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Andrew Pohorille, PhD, MS

TitleProfessor
InstitutionUniversity of California San Francisco
DepartmentPharmaceutical Chemistry
Address3333 California Street
San Francisco CA 94118
Phone650-604-5759
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    Sites and Mechanisms of Inhaled Anesthetic Actions
    NIH/NIGMS P01GM047818Aug 1, 1994 - Jul 31, 2010
    Role: Co-Investigator
    Resource for Biocomputing, Visualization, and Informatics
    NIH/NCRR P41RR001081Jun 1, 1976 - Sep 14, 2012
    Role: Co-Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Wei C, Pohorille A. Sequence-Dependent Interfacial Adsorption and Permeation of Dipeptides across Phospholipid Membranes. J Phys Chem B. 2017 Oct 26; 121(42):9859-9867. PMID: 28982244.
      View in: PubMed
    2. Pohorille A, Wilson MA, Shannon G. Flexible Proteins at the Origin of Life. Life (Basel). 2017 Jun 05; 7(2). PMID: 28587235.
      View in: PubMed
    3. Karouia F, Peyvan K, Pohorille A. Toward biotechnology in space: High-throughput instruments for in situ biological research beyond Earth. Biotechnol Adv. 2017 Nov 15; 35(7):905-932. PMID: 28433608.
      View in: PubMed
    4. Pohorille A, Wilson MA, Wei C. Validity of the Electrodiffusion Model for Calculating Conductance of Simple Ion Channels. J Phys Chem B. 2017 04 20; 121(15):3607-3619. PMID: 27936743.
      View in: PubMed
    5. Wei C, Pohorille A. M2 proton channel: toward a model of a primitive proton pump. Orig Life Evol Biosph. 2015 Jun; 45(1-2):241-8. PMID: 25777465.
      View in: PubMed
    6. A Wilson M, Wei C, Pohorille A. Towards co-evolution of membrane proteins and metabolism. Orig Life Evol Biosph. 2014 Dec; 44(4):357-61. PMID: 25614291.
      View in: PubMed
    7. Saha R, Pohorille A, Chen IA. Molecular crowding and early evolution. Orig Life Evol Biosph. 2014 Dec; 44(4):319-24. PMID: 25585804.
      View in: PubMed
    8. Wilson MA, Nguyen TH, Pohorille A. Combining molecular dynamics and an electrodiffusion model to calculate ion channel conductance. J Chem Phys. 2014 Dec 14; 141(22):22D519. PMID: 25494790.
      View in: PubMed
    9. Wei C, Pohorille A. Flip-flop of oleic acid in a phospholipid membrane: rate and mechanism. J Phys Chem B. 2014 Nov 13; 118(45):12919-26. PMID: 25319959.
      View in: PubMed
    10. Comer J, Gumbart JC, Hénin J, Lelièvre T, Pohorille A, Chipot C. The adaptive biasing force method: everything you always wanted to know but were afraid to ask. J Phys Chem B. 2015 Jan 22; 119(3):1129-51. PMID: 25247823; PMCID: PMC4306294.
    11. Wei C, Pohorille A. Activation and proton transport mechanism in influenza A M2 channel. Biophys J. 2013 Nov 05; 105(9):2036-45. PMID: 24209848; PMCID: PMC3824548.
    12. Wei C, Pohorille A. Permeation of aldopentoses and nucleosides through fatty acid and phospholipid membranes: implications to the origins of life. Astrobiology. 2013 Feb; 13(2):177-88. PMID: 23397957.
      View in: PubMed
    13. Pohorille A. Processes that drove the transition from chemistry to biology: concepts and evidence. Orig Life Evol Biosph. 2012 Oct; 42(5):429-32. PMID: 23080008.
      View in: PubMed
    14. Wilson MA, Wei C, Bjelkmar P, Wallace BA, Pohorille A. Molecular dynamics simulation of the antiamoebin ion channel: linking structure and conductance. Biophys J. 2011 May 18; 100(10):2394-402. PMID: 21575573; PMCID: PMC3093558.
    15. Wei C, Pohorille A. Permeation of nucleosides through lipid bilayers. J Phys Chem B. 2011 Apr 07; 115(13):3681-8. PMID: 21405137.
      View in: PubMed
    16. Pohorille A, Jarzynski C, Chipot C. Good practices in free-energy calculations. J Phys Chem B. 2010 Aug 19; 114(32):10235-53. PMID: 20701361.
      View in: PubMed
    17. Wei C, Pohorille A. Permeation of membranes by ribose and its diastereomers. J Am Chem Soc. 2009 Jul 29; 131(29):10237-45. PMID: 19621967.
      View in: PubMed
    18. Pohorille A, Deamer D. Self-assembly and function of primitive cell membranes. Res Microbiol. 2009 Sep; 160(7):449-56. PMID: 19580865.
      View in: PubMed
    19. Des Marais DJ, Nuth JA, Allamandola LJ, Boss AP, Farmer JD, Hoehler TM, Jakosky BM, Meadows VS, Pohorille A, Runnegar B, Spormann AM. The NASA Astrobiology Roadmap. Astrobiology. 2008 Aug; 8(4):715-30. PMID: 18793098.
      View in: PubMed
    20. Darve E, Rodríguez-Gómez D, Pohorille A. Adaptive biasing force method for scalar and vector free energy calculations. J Chem Phys. 2008 Apr 14; 128(14):144120. PMID: 18412436.
      View in: PubMed
    21. Langley P, Shiran O, Shrager J, Todorovski L, Pohorille A. Constructing explanatory process models from biological data and knowledge. Artif Intell Med. 2006 Jul; 37(3):191-201. PMID: 16781850.
      View in: PubMed
    22. Hénin J, Pohorille A, Chipot C. Insights into the recognition and association of transmembrane alpha-helices. The free energy of alpha-helix dimerization in glycophorin A. J Am Chem Soc. 2005 Jun 15; 127(23):8478-84. PMID: 15941282.
      View in: PubMed
    23. Pohorille A, Schweighofer K, Wilson MA. The origin and early evolution of membrane channels. Astrobiology. 2005 Feb; 5(1):1-17. PMID: 15711166.
      View in: PubMed
    24. Rodriguez-Gomez D, Darve E, Pohorille A. Assessing the efficiency of free energy calculation methods. J Chem Phys. 2004 Feb 22; 120(8):3563-78. PMID: 15268518.
      View in: PubMed
    25. Pohorille A, Wilson MA, Chipot C. Membrane peptides and their role in protobiological evolution. Orig Life Evol Biosph. 2003 Apr; 33(2):173-97. PMID: 12967266.
      View in: PubMed
    26. Chrisman L, Langley P, Bay S, Pohorille A. Incorporating biological knowledge into evaluation of causal regulatory hypotheses. Pac Symp Biocomput. 2003; 128-39. PMID: 12603023.
      View in: PubMed
    27. Pratt LR, Pohorille A. Hydrophobic effects and modeling of biophysical aqueous solution interfaces. Chem Rev. 2002 Aug; 102(8):2671-92. PMID: 12175264.
      View in: PubMed
    28. Pohorille A, Deamer D. Artificial cells: prospects for biotechnology. Trends Biotechnol. 2002 Mar; 20(3):123-8. PMID: 11841864.
      View in: PubMed
    29. Shrager J, Langley P, Pohorille A. Guiding revision of regulatory models with expression data. Pac Symp Biocomput. 2002; 486-97. PMID: 11928501.
      View in: PubMed
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