Amy Fan, PhD

Title(s)Postdoctoral Scholar, Pathology
SchoolSchool of Medicine
Address513 Parnassus Avenue, HSW, #518
San Francisco CA 94143
ORCID ORCID Icon0000-0003-1612-1862 Additional info
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    Collapse Biography 
    Collapse Education and Training
    MIT, Cambridge, MABS02/2015Biology
    Stanford University, Stanford, CAPhD08/2023Immunology
    Collapse Awards and Honors
    MIT2014Amgen Scholar Program
    MIT2015Gene Brown Prize for Teaching
    Stanford University2016  - 2021Stanford Graduate Fellowship
    Stanford University2017  - 2020NSF GRFP
    Stanford University2019Excellence in Advocacy
    Stanford Immunology2020Best Graduate Student Talk
    2020ASH Abstract Achievement Award
    Stanford University2021  - 2022Gerald J. Lieberman Fellowship
    Stanford University2021James W. Lyons Award
    Stanford University2021International Society of Experimental Hematology Travel Grant

    Collapse Overview 
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    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Genome engineering with Cas9 and AAV repair templates generates frequent concatemeric insertions of viral vectors. Nat Biotechnol. 2024 Apr 08. Suchy FP, Karigane D, Nakauchi Y, Higuchi M, Zhang J, Pekrun K, Hsu I, Fan AC, Nishimura T, Charlesworth CT, Bhadury J, Nishimura T, Wilkinson AC, Kay MA, Majeti R, Nakauchi H. PMID: 38589662.
      View in: PubMed   Mentions:
    2. Human ASXL1-mutant hematopoiesis is driven by a truncated protein associated with aberrant de-ubiquitination of H2AK119. Blood Cancer Discov. 2024 Feb 15. Kohnke T, Nuno KA, Alder CC, Gars EJ, Phan P, Fan AC, Majeti R. PMID: 38359087.
      View in: PubMed   Mentions:    Fields:    
    3. IDH1-Mutant Preleukemic Hematopoietic Stem Cells Can Be Eliminated by Inhibition of Oxidative Phosphorylation. Blood Cancer Discov. 2024 Jan 23; OF1-OF18. Landberg N, Köhnke T, Feng Y, Nakauchi Y, Fan AC, Linde MH, Karigane D, Lim K, Sinha R, Malcovati L, Thomas D, Majeti R. PMID: 38261864.
      View in: PubMed   Mentions: 1     Fields:    
    4. IDH1-mutant preleukemic hematopoietic stem cells can be eliminated by inhibition of oxidative phosphorylation. Blood Cancer Discov. 2023 Dec 13. Landberg N, Köhnke T, Feng Y, Nakauchi Y, Fan AC, Linde MH, Karigane D, Lim K, Sinha R, Malcovati L, Thomas D, Majeti R. PMID: 38091010; PMCID: PMC10905513.
      View in: PubMed   Mentions:    Fields:    
    5. RUNX1 loss renders hematopoietic and leukemic cells dependent on IL-3 and sensitive to JAK inhibition. J Clin Invest. 2023 10 02; 133(19). Fan AC, Nakauchi Y, Bai L, Azizi A, Nuno KA, Zhao F, Köhnke T, Karigane D, Cruz-Hernandez D, Reinisch A, Khatri P, Majeti R. PMID: 37581927; PMCID: PMC10541186.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    6. Reprogramming Cancer into Antigen-Presenting Cells as a Novel Immunotherapy. Cancer Discov. 2023 05 04; 13(5):1164-1185. Linde MH, Fan AC, Köhnke T, Trotman-Grant AC, Gurev SF, Phan P, Zhao F, Haddock NL, Nuno KA, Gars EJ, Stafford M, Marshall PL, Dove CG, Linde IL, Landberg N, Miller LP, Majzner RG, Zhang TY, Majeti R. PMID: 36856575.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    7. The Cell Type-Specific 5hmC Landscape and Dynamics of Healthy Human Hematopoiesis and TET2-Mutant Preleukemia. Blood Cancer Discov. 2022 07 06; 3(4):346-367. Nakauchi Y, Azizi A, Thomas D, Corces MR, Reinisch A, Sharma R, Cruz Hernandez D, Köhnke T, Karigane D, Fan A, Martinez-Krams D, Stafford M, Kaur S, Dutta R, Phan P, Ediriwickrema A, McCarthy E, Ning Y, Phillips T, Ellison CK, Guler GD, Bergamaschi A, Ku CJ, Levy S, Majeti R. PMID: 35532363; PMCID: PMC9338760.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    8. Black In Immuno: harnessing social media and digital platforms to connect the dots. Nat Rev Immunol. 2021 12; 21(12):756-757. Babdor J, Fan AC, Wane M, Mbiribindi B, Mobley AS, Noel JC, Kouame E. PMID: 34744170.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. Black in Immuno Week: Who We Are, What We Did, and Why It Matters. J Immunol. 2021 10 15; 207(8):1941-1947. Kouame E, Noel JC, Wane M, Babdor J, Caslin HL, Fan A, Mbiribindi B, Sattler S, Mobley AS. PMID: 34607907.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    10. NOT-Gated CD93 CAR T Cells Effectively Target AML with Minimized Endothelial Cross-Reactivity. Blood Cancer Discov. 2021 Nov; 2(6):648-665. Richards RM, Zhao F, Freitas KA, Parker KR, Xu P, Fan A, Sotillo E, Daugaard M, Oo HZ, Liu J, Hong WJ, Sorensen PH, Chang HY, Satpathy AT, Majzner RG, Majeti R, Mackall CL. PMID: 34778803; PMCID: PMC8580619.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    11. Niche-directed therapy in acute myeloid leukemia: optimization of stem cell competition for niche occupancy. Leuk Lymphoma. 2022 01; 63(1):10-18. Patel SA, Dalela D, Fan AC, Lloyd MR, Zhang TY. PMID: 34407733; PMCID: PMC9023050.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    12. Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis. Sci Rep. 2019 12 17; 9(1):19244. Betin V, Penaranda C, Bandyopadhyay N, Yang R, Abitua A, Bhattacharyya RP, Fan A, Avraham R, Livny J, Shoresh N, Hung DT. PMID: 31848386; PMCID: PMC6917760.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    13. scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing. Genome Biol. 2017 10 27; 18(1):200. Avital G, Avraham R, Fan A, Hashimshony T, Hung DT, Yanai I. PMID: 29073931; PMCID: PMC5658913.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    14. A highly multiplexed and sensitive RNA-seq protocol for simultaneous analysis of host and pathogen transcriptomes. Nat Protoc. 2016 08; 11(8):1477-91. Avraham R, Haseley N, Fan A, Bloom-Ackermann Z, Livny J, Hung DT. PMID: 27442864.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
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