Ben Glicksberg, PhD

TitlePostdoctoral Scholar
SchoolUCSF School of Medicine
DepartmentComputational Health Scienc
Address550 16th. Street
San Francisco CA 94158
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    Icahn School of Medicine at Mount Sinai, New York, NYPhD09/2017Neuroscience

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Shameer K, Johnson KW, Glicksberg B, Dudley JT, Sengupta PP. Machine learning in cardiovascular medicine: are we there yet? Heart. 2018 Jan 19. PMID: 29352006.
      View in: PubMed
    2. Johnson KW, Glicksberg B, Hodos RA, Shameer K, Dudley JT. Causal inference on electronic health records to assess blood pressure treatment targets: an application of the parametric g formula. Pac Symp Biocomput. 2018; 23:180-191. PMID: 29218880.
      View in: PubMed
    3. Glicksberg B, Miotto R, Johnson KW, Shameer K, Li L, Chen R, Dudley JT. Automated disease cohort selection using word embeddings from Electronic Health Records. Pac Symp Biocomput. 2018; 23:145-156. PMID: 29218877.
      View in: PubMed
    4. Smith MR, Glicksberg B, Li L, Chen R, Morishita H, Dudley JT. Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders. Pac Symp Biocomput. 2018; 23:68-79. PMID: 29218870.
      View in: PubMed
    5. Wang Z, Li L, Glicksberg B, Israel A, Dudley JT, Ma'ayan A. Predicting age by mining electronic medical records with deep learning characterizes differences between chronological and physiological age. J Biomed Inform. 2017 Dec; 76:59-68. PMID: 29113935.
      View in: PubMed
    6. Belbin GM, Odgis J, Sorokin EP, Yee MC, Kohli S, Glicksberg B, Gignoux CR, Wojcik GL, Van Vleck T, Jeff JM, Linderman M, Schurmann C, Ruderfer D, Cai X, Merkelson A, Justice AE, Young KL, Graff M, North KE, Peters U, James R, Hindorff L, Kornreich R, Edelmann L, Gottesman O, Stahl EE, Cho JH, Loos RJ, Bottinger EP, Nadkarni GN, Abul-Husn NS, Kenny EE. Genetic identification of a common collagen disease in puerto ricans via identity-by-descent mapping in a health system. Elife. 2017 Sep 12; 6. PMID: 28895531.
      View in: PubMed
    7. Chamaria S, Johnson KW, Vengrenyuk Y, Baber U, Shameer K, Divaraniya AA, Glicksberg B, Li L, Bhatheja S, Moreno P, Maehara A, Mehran R, Dudley JT, Narula J, Sharma SK, Kini AS. Intracoronary Imaging, Cholesterol Efflux, and Transcriptomics after Intensive Statin Treatment in Diabetes. Sci Rep. 2017 Aug 01; 7(1):7001. PMID: 28765529.
      View in: PubMed
    8. Shameer K, Glicksberg B, Hodos R, Johnson KW, Badgeley MA, Readhead B, Tomlinson MS, O'Connor T, Miotto R, Kidd BA, Chen R, Ma'ayan A, Dudley JT. Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning. Brief Bioinform. 2017 Feb 15. PMID: 28200013.
      View in: PubMed
      View in: PubMed
    10. Ayers KL, Mirshahi UL, Wardeh AH, Murray MF, Hao K, Glicksberg B, Li S, Carey DJ, Chen R. A loss of function variant in CASP7 protects against Alzheimer's disease in homozygous APOE e4 allele carriers. BMC Genomics. 2016 06 23; 17 Suppl 2:445. PMID: 27358062; PMCID: PMC4928152.
    11. Glicksberg B, Li L, Badgeley MA, Shameer K, Kosoy R, Beckmann ND, Pho N, Hakenberg J, Ma M, Ayers KL, Hoffman GE, Dan Li S, Schadt EE, Patel CJ, Chen R, Dudley JT. Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. Bioinformatics. 2016 06 15; 32(12):i101-i110. PMID: 27307606; PMCID: PMC4908366.
    12. Uzilov AV, Ding W, Fink MY, Antipin Y, Brohl AS, Davis C, Lau CY, Pandya C, Shah H, Kasai Y, Powell J, Micchelli M, Castellanos R, Zhang Z, Linderman M, Kinoshita Y, Zweig M, Raustad K, Cheung K, Castillo D, Wooten M, Bourzgui I, Newman LC, Deikus G, Mathew B, Zhu J, Glicksberg B, Moe AS, Liao J, Edelmann L, Dudley JT, Maki RG, Kasarskis A, Holcombe RF, Mahajan M, Hao K, Reva B, Longtine J, Starcevic D, Sebra R, Donovan MJ, Li S, Schadt EE, Chen R. Development and clinical application of an integrative genomic approach to personalized cancer therapy. Genome Med. 2016 06 01; 8(1):62. PMID: 27245685; PMCID: PMC4888213.
    13. Li L, Lee NJ, Glicksberg B, Radbill BD, Dudley JT. Data-Driven Identification of Risk Factors of Patient Satisfaction at a Large Urban Academic Medical Center. PLoS One. 2016; 11(5):e0156076. PMID: 27228056; PMCID: PMC4881910.
    14. Badgeley MA, Shameer K, Glicksberg B, Tomlinson MS, Levin MA, McCormick PJ, Kasarskis A, Reich DL, Dudley JT. EHDViz: clinical dashboard development using open-source technologies. BMJ Open. 2016 Mar 24; 6(3):e010579. PMID: 27013597; PMCID: PMC4809078.
    15. Shameer K, Badgeley MA, Miotto R, Glicksberg B, Morgan JW, Dudley JT. Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams. Brief Bioinform. 2017 01; 18(1):105-124. PMID: 26876889.
      View in: PubMed
    16. Li L, Cheng WY, Glicksberg B, Gottesman O, Tamler R, Chen R, Bottinger EP, Dudley JT. Identification of type 2 diabetes subgroups through topological analysis of patient similarity. Sci Transl Med. 2015 Oct 28; 7(311):311ra174. PMID: 26511511; PMCID: PMC4780757.
    17. Ma M, Ru Y, Chuang LS, Hsu NY, Shi LS, Hakenberg J, Cheng WY, Uzilov A, Ding W, Glicksberg B, Chen R. Disease-associated variants in different categories of disease located in distinct regulatory elements. BMC Genomics. 2015; 16 Suppl 8:S3. PMID: 26110593; PMCID: PMC4480828.
    18. Glicksberg B, Li L, Cheng WY, Shameer K, Hakenberg J, Castellanos R, Ma M, Shi L, Shah H, Dudley JT, Chen R. An integrative pipeline for multi-modal discovery of disease relationships. Pac Symp Biocomput. 2015; 407-18. PMID: 25592600; PMCID: PMC4345399.
    19. Murrough JW, Wan LB, Iacoviello B, Collins KA, Solon C, Glicksberg B, Perez AM, Mathew SJ, Charney DS, Iosifescu DV, Burdick KE. Neurocognitive effects of ketamine in treatment-resistant major depression: association with antidepressant response. Psychopharmacology (Berl). 2013 Sep 11. PMID: 24022236.
      View in: PubMed
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