Cecilia Noecker, PhD

Title(s)Postdoctoral Scholar, Hooper Foundation
SchoolSchool of Medicine
Address513 Parnassus Ave, HSW
San Francisco CA 94143
Phone415-502-3237
ORCID ORCID Icon0000-0003-1417-2383 Additional info
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    Collapse Biography 
    Collapse Education and Training
    University of Washington, Seattle, WAPhD03/2019Genome Sciences
    St. Olaf College, Northfield, MNBA05/2012Biology, statistics

    Collapse Research 
    Collapse Research Activities and Funding
    Systems-level analysis of the metabolism and ecology of genetically intractable gut bacteria
    NIH F32GM140808Jul 1, 2021 - Jun 30, 2023
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. MIMOSA2: A metabolic network-based tool for inferring mechanism-supported relationships in microbiome-metabolome data. Bioinformatics. 2022 Jan 06. Noecker C, Eng A, Muller E, Borenstein E. PMID: 34999748; PMCID: PMC8896604.
      View in: PubMed   Mentions:
    2. The East Asian gut microbiome is distinct from colocalized White subjects and connected to metabolic health. Elife. 2021 10 07; 10. Ang QY, Alba DL, Upadhyay V, Bisanz JE, Cai J, Lee HL, Barajas E, Wei G, Noecker C, Patterson AD, Koliwad SK, Turnbaugh PJ. PMID: 34617511; PMCID: PMC8612731.
      View in: PubMed   Mentions:    Fields:    
    3. Dissecting the contribution of host genetics and the microbiome in complex behaviors. Cell. 2021 04 01; 184(7):1740-1756.e16. Buffington SA, Dooling SW, Sgritta M, Noecker C, Murillo OD, Felice DF, Turnbaugh PJ, Costa-Mattioli M. PMID: 33705688; PMCID: PMC8996745.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    4. Patterns of salivary microbiota injury and oral mucositis in recipients of allogeneic hematopoietic stem cell transplantation. Blood Adv. 2020 07 14; 4(13):2912-2917. Shouval R, Eshel A, Dubovski B, Kuperman AA, Danylesko I, Fein JA, Fried S, Geva M, Kouniavski E, Neuman H, Armon-Omer A, Shahien R, Muller E, Noecker C, Borenstein E, Louzoun Y, Nagler A, Koren O. PMID: 32598476; PMCID: PMC7362373.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    5. A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria. Cell Host Microbe. 2020 06 10; 27(6):1001-1013.e9. Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, Allen-Vercoe E, Turnbaugh PJ. PMID: 32348781; PMCID: PMC7292766.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    6. Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies. mSystems. 2019 Dec 17; 4(6). Noecker C, Chiu HC, McNally CP, Borenstein E. PMID: 31848305; PMCID: PMC6918031.
      View in: PubMed   Mentions: 17  
    7. Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice. Cell. 2019 05 30; 177(6):1600-1618.e17. Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, Moradian A, Borenstein E, Jansson JK, Knight R, Metz TO, Lois C, Geschwind DH, Krajmalnik-Brown R, Mazmanian SK. PMID: 31150625; PMCID: PMC6993574.
      View in: PubMed   Mentions: 142     Fields:    Translation:HumansAnimalsCells
    8. The Skin Microbiome of the Neotropical Frog Craugastor fitzingeri: Inferring Potential Bacterial-Host-Pathogen Interactions From Metagenomic Data. Front Microbiol. 2018; 9:466. Rebollar EA, Gutiérrez-Preciado A, Noecker C, Eng A, Hughey MC, Medina D, Walke JB, Borenstein E, Jensen RV, Belden LK, Harris RN. PMID: 29615997; PMCID: PMC5869913.
      View in: PubMed   Mentions: 9  
    9. BURRITO: An Interactive Multi-Omic Tool for Visualizing Taxa-Function Relationships in Microbiome Data. Front Microbiol. 2018; 9:365. McNally CP, Eng A, Noecker C, Gagne-Maynard WC, Borenstein E. PMID: 29545787; PMCID: PMC5837987.
      View in: PubMed   Mentions: 13  
    10. Microbiome sharing between children, livestock and household surfaces in western Kenya. PLoS One. 2017; 12(2):e0171017. Mosites E, Sammons M, Otiang E, Eng A, Noecker C, Manor O, Hilton S, Thumbi SM, Onyango C, Garland-Lewis G, Call DR, Njenga MK, Wasserheit JN, Zambriski JA, Walson JL, Palmer GH, Montgomery J, Borenstein E, Omore R, Rabinowitz PM. PMID: 28152044; PMCID: PMC5289499.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    11. Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome. Nat Microbiol. 2016 Nov 28; 2:16221. Snijders AM, Langley SA, Kim YM, Brislawn CJ, Noecker C, Zink EM, Fansler SJ, Casey CP, Miller DR, Huang Y, Karpen GH, Celniker SE, Brown JB, Borenstein E, Jansson JK, Metz TO, Mao JH. PMID: 27892936.
      View in: PubMed   Mentions: 31     Fields:    Translation:Animals
    12. High-resolution characterization of the human microbiome. Transl Res. 2017 01; 179:7-23. Noecker C, McNally CP, Eng A, Borenstein E. PMID: 27513210; PMCID: PMC5164958.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    13. Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation. mSystems. 2016 Jan-Feb; 1(1). Noecker C, Eng A, Srinivasan S, Theriot CM, Young VB, Jansson JK, Fredricks DN, Borenstein E. PMID: 27239563; PMCID: PMC4883586.
      View in: PubMed   Mentions: 61  
    14. Getting Personal About Nutrition. Trends Mol Med. 2016 Feb; 22(2):83-85. Noecker C, Borenstein E. PMID: 26776092; PMCID: PMC4738147.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    15. Simple mathematical models do not accurately predict early SIV dynamics. Viruses. 2015 Mar 13; 7(3):1189-217. Noecker C, Schaefer K, Zaccheo K, Yang Y, Day J, Ganusov VV. PMID: 25781919; PMCID: PMC4379566.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    16. Contrasting associations of polymorphisms in FcγRIIa and DC-SIGN with the clinical presentation of dengue infection in a Mexican population. Acta Trop. 2014 Oct; 138:15-22. Noecker CA, Amaya-Larios IY, Galeana-Hernández M, Ramos-Castañeda J, Martínez-Vega RA. PMID: 24911936.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
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