Dvir Aran, PhD
Biography Hebrew University of Jerusalem | PhD | 2014 | Computer Science/School of Medicine |
| 2015
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| 2018 | Gruss-Lipper Postdoctoral Fellow |
Overview Bibliographic
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Telwatte S, Morón-López S, Aran D, Kim P, Hsieh C, Joshi S, Montano M, Greene WC, Butte AJ, Wong JK, Yukl SA. Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency. Retrovirology. 2019 Nov 11; 16(1):32. PMID: 31711503.
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Tsur A, Batsry L, Toussia-Cohen S, Rosenstein MG, Barak O, Brezinov Y, Yoeli-Ullman R, Sivan E, Sirota M, Druzin ML, Stevenson DK, Blumenfeld YJ, Aran D. Development and validation of a machine learning model for prediction of shoulder dystocia. Ultrasound Obstet Gynecol. 2019 Oct 06. PMID: 31587401.
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Halkias J, Rackaityte E, Hillman SL, Aran D, Mendoza VF, Marshall LR, MacKenzie TC, Burt TD. CD161 contributes to prenatal immune suppression of IFN?-producing PLZF+ T cells. J Clin Invest. 2019 May 30; 130:3562-3577. PMID: 31145102.
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Aran D, Looney AP, Liu L, Wu E, Fong V, Hsu A, Chak S, Naikawadi RP, Wolters PJ, Abate AR, Butte AJ, Bhattacharya M. Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. Nat Immunol. 2019 02; 20(2):163-172. PMID: 30643263.
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Abraham Tsur, Linoy Batsry, Oren Barak, Yoav Brezinov, Shlomo Toussia-Cohen, Rakefet Yoeli-Ullman, Eyal Sivan, Yair J. Blumenfeld, Maurice L. Druzin, David K. Stevenson, Dvir Aran. 657: Improving the prediction of shoulder dystocia using artificial intelligence – a novel approach. American Journal of Obstetrics and Gynecology. 2019 Jan 1; 220(1):s435-s436.
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Sharpnack MF, Chen B, Aran D, Kosti I, Sharpnack DD, Carbone DP, Mallick P, Huang K. Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma. EBioMedicine. 2018 Jan; 27:167-175. PMID: 29273356.
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Aran D, Hu Z, Butte AJ. xCell: digitally portraying the tissue cellular heterogeneity landscape. Genome Biol. 2017 11 15; 18(1):220. PMID: 29141660.
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Aran D, Camarda R, Odegaard J, Paik H, Oskotsky B, Krings G, Goga A, Sirota M, Butte AJ. Comprehensive analysis of normal adjacent to tumor transcriptomes. Nat Commun. 2017 10 20; 8(1):1077. PMID: 29057876.
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Hadley D, Pan J, El-Sayed O, Aljabban J, Aljabban I, Azad TD, Hadied MO, Raza S, Rayikanti BA, Chen B, Paik H, Aran D, Spatz J, Himmelstein D, Panahiazar M, Bhattacharya S, Sirota M, Musen MA, Butte AJ. Precision annotation of digital samples in NCBI's gene expression omnibus. Sci Data. 2017 09 19; 4:170125. PMID: 28925997.
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Lasry A, Aran D, Butte AJ, Ben-Neriah Y. Cancer Cell-Autonomous Parainflammation Mimics Immune Cell Infiltration. Cancer Res. 2017 07 15; 77(14):3740-3744. PMID: 28667073.
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Aran D, Butte AJ. Digitally deconvolving the tumor microenvironment. Genome Biol. 2016 08 22; 17(1):175. PMID: 27549319.
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Aran D, Lasry A, Zinger A, Biton M, Pikarsky E, Hellman A, Butte AJ, Ben-Neriah Y. Widespread parainflammation in human cancer. Genome Biol. 2016 07 08; 17(1):145. PMID: 27386949.
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Kosti I, Jain N, Aran D, Butte AJ, Sirota M. Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues. Sci Rep. 2016 05 04; 6:24799. PMID: 27142790.
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Aran D, Abu-Remaileh M, Levy R, Meron N, Toperoff G, Edrei Y, Bergman Y, Hellman A. Embryonic Stem Cell (ES)-Specific Enhancers Specify the Expression Potential of ES Genes in Cancer. PLoS Genet. 2016 Feb; 12(2):e1005840. PMID: 26886256.
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Aran D, Sirota M, Butte AJ. Systematic pan-cancer analysis of tumour purity. Nat Commun. 2015 Dec 04; 6:8971. PMID: 26634437.
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Toperoff G, Kark JD, Aran D, Nassar H, Ahmad WA, Sinnreich R, Azaiza D, Glaser B, Hellman A. Premature aging of leukocyte DNA methylation is associated with type 2 diabetes prevalence. Clin Epigenetics. 2015; 7:35. PMID: 25829970.
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Audrey Lasry, Dvir Aran, Adar Zinger, Haya Hamza, Eliran Kadosh, Ela Elyada, Ariel Pribluda, Asaf Hellman, Moshe Oren, Eli Pikarsky, Yinon Ben-Neriah. S-6 Parainflammation in cancer. Cytokine. 2014 Nov 1; 70(1):22.
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Aran D, Hellman A. Unmasking risk loci: DNA methylation illuminates the biology of cancer predisposition: analyzing DNA methylation of transcriptional enhancers reveals missed regulatory links between cancer risk loci and genes. Bioessays. 2014 Feb; 36(2):184-90. PMID: 24277586.
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Raddatz G, Hagemann S, Aran D, Söhle J, Kulkarni PP, Kaderali L, Hellman A, Winnefeld M, Lyko F. Aging is associated with highly defined epigenetic changes in the human epidermis. Epigenetics Chromatin. 2013 Oct 31; 6(1):36. PMID: 24279375.
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Aran D, Hellman A. DNA methylation of transcriptional enhancers and cancer predisposition. Cell. 2013 Jul 03; 154(1):11-3. PMID: 23827668.
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Aran D, Sabato S, Hellman A. DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes. Genome Biol. 2013 Mar 12; 14(3):R21. PMID: 23497655.
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Toperoff G, Aran D, Kark JD, Rosenberg M, Dubnikov T, Nissan B, Wainstein J, Friedlander Y, Levy-Lahad E, Glaser B, Hellman A. Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood. Hum Mol Genet. 2012 Jan 15; 21(2):371-83. PMID: 21994764.
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Aran D, Toperoff G, Rosenberg M, Hellman A. Replication timing-related and gene body-specific methylation of active human genes. Hum Mol Genet. 2011 Feb 15; 20(4):670-80. PMID: 21112978.
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