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    Ryan Coleman, PhD

    TitlePostdoctoral Scholar
    SchoolUCSF School of Pharmacy
    DepartmentPharmaceutical Chemistry
    Address1700 4th Street
    San Francisco CA 94158

       Overview 
       Overview
      Scientist researching molecular recognition using experimental biophysics & computation.


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       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Coleman RG, Carchia M, Sterling T, Irwin JJ, Shoichet BK. Ligand pose and orientational sampling in molecular docking. PLoS One. 2013; 8(10):e75992.
        View in: PubMed
      2. Cameron RT, Coleman RG, Day JP, Yalla KC, Houslay MD, Adams DR, Shoichet BK, Baillie GS. Chemical informatics uncovers a new role for moexipril as a novel inhibitor of cAMP phosphodiesterase-4 (PDE4). Biochem Pharmacol. 2013 May 1; 85(9):1297-305.
        View in: PubMed
      3. Irwin JJ, Sterling T, Mysinger MM, Bolstad ES, Coleman RG. ZINC: a free tool to discover chemistry for biology. J Chem Inf Model. 2012 Jul 23; 52(7):1757-68.
        View in: PubMed
      4. Carlsson J, Coleman RG, Setola V, Irwin JJ, Fan H, Schlessinger A, Sali A, Roth BL, Shoichet BK. Ligand discovery from a dopamine D3 receptor homology model and crystal structure. Nat Chem Biol. 2011 Nov; 7(11):769-78.
        View in: PubMed
      5. Coleman RG, Sharp KA. Protein pockets: inventory, shape, and comparison. J Chem Inf Model. 2010 Apr 26; 50(4):589-603.
        View in: PubMed
      6. Coleman RG, Sharp KA. Shape and evolution of thermostable protein structure. Proteins. 2010 Feb 1; 78(2):420-33.
        View in: PubMed
      7. Coleman RG, Sharp KA. Finding and characterizing tunnels in macromolecules with application to ion channels and pores. Biophys J. 2009 Jan; 96(2):632-45.
        View in: PubMed
      8. Cheng AC, Coleman RG, Smyth KT, Cao Q, Soulard P, Caffrey DR, Salzberg AC, Huang ES. Structure-based maximal affinity model predicts small-molecule druggability. Nat Biotechnol. 2007 Jan; 25(1):71-5.
        View in: PubMed
      9. Coleman RG, Salzberg AC, Cheng AC. Structure-based identification of small molecule binding sites using a free energy model. J Chem Inf Model. 2006 Nov-Dec; 46(6):2631-7.
        View in: PubMed
      10. Zelent B, Vanderkooi JM, Coleman RG, Gryczynski I, Gryczynski Z. Protonation of excited state pyrene-1-carboxylate by phosphate and organic acids in aqueous solution studied by fluorescence spectroscopy. Biophys J. 2006 Nov 15; 91(10):3864-71.
        View in: PubMed
      11. Coleman RG, Sharp KA. Travel depth, a new shape descriptor for macromolecules: application to ligand binding. J Mol Biol. 2006 Sep 22; 362(3):441-58.
        View in: PubMed
      12. Coleman RG, Burr MA, Souvaine DL, Cheng AC. An intuitive approach to measuring protein surface curvature. Proteins. 2005 Dec 1; 61(4):1068-74.
        View in: PubMed
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