Casey Gifford, PhD

Title(s)Staff Scientist, Business Service Ctr
SchoolChancellor/EVC/FAS
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Transcription factor protein interactomes reveal genetic determinants in heart disease. Cell. 2022 03 03; 185(5):794-814.e30. Gonzalez-Teran B, Pittman M, Felix F, Thomas R, Richmond-Buccola D, Hüttenhain R, Choudhary K, Moroni E, Costa MW, Huang Y, Padmanabhan A, Alexanian M, Lee CY, Maven BEJ, Samse-Knapp K, Morton SU, McGregor M, Gifford CA, Seidman JG, Seidman CE, Gelb BD, Colombo G, Conklin BR, Black BL, Bruneau BG, Krogan NJ, Pollard KS, Srivastava D. PMID: 35182466; PMCID: PMC8923057.
      View in: PubMed   Mentions:
    2. A transcriptional switch governs fibroblast activation in heart disease. Nature. 2021 07; 595(7867):438-443. Alexanian M, Przytycki PF, Micheletti R, Padmanabhan A, Ye L, Travers JG, Gonzalez-Teran B, Silva AC, Duan Q, Ranade SS, Felix F, Linares-Saldana R, Li L, Lee CY, Sadagopan N, Pelonero A, Huang Y, Andreoletti G, Jain R, McKinsey TA, Rosenfeld MG, Gifford CA, Pollard KS, Haldar SM, Srivastava D. PMID: 34163071; PMCID: PMC8341289.
      View in: PubMed   Mentions: 2     Fields:    
    3. Network-based screen in iPSC-derived cells reveals therapeutic candidate for heart valve disease. Science. 2021 02 12; 371(6530). Theodoris CV, Zhou P, Liu L, Zhang Y, Nishino T, Huang Y, Kostina A, Ranade SS, Gifford CA, Uspenskiy V, Malashicheva A, Ding S, Srivastava D. PMID: 33303684; PMCID: PMC7880903.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    4. Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects. Nature. 2019 08; 572(7767):120-124. de Soysa TY, Ranade SS, Okawa S, Ravichandran S, Huang Y, Salunga HT, Schricker A, Del Sol A, Gifford CA, Srivastava D. PMID: 31341279; PMCID: PMC6719697.
      View in: PubMed   Mentions: 38     Fields:    Translation:Animals
    5. Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming. Cell Stem Cell. 2019 07 03; 25(1):87-102.e9. Stone NR, Gifford CA, Thomas R, Pratt KJB, Samse-Knapp K, Mohamed TMA, Radzinsky EM, Schricker A, Ye L, Yu P, van Bemmel JG, Ivey KN, Pollard KS, Srivastava D. PMID: 31271750; PMCID: PMC6632093.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    6. Oligogenic inheritance of a human heart disease involving a genetic modifier. Science. 2019 05 31; 364(6443):865-870. Gifford CA, Ranade SS, Samarakoon R, Salunga HT, de Soysa TY, Huang Y, Zhou P, Elfenbein A, Wyman SK, Bui YK, Cordes Metzler KR, Ursell P, Ivey KN, Srivastava D. PMID: 31147515; PMCID: PMC6557373.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsCells
    7. Genetic determinants and epigenetic effects of pioneer-factor occupancy. Nat Genet. 2018 02; 50(2):250-258. Donaghey J, Thakurela S, Charlton J, Chen JS, Smith ZD, Gu H, Pop R, Clement K, Stamenova EK, Karnik R, Kelley DR, Gifford CA, Cacchiarelli D, Rinn JL, Gnirke A, Ziller MJ, Meissner A. PMID: 29358654; PMCID: PMC6517675.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansCells
    8. Differentiation of V2a interneurons from human pluripotent stem cells. Proc Natl Acad Sci U S A. 2017 05 09; 114(19):4969-4974. Butts JC, McCreedy DA, Martinez-Vargas JA, Mendoza-Camacho FN, Hookway TA, Gifford CA, Taneja P, Noble-Haeusslein L, McDevitt TC. PMID: 28438991; PMCID: PMC5441696.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    9. Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma. Stem Cell Reports. 2016 11 08; 7(5):983-997. Aguilar CA, Pop R, Shcherbina A, Watts A, Matheny RW, Cacchiarelli D, Han WM, Shin E, Nakhai SA, Jang YC, Carrigan CT, Gifford CA, Kottke MA, Cesana M, Lee J, Urso ML, Meissner A. PMID: 27773702; PMCID: PMC5106515.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    10. Heart disease modelling adds a Notch to its belt. Nat Cell Biol. 2016 Jan; 18(1):3-5. Gifford CA, Srivastava D. PMID: 26693916.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    11. A qPCR ScoreCard quantifies the differentiation potential of human pluripotent stem cells. Nat Biotechnol. 2015 Nov; 33(11):1182-92. Tsankov AM, Akopian V, Pop R, Chetty S, Gifford CA, Daheron L, Tsankova NM, Meissner A. PMID: 26501952; PMCID: PMC4636964.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    12. In vivo Monitoring of Transcriptional Dynamics After Lower-Limb Muscle Injury Enables Quantitative Classification of Healing. Sci Rep. 2015 Sep 18; 5:13885. Aguilar CA, Shcherbina A, Ricke DO, Pop R, Carrigan CT, Gifford CA, Urso ML, Kottke MA, Meissner A. PMID: 26381351; PMCID: PMC4585378.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    13. Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency. Cell. 2015 Jul 16; 162(2):412-424. Cacchiarelli D, Trapnell C, Ziller MJ, Soumillon M, Cesana M, Karnik R, Donaghey J, Smith ZD, Ratanasirintrawoot S, Zhang X, Ho Sui SJ, Wu Z, Akopian V, Gifford CA, Doench J, Rinn JL, Daley GQ, Meissner A, Lander ES, Mikkelsen TS. PMID: 26186193; PMCID: PMC4511597.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansCells
    14. Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells. Nat Genet. 2015 May; 47(5):469-78. Liao J, Karnik R, Gu H, Ziller MJ, Clement K, Tsankov AM, Akopian V, Gifford CA, Donaghey J, Galonska C, Pop R, Reyon D, Tsai SQ, Mallard W, Joung JK, Rinn JL, Gnirke A, Meissner A. PMID: 25822089; PMCID: PMC4414868.
      View in: PubMed   Mentions: 163     Fields:    Translation:HumansAnimalsCells
    15. Dissecting neural differentiation regulatory networks through epigenetic footprinting. Nature. 2015 Feb 19; 518(7539):355-359. Ziller MJ, Edri R, Yaffe Y, Donaghey J, Pop R, Mallard W, Issner R, Gifford CA, Goren A, Xing J, Gu H, Cachiarelli D, Tsankov A, Epstein C, Rinn JR, Mikkelsen TS, Kohlbacher O, Gnirke A, Bernstein BE, Elkabetz Y, Meissner A. PMID: 25533951; PMCID: PMC4336237.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansCells
    16. Transcriptional and epigenetic dynamics during specification of human embryonic stem cells. Cell. 2013 May 23; 153(5):1149-63. Gifford CA, Ziller MJ, Gu H, Trapnell C, Donaghey J, Tsankov A, Shalek AK, Kelley DR, Shishkin AA, Issner R, Zhang X, Coyne M, Fostel JL, Holmes L, Meldrim J, Guttman M, Epstein C, Park H, Kohlbacher O, Rinn J, Gnirke A, Lander ES, Bernstein BE, Meissner A. PMID: 23664763; PMCID: PMC3709577.
      View in: PubMed   Mentions: 202     Fields:    Translation:HumansCells
    17. Epigenetic obstacles encountered by transcription factors: reprogramming against all odds. Curr Opin Genet Dev. 2012 Oct; 22(5):409-15. Gifford CA, Meissner A. PMID: 22922161; PMCID: PMC3490009.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    18. Epigenomics and chromatin dynamics. Genome Biol. 2012 Feb 24; 13(2):313. Akopian V, Chan MM, Clement K, Galonska C, Gifford CA, Lehtola E, Liao J, Samavarchi-Tehrani P, Sindhu C, Smith ZD, Tsankov AM, Webster J, Zhang Y, Ziller MJ, Meissner A. PMID: 22364154; PMCID: PMC3334565.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    19. Epigenomics and chromatin dynamics. Genome Biology. 2012 Jan 1; 13(2):313. Akopian AV, Chan CM, Clement CK, Galonska GC, Gifford GC, Lehtola LE, Liao LJ, Samavarchi-Tehrani SP, Sindhu SC, Smith SZ, Tsankov TA, Webster WJ, Zhang ZY, Ziller ZM, Meissner MA. .
      View in: Publisher Site   Mentions:
    20. Threonine phosphorylation post-translationally regulates protein secretion in Pseudomonas aeruginosa. Nat Cell Biol. 2007 Jul; 9(7):797-803. Mougous JD, Gifford CA, Ramsdell TL, Mekalanos JJ. PMID: 17558395.
      View in: PubMed   Mentions: 142     Fields:    Translation:Cells
    21. A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. Science. 2006 Jun 09; 312(5779):1526-30. Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford CA, Goodman AL, Joachimiak G, Ordoñez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ. PMID: 16763151; PMCID: PMC2800167.
      View in: PubMed   Mentions: 462     Fields:    Translation:HumansAnimalsCells
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