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Aparna Bhaduri, PhD

Title(s)Postdoctoral Scholar, Regeneration Medicine
SchoolSchool of Medicine
Address35 Medical Center Way
San Francisco CA 94143
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    Collapse Biography 
    Collapse Education and Training
    Rice University, Houston, TXB.S./B.A.05/2010Biochemistry and Cell Biology; Political Science
    Stanford University, Stanford, CAPh.D.06/2016Cancer Biology

    Collapse Research 
    Collapse Research Activities and Funding
    Understanding Brain Development Through the Lens of Metabolism
    NIH/NINDS K99NS111731Jun 1, 2019 - May 31, 2021
    Role: Principal Investigator
    Using Single-Cell RNA Sequencing to Characterize Regional Differences in Cortical Development
    NIH/NINDS F32NS103266Aug 1, 2017 - Jul 31, 2019
    Role: Principal Investigator
    SMRT-2 in Epidermal Neoplasia
    NIH/NCI F31CA180408Jul 1, 2013 - Jun 30, 2015
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Origins and Proliferative States of Human Oligodendrocyte Precursor Cells. Cell. 2020 Jul 09. Huang W, Bhaduri A, Velmeshev D, Wang S, Wang L, Rottkamp CA, Alvarez-Buylla A, Rowitch DH, Kriegstein AR. PMID: 32679030.
      View in: PubMed   Mentions:    Fields:    
    2. Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma. Cell. 2020 Jun 19. Ji AL, Rubin AJ, Thrane K, Jiang S, Reynolds DL, Meyers RM, Guo MG, George BM, Mollbrink A, Bergenstråhle J, Larsson L, Bai Y, Zhu B, Bhaduri A, Meyers JM, Rovira-Clavé X, Hollmig ST, Aasi SZ, Nolan GP, Lundeberg J, Khavari PA. PMID: 32579974.
      View in: PubMed   Mentions:    Fields:    
    3. Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog. Cell Rep. 2020 Mar 31; 30(13):4490-4504.e4. Zhang Y, Liu G, Guo T, Liang XG, Du H, Yang L, Bhaduri A, Li X, Xu Z, Zhang Z, Li Z, He M, Tsyporin J, Kriegstein AR, Rubenstein JL, Yang Z, Chen B. PMID: 32234482.
      View in: PubMed   Mentions:    Fields:    
    4. Cell stress in cortical organoids impairs molecular subtype specification. Nature. 2020 02; 578(7793):142-148. Bhaduri A, Andrews MG, Mancia Leon W, Jung D, Shin D, Allen D, Jung D, Schmunk G, Haeussler M, Salma J, Pollen AA, Nowakowski TJ, Kriegstein AR. PMID: 31996853.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    5. Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism. Cell. 2020 Feb 06; 180(3):568-584.e23. Satterstrom FK, Kosmicki JA, Wang J, Breen MS, De Rubeis S, An JY, Peng M, Collins R, Grove J, Klei L, Stevens C, Reichert J, Mulhern MS, Artomov M, Gerges S, Sheppard B, Xu X, Bhaduri A, Norman U, Brand H, Schwartz G, Nguyen R, Guerrero EE, Dias C, Betancur C, Cook EH, Gallagher L, Gill M, Sutcliffe JS, Thurm A, Zwick ME, Børglum AD, State MW, Cicek AE, Talkowski ME, Cutler DJ, Devlin B, Sanders SJ, Roeder K, Daly MJ, Buxbaum JD. PMID: 31981491.
      View in: PubMed   Mentions: 25     Fields:    
    6. Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma. Cell Stem Cell. 2020 01 02; 26(1):48-63.e6. Bhaduri A, Di Lullo E, Jung D, Müller S, Crouch EE, Espinosa CS, Ozawa T, Alvarado B, Spatazza J, Cadwell CR, Wilkins G, Velmeshev D, Liu SJ, Malatesta M, Andrews MG, Mostajo-Radji MA, Huang EJ, Nowakowski TJ, Lim DA, Diaz A, Raleigh DR, Kriegstein AR. PMID: 31901251.
      View in: PubMed   Mentions: 3     Fields:    
    7. Development and Arealization of the Cerebral Cortex. Neuron. 2019 09 25; 103(6):980-1004. Cadwell CR, Bhaduri A, Mostajo-Radji MA, Keefe MG, Nowakowski TJ. PMID: 31557462.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    8. Neuronal vulnerability and multilineage diversity in multiple sclerosis. Nature. 2019 09; 573(7772):75-82. Schirmer L, Velmeshev D, Holmqvist S, Kaufmann M, Werneburg S, Jung D, Vistnes S, Stockley JH, Young A, Steindel M, Tung B, Goyal N, Bhaduri A, Mayer S, Engler JB, Bayraktar OA, Franklin RJM, Haeussler M, Reynolds R, Schafer DP, Friese MA, Shiow LR, Kriegstein AR, Rowitch DH. PMID: 31316211.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    9. Single-cell genomics identifies cell type-specific molecular changes in autism. Science. 2019 05 17; 364(6441):685-689. Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH, Kriegstein AR. PMID: 31097668.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    10. 136 Dissecting intratumoral heterogeneity and microenvironment interactions in SCC through single-cell RNA-sequencing. Journal of Investigative Dermatology. 2019 May 1; 139(5):s24. A. Ji, A. Rubin, D. Reynolds, M. Guo, A. Bhaduri, B. George, S. Hollmig, S. Aasi, P. Khavari. .
      View in: Publisher Site   Mentions:
    11. Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. Neuron. 2019 04 03; 102(1):143-158.e7. Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, Leyrat A, West JAA, Panagiotakos G, Alvarez-Buylla A, Paredes MF, Nowakowski TJ, Pollen AA, Kriegstein AR. PMID: 30770253.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    12. Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution. Cell. 2019 02 07; 176(4):743-756.e17. Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, Bershteyn M, Lowe CB, Pavlovic BJ, Salama SR, Haussler D, Eichler EE, Kriegstein AR. PMID: 30735633.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    13. Shared and derived features of cellular diversity in the human cerebral cortex. Curr Opin Neurobiol. 2019 06; 56:117-124. Miller DJ, Bhaduri A, Sestan N, Kriegstein A. PMID: 30677551.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    14. Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing. J Anat. 2019 09; 235(3):543-554. Adorjan I, Tyler T, Bhaduri A, Demharter S, Finszter CK, Bako M, Sebok OM, Nowakowski TJ, Khodosevich K, Møllgård K, Kriegstein AR, Shi L, Hoerder-Suabedissen A, Ansorge O, Molnár Z. PMID: 30644551.
      View in: PubMed   Mentions: 2     Fields:    
    15. The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2. Mol Cell. 2019 02 21; 73(4):830-844.e12. Kovalski JR, Bhaduri A, Zehnder AM, Neela PH, Che Y, Wozniak GG, Khavari PA. PMID: 30639242.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    16. STEM-06. A DRAFT SINGLE-CELL ATLAS OF HUMAN GLIOBLASTOMA REVEALS SPATIAL AND DIFFERENTIATION GRADIENTS OF STEM-LIKE CELLS. Neuro-Oncology. 2018 Nov 5; 20(suppl_6):vi244-vi245. Soeren Mueller, Aparna Bhaduri, Elizabeth DiLullo, Garima Yagnik, Daniel Lim, Manish Aghi, Arnold Kriegstein, Aaron Diaz. .
      View in: Publisher Site   Mentions:
    17. Single-cell sequencing paints diverse pictures of the brain. Nature. 2018 11; 563(7729):38-39. Bhaduri A, Nowakowski TJ. PMID: 30382219.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    18. Identification of cell types in a mouse brain single-cell atlas using low sampling coverage. BMC Biol. 2018 10 11; 16(1):113. Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR. PMID: 30309354.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    19. Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis. Cell. 2018 05 31; 173(6):1356-1369.e22. Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, Nowakowski TJ, Pollen AA, Dougherty ML, Nuttle X, Addor MC, Zwolinski S, Katzman S, Kriegstein A, Eichler EE, Salama SR, Jacobs FMJ, Haussler D. PMID: 29856954.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    20. 727 Metabolomic analysis reveals an essential role for glucose in epidermal differentiation. Journal of Investigative Dermatology. 2018 May 1; 138(5):s123. V. Lopez-Pajares, A. Bhaduri, O. Garcia, A. Guerrero, G. Gowrishankar, Y. Che, A. Sanchez, L. Boxer, S. Gambhir, P. Khavari. .
      View in: Publisher Site   Mentions:
    21. Next-generation sequencing of idiopathic multicentric and unicentric Castleman disease and follicular dendritic cell sarcomas. Blood Adv. 2018 03 13; 2(5):481-491. Nagy A, Bhaduri A, Shahmarvand N, Shahryari J, Zehnder JL, Warnke RA, Mughal T, Ali S, Ohgami RS. PMID: 29496669.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    22. Cancer-Associated Long Noncoding RNA SMRT-2 Controls Epidermal Differentiation. J Invest Dermatol. 2018 06; 138(6):1445-1449. Lee CS, Mah A, Aros CJ, Lopez-Pajares V, Bhaduri A, Webster DE, Kretz M, Khavari PA. PMID: 29360484.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    23. Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment. Genome Biol. 2017 Dec 20; 18(1):234. Müller S, Kohanbash G, Liu SJ, Alvarado B, Carrera D, Bhaduri A, Watchmaker PB, Yagnik G, Di Lullo E, Malatesta M, Amankulor NM, Kriegstein AR, Lim DA, Aghi M, Okada H, Diaz A. PMID: 29262845.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    24. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science. 2017 12 08; 358(6368):1318-1323. Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR. PMID: 29217575.
      View in: PubMed   Mentions: 59     Fields:    Translation:HumansCells
    25. 121 The SNORD86 small non-coding RNA binds and regulates Rac1. Journal of Investigative Dermatology. 2017 May 1; 137(5):s21. E. Rios, A. Bhaduri, Z. Siprashvili, B. Zarnegar, P.A. Khavari. .
      View in: Publisher Site   Mentions:
    26. A study of the mutational landscape of pediatric-type follicular lymphoma and pediatric nodal marginal zone lymphoma. Mod Pathol. 2016 10; 29(10):1212-20. Ozawa MG, Bhaduri A, Chisholm KM, Baker SA, Ma L, Zehnder JL, Luna-Fineman S, Link MP, Merker JD, Arber DA, Ohgami RS. PMID: 27338637.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    27. Network Analysis Identifies Mitochondrial Regulation of Epidermal Differentiation by MPZL3 and FDXR. Dev Cell. 2015 Nov 23; 35(4):444-57. Bhaduri A, Ungewickell A, Boxer LD, Lopez-Pajares V, Zarnegar BJ, Khavari PA. PMID: 26609959.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    28. The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer. Nat Genet. 2016 Jan; 48(1):53-8. Siprashvili Z, Webster DE, Johnston D, Shenoy RM, Ungewickell AJ, Bhaduri A, Flockhart R, Zarnegar BJ, Che Y, Meschi F, Puglisi JD, Khavari PA. PMID: 26595770.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    29. Genomic analysis of mycosis fungoides and Sézary syndrome identifies recurrent alterations in TNFR2. Nat Genet. 2015 Sep; 47(9):1056-60. Ungewickell A, Bhaduri A, Rios E, Reuter J, Lee CS, Mah A, Zehnder A, Ohgami R, Kulkarni S, Armstrong R, Weng WK, Gratzinger D, Tavallaee M, Rook A, Snyder M, Kim Y, Khavari PA. PMID: 26258847.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansCells
    30. Recurrent point mutations in the kinetochore gene KNSTRN in cutaneous squamous cell carcinoma. Nat Genet. 2014 Oct; 46(10):1060-2. Lee CS, Bhaduri A, Mah A, Johnson WL, Ungewickell A, Aros CJ, Nguyen CB, Rios EJ, Siprashvili Z, Straight A, Kim J, Aasi SZ, Khavari PA. PMID: 25194279.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    31. Quantitative analysis of mammalian translation initiation sites by FACS-seq. Mol Syst Biol. 2014 Aug 28; 10:748. Noderer WL, Flockhart RJ, Bhaduri A, Diaz de Arce AJ, Zhang J, Khavari PA, Wang CL. PMID: 25170020.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCells
    32. Transcriptome sequencing in Sezary syndrome identifies Sezary cell and mycosis fungoides-associated lncRNAs and novel transcripts. Blood. 2012 Oct 18; 120(16):3288-97. Lee CS, Ungewickell A, Bhaduri A, Qu K, Webster DE, Armstrong R, Weng WK, Aros CJ, Mah A, Chen RO, Lin M, Sundram U, Chang HY, Kretz M, Kim YH, Khavari PA. PMID: 22936659.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    33. Rapid identification of non-human sequences in high-throughput sequencing datasets. Bioinformatics. 2012 Apr 15; 28(8):1174-5. Bhaduri A, Qu K, Lee CS, Ungewickell A, Khavari PA. PMID: 22377895.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    34. Product profile of PEN3: the last unexamined oxidosqualene cyclase in Arabidopsis thaliana. Org Lett. 2009 Jun 18; 11(12):2627-30. Morlacchi P, Wilson WK, Xiong Q, Bhaduri A, Sttivend D, Kolesnikova MD, Matsuda SP. PMID: 19445469.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
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