Dibyendu Mondal, PhD

Title(s)Postdoctoral Scholar, Bioengineering
SchoolSchool of Pharmacy
Address1700 4th Street
San Francisco CA 94158
ORCID ORCID Icon0000-0002-5047-6985 Additional info
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    Collapse Biography 
    Collapse Education and Training
    Indian Institute of Technology, Bombay, Mumbai, IndiaMasters08/2015Chemistry
    University of Southern California, Los Angeles, USAPhD08/2020Chemistry

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Soluble TREM2 inhibits secondary nucleation of Aβ fibrillization and enhances cellular uptake of fibrillar Aβ. Proc Natl Acad Sci U S A. 2022 02 01; 119(5). Belsare KD, Wu H, Mondal D, Bond A, Castillo E, Jin J, Jo H, Roush AE, Pilla KB, Sali A, Condello C, DeGrado WF. PMID: 35082148; PMCID: PMC8812518.
      View in: PubMed   Mentions:
    2. Histidine protonation states are key in the LigI catalytic reaction mechanism. Proteins. 2022 01; 90(1):123-130. Zhao LN, Mondal D, Li W, Mu Y, Kaldis P. PMID: 34318530.
      View in: PubMed   Mentions:    Fields:    
    3. Exploring the Activation Process of the β2AR-Gs Complex. J Am Chem Soc. 2021 07 28; 143(29):11044-11051. Bai C, Wang J, Mondal D, Du Y, Ye RD, Warshel A. PMID: 34255502.
      View in: PubMed   Mentions:    Fields:    
    4. Exploring the Mechanism of Covalent Inhibition: Simulating the Binding Free Energy of α-Ketoamide Inhibitors of the Main Protease of SARS-CoV-2. Biochemistry. 2020 12 08; 59(48):4601-4608. Mondal D, Warshel A. PMID: 33205654; PMCID: PMC7688048.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    5. Exploring the activation pathway and Gi-coupling specificity of the μ-opioid receptor. Proc Natl Acad Sci U S A. 2020 10 20; 117(42):26218-26225. Mondal D, Kolev V, Warshel A. PMID: 33020275; PMCID: PMC7585030.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    6. Exploring the Proteolysis Mechanism of the Proteasomes. J Phys Chem B. 2020 07 09; 124(27):5626-5635. Saha A, Oanca G, Mondal D, Warshel A. PMID: 32498514; PMCID: PMC7913600.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    7. Combinatorial Approach for Exploring Conformational Space and Activation Barriers in Computer-Aided Enzyme Design. ACS Catal. 2020 Jun 05; 10(11):6002-6012. Mondal D, Kolev V, Warshel A. PMID: 34178420; PMCID: PMC8225234.
      View in: PubMed   Mentions:
    8. Exploring the Effectiveness of Binding Free Energy Calculations. J Phys Chem B. 2019 10 24; 123(42):8910-8915. Mondal D, Florian J, Warshel A. PMID: 31560539; PMCID: PMC7032235.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    9. Exploring alternative catalytic mechanisms of the Cas9 HNH domain. Proteins. 2020 02; 88(2):260-264. Zhao LN, Mondal D, Warshel A. PMID: 31390092; PMCID: PMC6942198.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    10. EF-Tu and EF-G are activated by allosteric effects. Proc Natl Acad Sci U S A. 2018 03 27; 115(13):3386-3391. Mondal D, Warshel A. PMID: 29531062; PMCID: PMC5879710.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    11. Exploring the Drug Resistance of HCV Protease. J Phys Chem B. 2017 07 20; 121(28):6831-6840. Jindal G, Mondal D, Warshel A. PMID: 28635289; PMCID: PMC6237193.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells