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Ray Wang, PhD

TitlePostdoctoral Scholar
SchoolUCSF School of Medicine
DepartmentBiochemistry and Biophysics
Address600 16th Street
San Francisco CA 94158
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Wang R, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F, et al. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta. Elife. 2016 Sep 26; 5. PMID: 27669148.
      View in: PubMed
    2. Verba KA, Wang R, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA. Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Science. 2016 Jun 24; 352(6293):1542-7. PMID: 27339980.
      View in: PubMed
    3. Ovchinnikov S, Kim DE, Wang R, Liu Y, DiMaio F, Baker D. Improved de novo structure prediction in CASP11 by incorporating Co-evolution information into rosetta. Proteins. 2015 Dec 17. PMID: 26677056.
      View in: PubMed
    4. Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nat Methods. 2015 Oct; 12(10):943-6. PMID: 26280328; PMCID: PMC4589481 [Available on 04/01/16].
    5. Blok NB, Tan D, Wang RY, Penczek PA, Baker D, DiMaio F, Rapoport TA, Walz T. Unique double-ring structure of the peroxisomal Pex1/Pex6 ATPase complex revealed by cryo-electron microscopy. Proc Natl Acad Sci U S A. 2015 Jul 28; 112(30):E4017-25. PMID: 26170309; PMCID: PMC4522808 [Available on 01/28/16].
    6. Kudryashev M, Wang RY, Brackmann M, Scherer S, Maier T, Baker D, DiMaio F, Stahlberg H, Egelman EH, Basler M. Structure of the type VI secretion system contractile sheath. Cell. 2015 Feb 26; 160(5):952-62. PMID: 25723169; PMCID: PMC4359589 [Available on 02/26/16].
    7. Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nat Methods. 2015 Apr; 12(4):335-8. PMID: 25707029; PMCID: PMC4435692.
    8. Song Y, DiMaio F, Wang RY, Kim D, Miles C, Brunette T, Thompson J, Baker D. High-resolution comparative modeling with RosettaCM. Structure. 2013 Oct 8; 21(10):1735-42. PMID: 24035711; PMCID: PMC3811137.
    9. Kim DE, Dimaio F, Yu-Ruei Wang R, Song Y, Baker D. One contact for every twelve residues allows robust and accurate topology-level protein structure modeling. Proteins. 2014 Feb; 82 Suppl 2:208-18. PMID: 23900763; PMCID: PMC4128384.
    10. Wang RY, Han Y, Krassovsky K, Sheffler W, Tyka M, Baker D. Modeling disordered regions in proteins using Rosetta. PLoS One. 2011; 6(7):e22060. PMID: 21829444; PMCID: PMC3146542.
    11. Huang WL, Wang YR, Ko TP, Chia CY, Huang KF, Wang AH. Crystal structure and functional analysis of the glutaminyl cyclase from Xanthomonas campestris. J Mol Biol. 2010 Aug 20; 401(3):374-88. PMID: 20558177.
      View in: PubMed
    12. Huang KF, Wang YR, Chang EC, Chou TL, Wang AH. A conserved hydrogen-bond network in the catalytic centre of animal glutaminyl cyclases is critical for catalysis. Biochem J. 2008 Apr 1; 411(1):181-90. PMID: 18072935.
      View in: PubMed
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