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    Swati Kaushik, PhD

    TitlePostdoctoral Scholar
    SchoolUCSF School of Pharmacy
    Address1450 3rd Street
    San Francisco CA 94158
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      Collapse Biography 
      Collapse Education and Training
      National Center For Biological SciencesPhDTata Institute of Fundamental Research2014
      University of PuneMS2008
      Collapse Awards and Honors
      DBT, India2008 - 2013Department of Biotechnology, PhD fellowship
      NCBS-TIFR2013 - 2014Bridging fellowship

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Kaushik S, Nair AG, Mutt E, Subramanian HP, Sowdhamini R. Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space. Bioinformatics. 2016 Feb 1; 32(3):338-44. PMID: 26454276.
        View in: PubMed
      2. Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N, Lingu CS, Mahita J, Malarini R, Malhotra S, Malini M, Mathew OK, Mutt E, Naika M, Nitish S, Pasha SN, Raghavender US, Rajamani A, Shilpa S, Shingate PN, Singh HR, Sukhwal A, Sunitha MS, Sumathi M, Ramaswamy S, Gowda M, Sowdhamini R. Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties. BMC Plant Biol. 2015; 15:212. PMID: 26315624; PMCID: PMC4552454.
      3. Patil P, Skariyachan S, Mutt E, Kaushik S. Computational Analysis of the Domain Architecture and Substrate-Gating Mechanism of Prolyl Oligopeptidases from Shewanella woodyi and Identification of Probable Lead Molecules. Interdiscip Sci. 2015 Aug 23. PMID: 26298583.
        View in: PubMed
      4. Kaushik S, Sowdhamini R. Distribution, classification, domain architectures and evolution of prolyl oligopeptidases in prokaryotic lineages. BMC Genomics. 2014; 15:985. PMID: 25407321; PMCID: PMC4522959.
      5. Kaushik S, Etchebest C, Sowdhamini R. Decoding the structural events in substrate-gating mechanism of eukaryotic prolyl oligopeptidase using normal mode analysis and molecular dynamics simulations. Proteins. 2014 Jul; 82(7):1428-43. PMID: 24500901.
        View in: PubMed
      6. Kaushik S, Mutt E, Chellappan A, Sankaran S, Srinivasan N, Sowdhamini R. Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage. PLoS One. 2013; 8(2):e56449. PMID: 23437136; PMCID: PMC3577913.
      7. Kaushik S, Sowdhamini R. Structural analysis of prolyl oligopeptidases using molecular docking and dynamics: insights into conformational changes and ligand binding. PLoS One. 2011; 6(11):e26251. PMID: 22132071; PMCID: PMC3223163.
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