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Casey Gifford, PhD

TitlePostdoctoral Scholar
SchoolUCSF School of Medicine
DepartmentGladstone Institutes
Address
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Donaghey J, Thakurela S, Charlton J, Chen JS, Smith ZD, Gu H, Pop R, Clement K, Stamenova EK, Karnik R, Kelley DR, Gifford C, Cacchiarelli D, Rinn JL, Gnirke A, Ziller MJ, Meissner A. Genetic determinants and epigenetic effects of pioneer-factor occupancy. Nat Genet. 2018 Feb; 50(2):250-258. PMID: 29358654.
      View in: PubMed
    2. Butts JC, McCreedy DA, Martinez-Vargas JA, Mendoza-Camacho FN, Hookway TA, Gifford C, Taneja P, Noble-Haeusslein L, McDevitt TC. Differentiation of V2a interneurons from human pluripotent stem cells. Proc Natl Acad Sci U S A. 2017 May 09; 114(19):4969-4974. PMID: 28438991.
      View in: PubMed
    3. Aguilar CA, Pop R, Shcherbina A, Watts A, Matheny RW, Cacchiarelli D, Han WM, Shin E, Nakhai SA, Jang YC, Carrigan CT, Gifford C, Kottke MA, Cesana M, Lee J, Urso ML, Meissner A. Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma. Stem Cell Reports. 2016 11 08; 7(5):983-997. PMID: 27773702.
      View in: PubMed
    4. Gifford C, Srivastava D. Heart disease modelling adds a Notch to its belt. Nat Cell Biol. 2016 Jan; 18(1):3-5. PMID: 26693916.
      View in: PubMed
    5. Tsankov AM, Akopian V, Pop R, Chetty S, Gifford C, Daheron L, Tsankova NM, Meissner A. A qPCR ScoreCard quantifies the differentiation potential of human pluripotent stem cells. Nat Biotechnol. 2015 Nov; 33(11):1182-92. PMID: 26501952; PMCID: PMC4636964.
      View in: PubMed, PubMed Central
    6. Aguilar CA, Shcherbina A, Ricke DO, Pop R, Carrigan CT, Gifford C, Urso ML, Kottke MA, Meissner A. In vivo Monitoring of Transcriptional Dynamics After Lower-Limb Muscle Injury Enables Quantitative Classification of Healing. Sci Rep. 2015 Sep 18; 5:13885. PMID: 26381351; PMCID: PMC4585378.
      View in: PubMed, PubMed Central
    7. Cacchiarelli D, Trapnell C, Ziller MJ, Soumillon M, Cesana M, Karnik R, Donaghey J, Smith ZD, Ratanasirintrawoot S, Zhang X, Ho Sui SJ, Wu Z, Akopian V, Gifford C, Doench J, Rinn JL, Daley GQ, Meissner A, Lander ES, Mikkelsen TS. Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency. Cell. 2015 Jul 16; 162(2):412-424. PMID: 26186193; PMCID: PMC4511597.
      View in: PubMed, PubMed Central
    8. Matera JA, Wilson BK, Hernandez Gifford JA, Step DL, Krehbiel CR, Gifford C. Cattle with increased severity of bovine respiratory disease complex exhibit decreased capacity to protect against histone cytotoxicity. J Anim Sci. 2015 Apr; 93(4):1841-9. PMID: 26020205.
      View in: PubMed
    9. Liao J, Karnik R, Gu H, Ziller MJ, Clement K, Tsankov AM, Akopian V, Gifford C, Donaghey J, Galonska C, Pop R, Reyon D, Tsai SQ, Mallard W, Joung JK, Rinn JL, Gnirke A, Meissner A. Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells. Nat Genet. 2015 May; 47(5):469-78. PMID: 25822089; PMCID: PMC4414868.
      View in: PubMed, PubMed Central
    10. Ziller MJ, Edri R, Yaffe Y, Donaghey J, Pop R, Mallard W, Issner R, Gifford C, Goren A, Xing J, Gu H, Cacchiarelli D, Tsankov AM, Epstein C, Rinn JL, Mikkelsen TS, Kohlbacher O, Gnirke A, Bernstein BE, Elkabetz Y, Meissner A. Dissecting neural differentiation regulatory networks through epigenetic footprinting. Nature. 2015 Feb 19; 518(7539):355-359. PMID: 25533951; PMCID: PMC4336237.
      View in: PubMed, PubMed Central
    11. Gifford C, Ziller MJ, Gu H, Trapnell C, Donaghey J, Tsankov A, Shalek AK, Kelley DR, Shishkin AA, Issner R, Zhang X, Coyne M, Fostel JL, Holmes L, Meldrim J, Guttman M, Epstein C, Park H, Kohlbacher O, Rinn J, Gnirke A, Lander ES, Bernstein BE, Meissner A. Transcriptional and epigenetic dynamics during specification of human embryonic stem cells. Cell. 2013 May 23; 153(5):1149-63. PMID: 23664763; PMCID: PMC3709577.
      View in: PubMed, PubMed Central
    12. Gifford C, Meissner A. Epigenetic obstacles encountered by transcription factors: reprogramming against all odds. Curr Opin Genet Dev. 2012 Oct; 22(5):409-15. PMID: 22922161; PMCID: PMC3490009.
      View in: PubMed, PubMed Central
    13. Akopian V, Chan MM, Clement K, Galonska C, Gifford C, Lehtola E, Liao J, Samavarchi-Tehrani P, Sindhu C, Smith ZD, Tsankov AM, Webster J, Zhang Y, Ziller MJ, Meissner A. Epigenomics and chromatin dynamics. Genome Biol. 2012 Feb 24; 13(2):313. PMID: 22364154; PMCID: PMC3334565.
      View in: PubMed, PubMed Central
    14. Mougous JD, Gifford C, Ramsdell TL, Mekalanos JJ. Threonine phosphorylation post-translationally regulates protein secretion in Pseudomonas aeruginosa. Nat Cell Biol. 2007 Jul; 9(7):797-803. PMID: 17558395.
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    15. Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford C, Goodman AL, Joachimiak G, Ordoñez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ. A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. Science. 2006 Jun 09; 312(5779):1526-30. PMID: 16763151; PMCID: PMC2800167.
      View in: PubMed, PubMed Central
    16. Merfeld DM, Zupan LH, Gifford C. Neural processing of gravito-inertial cues in humans. II. Influence of the semicircular canals during eccentric rotation. J Neurophysiol. 2001 Apr; 85(4):1648-60. PMID: 11287488.
      View in: PubMed
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