytic core. Biophys J. 2003 Mar; 84(3):1844-54.
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Sindelar CV, Budny MJ, Rice S, Naber N, Fletterick R, Cooke R. Two conformations in the human kinesin power stroke defined by X-ray crystallography and EPR spectroscopy. Nat Struct Biol. 2002 Nov; 9(11):844-8.
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Thorn KS, Naber N, Matuska M, Vale RD, Cooke R. A novel method of affinity-purifying proteins using a bis-arsenical fluorescein. Protein Sci. 2000 Feb; 9(2):213-7.
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Rice S, Lin AW, Safer D, Hart CL, Naber N, Carragher BO, Cain SM, Pechatnikova E, Wilson-Kubalek EM, Whittaker M, Pate E, Cooke R, Taylor EW, Milligan RA, Vale RD. A structural change in the kinesin motor protein that drives motility. Nature. 1999 Dec 16; 402(6763):778-84.
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Wilson GJ, Shull SE, Naber NI, Cooke R. Myosin head interactions in Ca2+-activated skinned rabbit skeletal muscle fibers. J Biochem. 1997 Sep; 122(3):563-71.
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Naber N, Cooke R, Pate E. Binding of ncd to microtubules induces a conformational change near the junction of the motor domain with the neck. Biochemistry. 1997 Aug 12; 36(32):9681-9.
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Naber N, Matuska M, Sablin EP, Pate E, Cooke R. A novel adenosine triphosphate analog with a heavy atom to target the nucleotide binding site of proteins. Protein Sci. 1995 Sep; 4(9):1824-31.
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Zhao L, Naber N, Cooke R. Muscle cross-bridges bound to actin are disordered in the presence of 2,3-butanedione monoxime. Biophys J. 1995 May; 68(5):1980-90.
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Naber N, Cooke R. Mobility and orientation of spin probes attached to nucleotides incorporated into actin. Biochemistry. 1994 Apr 5; 33(13):3855-61.
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Carreras CW, Naber N, Cooke R, Santi DV. A C-terminal conformational equilibrium in thymidylate synthase observed by electron paramagnetic resonance spectroscopy. Biochemistry. 1994 Mar 1; 33(8):2071-7.
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Naber N, Lorenz M, Cooke R. The orientation of spin-probes attached to Cys374 on actin in oriented gels. J Mol Biol. 1994 Feb 25; 236(3):703-9.
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Naber N, Ostap EM, Thomas DD, Cooke R. Orientation and rotational dynamics of spin-labeled phalloidin bound to actin in muscle fibers. Proteins. 1993 Dec; 17(4):347-54.
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Naber NI, Hamilton GA. Concerning the mechanism for transfer of D-glucuronate from myo-inositol oxygenase to D-glucuronate reductase. Biochim Biophys Acta. 1987 Feb 25; 911(3):365-8.
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Naber NI, Swan JS, Hamilton GA. L-myo-inosose-1 as a probable intermediate in the reaction catalyzed by myo-inositol oxygenase. Biochemistry. 1986 Nov 4; 25(22):7201-7.
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