Allen Ye, MD, PhD

Title(s)Resident, Radiology
SchoolSchool of Medicine
Address505 Parnassus Avenue
San Francisco CA 94117
Phone--
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Detection of axonal degeneration in a mouse model of Huntington's disease: comparison between diffusion tensor imaging and anomalous diffusion metrics. MAGMA. 2019 Aug; 32(4):461-471. Gatto RG, Ye AQ, Colon-Perez L, Mareci TH, Lysakowski A, Price SD, Brady ST, Karaman M, Morfini G, Magin RL. PMID: 30771034.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    2. Scattering and Diffraction of Elastodynamic Waves in a Concentric Cylindrical Phantom for MR Elastography. IEEE Trans Biomed Eng. 2016 11; 63(11):2308-2316. Schwartz BL, Yin Z, Yasar TK, Liu Y, Khan AA, Ye AQ, Royston TJ, Magin RL, Schwartz BL, Yin Z, Yasar TK, Liu Y, Khan AA, Ye AQ, Royston TJ, Magin RL. PMID: 26886963; PMCID: PMC5097039.
      View in: PubMed   Mentions: 2     Fields:    
    3. The intrinsic geometry of the human brain connectome. Brain Inform. 2015 Dec; 2(4):197-210. Ye AQ, Ajilore OA, Conte G, GadElkarim J, Thomas-Ramos G, Zhan L, Yang S, Kumar A, Magin RL, G Forbes A, Leow AD. PMID: 27747562.
      View in: PubMed   Mentions: 6  
    4. The intrinsic geometry of the human brain connectome. Brain Inform. 2015; 2:197-210. Ye AQ, Ajilore OA, Conte G, GadElkarim J, Thomas-Ramos G, Zhan L, Yang S, Kumar A, Magin RL, G Forbes A, Leow AD. PMID: 26870631.
      View in: PubMed   Mentions:
    5. Biological and MRI characterization of biomimetic ECM scaffolds for cartilage tissue regeneration. Biomaterials. 2015 Dec; 71:58-70. Ravindran S, Kotecha M, Huang CC, Ye A, Pothirajan P, Yin Z, Magin R, George A, Ravindran S, Kotecha M, Huang CC, Ye A, Pothirajan P, Yin Z, Magin R, George A. PMID: 26318817; PMCID: PMC4572912.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    6. Analysis of YFP(J16)-R6/2 reporter mice and postmortem brains reveals early pathology and increased vulnerability of callosal axons in Huntington's disease. Hum Mol Genet. 2015 Sep 15; 24(18):5285-98. Gatto RG, Chu Y, Ye AQ, Price SD, Tavassoli E, Buenaventura A, Brady ST, Magin RL, Kordower JH, Morfini GA, Gatto RG, Chu Y, Ye AQ, Price SD, Tavassoli E, Buenaventura A, Brady ST, Magin RL, Kordower JH, Morfini GA. PMID: 26123489; PMCID: PMC4550824.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    7. Measuring embeddedness: Hierarchical scale-dependent information exchange efficiency of the human brain connectome. Hum Brain Mapp. 2015 Sep; 36(9):3653-65. Ye AQ, Zhan L, Conrin S, GadElKarim J, Zhang A, Yang S, Feusner JD, Kumar A, Ajilore O, Leow A, Ye AQ, Zhan L, Conrin S, GadElKarim J, Zhang A, Yang S, Feusner JD, Kumar A, Ajilore O, Leow A. PMID: 26096223; PMCID: PMC4898972.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    8. Anisotropic fractional diffusion tensor imaging. J Vib Control. 2016 May; 22(9):2211-2221. Meerschaert MM, Magin RL, Ye AQ, Meerschaert MM, Magin RL, Ye AQ. PMID: 27499605; PMCID: PMC4973862.
      View in: PubMed   Mentions: 3  
    9. Diffusion tensor MRI phantom exhibits anomalous diffusion. Annu Int Conf IEEE Eng Med Biol Soc. 2014; 2014:746-9. Ye AQ, Hubbard Cristinacce PL, Zhou FL, Yin Z, Parker GJ, Magin RL, Ye AQ, Hubbard Cristinacce PL, Zhou FL, Yin Z, Parker GJ, Magin RL. PMID: 25570066; PMCID: PMC4605561.
      View in: PubMed   Mentions: 4  Translation:Cells
    10. In vivo assessment of oxygen consumption via Deuterium Magnetic Resonance. Adv Exp Med Biol. 2011; 701:193-9. Mateescu GD, Ye A, Flask CA, Erokwu B, Duerk JL, Mateescu GD, Ye A, Flask CA, Erokwu B, Duerk JL. PMID: 21445787.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    11. Ex vivo diffusion tensor MRI reflects microscopic structural remodeling associated with aging and disease progression in normal and cardiomyopathic Syrian hamsters. NMR Biomed. 2009 Oct; 22(8):819-25. Li W, Lu M, Banerjee S, Zhong J, Ye A, Molter J, Yu X, Li W, Lu M, Banerjee S, Zhong J, Ye A, Molter J, Yu X. PMID: 19434665; PMCID: PMC2849973.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimals
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