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    Raga Krishnakumar, PhD

    TitlePostdoctoral Scholar
    SchoolUCSF School of Medicine
    DepartmentUrology
    Address35 Medical Center Way
    San Francisco CA 94143
    Phone415-476-2839
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Krishnakumar R, Chen AF, Pantovich MG, Danial M, Parchem RJ, Labosky PA, Blelloch R. FOXD3 Regulates Pluripotent Stem Cell Potential by Simultaneously Initiating and Repressing Enhancer Activity. Cell Stem Cell. 2016 Jan 7; 18(1):104-17. PMID: 26748757.
        View in: PubMed
      2. Parchem RJ, Ye J, Judson RL, LaRussa MF, Krishnakumar R, Blelloch A, Oldham MC, Blelloch R. Two miRNA clusters reveal alternative paths in late-stage reprogramming. Cell Stem Cell. 2014 May 1; 14(5):617-31. PMID: 24630794.
        View in: PubMed
      3. Luo X, Chae M, Krishnakumar R, Danko CG, Kraus WL. Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFa signaling revealed by integrated genomic analyses. BMC Genomics. 2014; 15:155. PMID: 24564208; PMCID: PMC3945043.
      4. Krishnakumar R, Blelloch RH. Epigenetics of cellular reprogramming. Curr Opin Genet Dev. 2013 Oct; 23(5):548-55. PMID: 23948105.
        View in: PubMed
      5. Zhang T, Berrocal JG, Yao J, DuMond ME, Krishnakumar R, Ruhl DD, Ryu KW, Gamble MJ, Kraus WL. Regulation of poly(ADP-ribose) polymerase-1-dependent gene expression through promoter-directed recruitment of a nuclear NAD+ synthase. J Biol Chem. 2012 Apr 6; 287(15):12405-16. PMID: 22334709; PMCID: PMC3320990.
      6. Krishnakumar R, Kraus WL. PARP-1 regulates chromatin structure and transcription through a KDM5B-dependent pathway. Mol Cell. 2010 Sep 10; 39(5):736-49. PMID: 20832725; PMCID: PMC2939044.
      7. Krishnakumar R, Kraus WL. The PARP side of the nucleus: molecular actions, physiological outcomes, and clinical targets. Mol Cell. 2010 Jul 9; 39(1):8-24. PMID: 20603072; PMCID: PMC2923840.
      8. Gamble MJ, Frizzell KM, Yang C, Krishnakumar R, Kraus WL. The histone variant macroH2A1 marks repressed autosomal chromatin, but protects a subset of its target genes from silencing. Genes Dev. 2010 Jan 1; 24(1):21-32. PMID: 20008927; PMCID: PMC2802188.
      9. Frizzell KM, Gamble MJ, Berrocal JG, Zhang T, Krishnakumar R, Cen Y, Sauve AA, Kraus WL. Global analysis of transcriptional regulation by poly(ADP-ribose) polymerase-1 and poly(ADP-ribose) glycohydrolase in MCF-7 human breast cancer cells. J Biol Chem. 2009 Dec 4; 284(49):33926-38. PMID: 19812418; PMCID: PMC2797163.
      10. Zhang T, Berrocal JG, Frizzell KM, Gamble MJ, DuMond ME, Krishnakumar R, Yang T, Sauve AA, Kraus WL. Enzymes in the NAD+ salvage pathway regulate SIRT1 activity at target gene promoters. J Biol Chem. 2009 Jul 24; 284(30):20408-17. PMID: 19478080; PMCID: PMC2740465.
      11. Krishnakumar R, Gamble MJ, Frizzell KM, Berrocal JG, Kininis M, Kraus WL. Reciprocal binding of PARP-1 and histone H1 at promoters specifies transcriptional outcomes. Science. 2008 Feb 8; 319(5864):819-21. PMID: 18258916.
        View in: PubMed
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