]]>
function checkData() {
// see if we already have this person/app combination internally in the system
osapi.orng.getAppInstance().execute(function(result) {
// if we do NOT have this in the system, then automatically add this to the persons if they have data from the service
if (typeof result !== 'string') {
readData(registerApp);
}
});
}
function registerApp(collaboratorsStr) {
//var collaborators = gadgets.json.parse(collaboratorsStr.data);
// if links data exists
var peopleFrame = gadgets.json.parse('[{"http://ucsf.edu/ontology/r2r#contributedTo": {}}]');
//var peopleFrame = gadgets.json.parse('[{"@type": "http://xmlns.com/foaf/0.1/Person"}]');
jsonld.frame(gadgets.json.parse(collaboratorsStr.data), peopleFrame, function(err, collaborators) {
if (collaborators && collaborators['@graph'] && collaborators['@graph'].length) {
// need to tell container that it is OK to show us
osapi.orng.addAppToOwner().execute(function(result) {
});
}
else {
// this does a "hard delete" and removes the app instance
osapi.orng.removeAppFromOwner().execute(function(result) {
});
}
});
}
gadgets.util.registerOnLoadHandler(checkData);
]]>
var map;
function loadScript() {
var script = document.createElement('script');
script.type = 'text/javascript';
script.src = 'https://maps.googleapis.com/maps/api/js?v=3.exp&' +'callback=initialize';
document.body.appendChild(script);
}
function initialize() {
var mapOptions = {
center: new google.maps.LatLng(39.622, -98.571),
zoom: 3
};
map = new google.maps.Map(document.getElementById("map-canvas"), mapOptions);
}
function readData2(ownerUri, callback) {
var params = {};
params[gadgets.io.RequestParameters.METHOD] = gadgets.io.MethodType.GET;
var url = 'http://stage-r2r.ucsf.edu/crosslinks/coauthors?researcherURI=' + getProductionURI(ownerUri) + '&format=JSON-LD';
gadgets.io.makeRequest(url, callback, params);
}
var publications = {};
function loadPubs(callback) {
var options = {};
options.output = "full";
osapi.jsonld.getOwner(options).execute(function(data) {
// in this case the owner will be the first and only item returned
var ownerUri = data.uris[0];
framePerson(data, function(owner) {
var publications = owner[VIVO('authorInAuthorship')];
if (publications instanceof Array) {
for (var i in publications) {
var pub = publications[i][VIVO('linkedInformationResource')];
if(pub) {
loadPub(pub);
}
}
}
else if (publications) {
var pub = publications[VIVO('linkedInformationResource')];
loadPub(pub);
}
if(callback) {
//var ownerUri = getProductionURI(owner['@id']);
readData2(ownerUri, callback);
}
});
});
};
function loadPub(pub) {
// check if this is an object first!
if (pub == null || typeof pub != 'object') {
return;
}
var publication = {};
publication.id = pub['@id'].substring(pub['@id'].lastIndexOf('/') +1);
publication.authorList = pub[PRNS('hasAuthorList')];
publication.publicationVenue = pub[PRNS('hasPublicationVenue')];
publication.pd = pub[PRNS('publicationDate')];
publication.year = pub[PRNS('year')];
publication.label = pub[RDFS('label')];
publication.pmid = pub[BIBO('pmid')];
publication.title = publication.authorList + '; ' + publication.label + '; ' + publication.publicationVenue + '; ' +
publication.year;
publications[publication.pmid] = publication;
}
function findPublication(pmUrl) {
var id = getPubId(pmUrl);
return publications[id];
}
function getPubId(pmUrl) {
var parts = pmUrl.split("/");
return parts[parts.length-1];
}
var CONTRIBUTED_TO = R2R('contributedTo');
function getPubCount(person) {
var pubs = person[CONTRIBUTED_TO];
if(pubs instanceof Array) {
return pubs.length;
}
return 1;
}
// for demo
function getURIFromID(base, id) {
return id.indexOf("://") == -1 ? base + id : id;
}
function getWebfinger(item, uri, viewerWebfinger) {
osapi.jsonld.getRDF(uri).execute(function(result) {
if (!result.error) {
var base = result.base;
framePerson(result, function(result) {
if (result && result[ORNG('hasActivityStreamsDemo')]) {
osapi.jsonld.getRDF(getURIFromID(base, result[ORNG('hasActivityStreamsDemo')]['@id'])).execute(function(result) {
if (result.jsonld['orng:hasApplicationInstanceData'] instanceof Array) {
for (var i = 0; i < result.jsonld['orng:hasApplicationInstanceData'].length; i++) {
var id = result.jsonld['orng:hasApplicationInstanceData'][i]['@id'];
osapi.jsonld.getRDF(getURIFromID(base, id)).execute(function(result) {
if (result.jsonld['rdfs:label'] == 'webfinger') {
var webfinger = result.jsonld['orng:applicationInstanceDataValue'];
$(item).click(function() {
follow(viewerWebfinger, webfinger);
});
$(item).show();
}
});
}
}
else if (result.jsonld['orng:hasApplicationInstanceData']) {
var id = result.jsonld['orng:hasApplicationInstanceData']['@id'];
osapi.jsonld.getRDF(getURIFromID(base, id)).execute(function(result) {
if (result.jsonld['rdfs:label'] == 'webfinger') {
var webfinger = result.jsonld['orng:applicationInstanceDataValue'];
$(item).click(function() {
follow(viewerWebfinger, webfinger);
});
$(item).show();
}
});
}
});
}
});
}
}); /* end osapi.appdata.get */
}
function getViewerWebfinger() {
// osapi.jsonld.getViewerProperties([ORNG('hasActivityStreamsDemo')]).execute(function(result) {
var options = {};
options.output = "full";
osapi.jsonld.getViewer(options).execute(function(result) {
if (!result.error) {
var base = result.base;
framePerson(result, function(viewer) {
if (viewer[ORNG('hasActivityStreamsDemo')]) {
osapi.jsonld.getRDF(base + viewer[ORNG('hasActivityStreamsDemo')]['@id']).execute(function(result) {
if (result.jsonld['orng:hasApplicationInstanceData'] instanceof Array) {
for (var i = 0; i < result.jsonld['orng:hasApplicationInstanceData'].length; i++) {
id = result.jsonld['orng:hasApplicationInstanceData'][i]['@id'];
osapi.jsonld.getRDF(getURIFromID(base, id)).execute(function(result) {
if (result.jsonld['rdfs:label'] == 'webfinger') {
var viewerWebfinger = result.jsonld['orng:applicationInstanceDataValue'];
init(viewerWebfinger);
}
});
}
}
else if (result.jsonld['orng:hasApplicationInstanceData']) {
var id = result.jsonld['orng:hasApplicationInstanceData']['@id'];
osapi.jsonld.getRDF(getURIFromID(base, id)).execute(function(result) {
if (result.jsonld['rdfs:label'] == 'webfinger') {
var viewerWebfinger = result.jsonld['orng:applicationInstanceDataValue'];
init(viewerWebfinger);
}
});
}
});
} else {init('erictest@pumpit.info');}
});
}
else {
init('erictest@pumpit.info');
}
}); /* end osapi.appdata.get */
}
gadgets.util.registerOnLoadHandler(
getViewerWebfinger
);
function init(viewerWebfinger) {
gadgets.window.adjustHeight(900);
gadgets.orng.showGadget();
loadScript();
loadPubs(function(collaboratorsStr) {
var peopleFrame = gadgets.json.parse('[{"http://ucsf.edu/ontology/r2r#contributedTo": {}}]');
jsonld.frame(gadgets.json.parse(collaboratorsStr.data), peopleFrame, function(err, collaborators) {
if (collaborators && collaborators['@graph'] && collaborators['@graph'].length) {
collaborators = collaborators['@graph'];
// need to tell container that it is OK to show us
gadgets.orng.showGadget();
// put ones with the most publications at the top, since these are all shared publications
collaborators.sort(function(a, b) {
return getPubCount(b) - getPubCount(a);
});
$(".total-count").text(collaborators.length);
for (var i = 0; i< collaborators.length;i++) {
var person = collaborators[i];
var imageURL = person[R2R('thumbnail')] || person[PRNS('mainImage')] || ENV_PROFILES_URL +
"/Profile/Images/default_img.png";
var name = person[RDFS('label')];
var webSite = person[R2R('fromRNWebSite')];
var lat = webSite[PRNS('latitude')];
var long = webSite[PRNS('longitude')];
var university = webSite[RDFS('label')];
var myLatlng = new google.maps.LatLng(lat, long);
var marker = new google.maps.Marker({
position: myLatlng,
map: map,
title: university
});
var profileUrl=person['@id'];
var pmUrl = "pubId";
var pubs = person[R2R('contributedTo')];
var pubs_count = 1;
if(pubs instanceof Array) {
pubs_count = pubs.length;
pmUrl = "http://www.ncbi.nlm.nih.gov/pubmed/?term="
for(var p=0;p
';
$("#coll-list").append(html);
}
function showOneSection(toshow) {
var sections = [ 'main', 'approval', 'waiting' ];
for (var i=0; i < sections.length; ++i) {
var s = sections[i];
var el = document.getElementById(s);
if (s === toshow) {
el.style.display = "block";
} else {
el.style.display = "none";
}
}
}
function showResults(result) {
var content = result.actor.displayName + ' is now following ' + result.object.displayName;
$('#main').html(content);
}
function follow(viewerWebfinger, tofollow) {
var username = viewerWebfinger.split('@')[0];
var params = {};
url = "https://pumpit.info/api/user/" + username + "/feed";
params[gadgets.io.RequestParameters.CONTENT_TYPE] = gadgets.io.ContentType.JSON;
params[gadgets.io.RequestParameters.AUTHORIZATION] = gadgets.io.AuthorizationType.OAUTH;
params[gadgets.io.RequestParameters.OAUTH_SERVICE_NAME] = "pumpit.info";
params[gadgets.io.RequestParameters.OAUTH_USE_TOKEN] = "always";
params[gadgets.io.RequestParameters.METHOD] = gadgets.io.MethodType.POST;
var postdata = {
verb: "follow",
object : {
"id": "acct:" + tofollow,
"objectType": "person"
}
};
params['HEADERS'] = {};
params['HEADERS']['Content-Type'] = 'application/json';
params[gadgets.io.RequestParameters.POST_DATA] = gadgets.json.stringify(postdata);//gadgets.io.encodeValues(postdata);
gadgets.io.makeRequest(url, function (response) {
if (response.oauthApprovalUrl) {
// Create the popup handler. The onOpen function is called when the user
// opens the popup window. The onClose function is called when the popup
// window is closed.
var onOpen = function() {
showOneSection('waiting');
};
var onClose = function() {
fetchData();
};
var popup = new gadgets.oauth.Popup(response.oauthApprovalUrl,
null, onOpen, onClose);
$('personalize').onclick = popup.createOpenerOnClick();
$('#personalize').attr('href', response.oauthApprovalUrl);
$('approvaldone').onclick = popup.createApprovedOnClick();
showOneSection('approval');
} else if (response.data) {
showOneSection('main');
showResults(response.data);
} else {
// The response.oauthError and response.oauthErrorText values may help debug
// problems with your gadget.
var main = document.getElementById('main');
var err = document.createTextNode('OAuth error: ' +
response.oauthError + ': ' + response.oauthErrorText);
main.appendChild(err);
showOneSection('main');
}
}, params);
}
External Collaborators are people at other institutions who have published with this person. They are sorted by most total
publications to least. Click on a name to see their profile page in a new window.
See all () people
