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    Nikole Kimes, PhD

    TitlePostdoctoral Scholar
    SchoolUCSF School of Medicine
    Address513 Parnassus Ave, Med Sci
    San Francisco CA 94122
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. López-Pérez M, Kimes NE, Haro-Moreno JM, Rodriguez-Valera F. Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea. Front Microbiol. 2016; 7:996. PMID: 27446036.
        View in: PubMed
      2. Kimes NE, López-Pérez M, Flores-Félix JD, Ramírez-Bahena MH, Igual JM, Peix A, Rodriguez-Valera F, Velázquez E. Pseudorhizobium pelagicum gen. nov., sp. nov. isolated from a pelagic Mediterranean zone. Syst Appl Microbiol. 2015 Jul; 38(5):293-9. PMID: 26078205.
        View in: PubMed
      3. Martin-Cuadrado AB, Garcia-Heredia I, Moltó AG, López-Úbeda R, Kimes N, López-García P, Moreira D, Rodriguez-Valera F. A new class of marine Euryarchaeota group II from the Mediterranean deep chlorophyll maximum. ISME J. 2015 Jul; 9(7):1619-34. PMID: 25535935; PMCID: PMC4478702 [Available on 07/01/16].
      4. Kimes NE, Callaghan AV, Suflita JM, Morris PJ. Microbial transformation of the Deepwater Horizon oil spill-past, present, and future perspectives. Front Microbiol. 2014; 5:603. PMID: 25477866; PMCID: PMC4235408.
      5. Kimes NE, López-Pérez M, Ausó E, Ghai R, Rodriguez-Valera F. RNA sequencing provides evidence for functional variability between naturally co-existing Alteromonas macleodii lineages. BMC Genomics. 2014; 15:938. PMID: 25344729; PMCID: PMC4223743.
      6. Mizuno CM, Rodriguez-Valera F, Kimes NE, Ghai R. Expanding the marine virosphere using metagenomics. PLoS Genet. 2013; 9(12):e1003987. PMID: 24348267; PMCID: PMC3861242.
      7. Mizuno CM, Kimes NE, López-Pérez M, Ausó E, Rodriguez-Valera F, Ghai R. A hybrid NRPS-PKS gene cluster related to the bleomycin family of antitumor antibiotics in Alteromonas macleodii strains. PLoS One. 2013; 8(9):e76021. PMID: 24069455; PMCID: PMC3777966.
      8. Kimes NE, Johnson WR, Torralba M, Nelson KE, Weil E, Morris PJ. The Montastraea faveolata microbiome: ecological and temporal influences on a Caribbean reef-building coral in decline. Environ Microbiol. 2013 Jul; 15(7):2082-94. PMID: 23750924.
        View in: PubMed
      9. Kimes NE, Callaghan AV, Aktas DF, Smith WL, Sunner J, Golding B, Drozdowska M, Hazen TC, Suflita JM, Morris PJ. Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill. Front Microbiol. 2013; 4:50. PMID: 23508965; PMCID: PMC3598227.
      10. López-Pérez M, Gonzaga A, Martin-Cuadrado AB, López-García P, Rodriguez-Valera F, Kimes NE. Intra- and intergenomic variation of ribosomal RNA operons in concurrent Alteromonas macleodii strains. Microb Ecol. 2013 Apr; 65(3):720-30. PMID: 23269455.
        View in: PubMed
      11. Gonzaga A, Martin-Cuadrado AB, López-Pérez M, Megumi Mizuno C, García-Heredia I, Kimes NE, Lopez-García P, Moreira D, Ussery D, Zaballos M, Ghai R, Rodriguez-Valera F. Polyclonality of concurrent natural populations of Alteromonas macleodii. Genome Biol Evol. 2012; 4(12):1360-74. PMID: 23212172; PMCID: PMC3542563.
      12. Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, Munk AC, Tapia R, Green L, Detter C, Bruce DC, Brettin TS, Colwell RR, Morris PJ. Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. ISME J. 2012 Apr; 6(4):835-46. PMID: 22158392; PMCID: PMC3309362.
      13. Vizcaino MI, Johnson WR, Kimes NE, Williams K, Torralba M, Nelson KE, Smith GW, Weil E, Moeller PD, Morris PJ. Antimicrobial resistance of the coral pathogen Vibrio coralliilyticus and Caribbean sister phylotypes isolated from a diseased octocoral. Microb Ecol. 2010 May; 59(4):646-57. PMID: 20309538.
        View in: PubMed
      14. Kimes NE, Van Nostrand JD, Weil E, Zhou J, Morris PJ. Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies. Environ Microbiol. 2010 Feb; 12(2):541-56. PMID: 19958382.
        View in: PubMed
      15. Bamji SX, Rico B, Kimes N, Reichardt LF. BDNF mobilizes synaptic vesicles and enhances synapse formation by disrupting cadherin-beta-catenin interactions. J Cell Biol. 2006 Jul 17; 174(2):289-99. PMID: 16831887; PMCID: PMC2064188.
      16. Rico B, Beggs HE, Schahin-Reed D, Kimes N, Schmidt A, Reichardt LF. Control of axonal branching and synapse formation by focal adhesion kinase. Nat Neurosci. 2004 Oct; 7(10):1059-69. PMID: 15378065; PMCID: PMC2711902.
      17. Bamji SX, Shimazu K, Kimes N, Huelsken J, Birchmeier W, Lu B, Reichardt LF. Role of beta-catenin in synaptic vesicle localization and presynaptic assembly. Neuron. 2003 Nov 13; 40(4):719-31. PMID: 14622577; PMCID: PMC2757419.
      18. Elul TM, Kimes NE, Kohwi M, Reichardt LF. N- and C-terminal domains of beta-catenin, respectively, are required to initiate and shape axon arbors of retinal ganglion cells in vivo. J Neurosci. 2003 Jul 23; 23(16):6567-75. PMID: 12878698; PMCID: PMC2693054.
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