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Dvir Aran, PhD

Title(s)Postdoctoral Scholar, Computational Health Scienc
SchoolSchool of Medicine
Phone650-714-9285
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    Collapse Biography 
    Collapse Education and Training
    Hebrew University of JerusalemPhD2014Computer Science/School of Medicine
    Collapse Awards and Honors
    2015  - 2018Gruss-Lipper Postdoctoral Fellow

    Collapse Overview 

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Aran D, Looney AP, Liu L, Wu E, Fong V, Hsu A, Chak S, Naikawadi RP, Wolters PJ, Abate AR, Butte AJ, Bhattacharya M. Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. Nat Immunol. 2019 Feb; 20(2):163-172. PMID: 30643263.
      View in: PubMed
    2. Sharpnack MF, Chen B, Aran D, Kosti I, Sharpnack DD, Carbone DP, Mallick P, Huang K. Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma. EBioMedicine. 2018 Jan; 27:167-175. PMID: 29273356.
      View in: PubMed
    3. Aran D, Hu Z, Butte AJ. xCell: digitally portraying the tissue cellular heterogeneity landscape. Genome Biol. 2017 11 15; 18(1):220. PMID: 29141660.
      View in: PubMed
    4. Aran D, Camarda R, Odegaard J, Paik H, Oskotsky B, Krings G, Goga A, Sirota M, Butte AJ. Comprehensive analysis of normal adjacent to tumor transcriptomes. Nat Commun. 2017 10 20; 8(1):1077. PMID: 29057876.
      View in: PubMed
    5. Hadley D, Pan J, El-Sayed O, Aljabban J, Aljabban I, Azad TD, Hadied MO, Raza S, Rayikanti BA, Chen B, Paik H, Aran D, Spatz J, Himmelstein D, Panahiazar M, Bhattacharya S, Sirota M, Musen MA, Butte AJ. Precision annotation of digital samples in NCBI's gene expression omnibus. Sci Data. 2017 09 19; 4:170125. PMID: 28925997.
      View in: PubMed
    6. Lasry A, Aran D, Butte AJ, Ben-Neriah Y. Cancer Cell-Autonomous Parainflammation Mimics Immune Cell Infiltration. Cancer Res. 2017 07 15; 77(14):3740-3744. PMID: 28667073.
      View in: PubMed
    7. Aran D, Butte AJ. Digitally deconvolving the tumor microenvironment. Genome Biol. 2016 08 22; 17(1):175. PMID: 27549319.
      View in: PubMed
    8. Aran D, Lasry A, Zinger A, Biton M, Pikarsky E, Hellman A, Butte AJ, Ben-Neriah Y. Widespread parainflammation in human cancer. Genome Biol. 2016 07 08; 17(1):145. PMID: 27386949; PMCID: PMC4937599.
    9. Kosti I, Jain N, Aran D, Butte AJ, Sirota M. Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues. Sci Rep. 2016 05 04; 6:24799. PMID: 27142790; PMCID: PMC4855174.
    10. Aran D, Abu-Remaileh M, Levy R, Meron N, Toperoff G, Edrei Y, Bergman Y, Hellman A. Embryonic Stem Cell (ES)-Specific Enhancers Specify the Expression Potential of ES Genes in Cancer. PLoS Genet. 2016 Feb; 12(2):e1005840. PMID: 26886256; PMCID: PMC4757527.
    11. Aran D, Sirota M, Butte AJ. Systematic pan-cancer analysis of tumour purity. Nat Commun. 2015 Dec 04; 6:8971. PMID: 26634437; PMCID: PMC4671203.
    12. Toperoff G, Kark JD, Aran D, Nassar H, Ahmad WA, Sinnreich R, Azaiza D, Glaser B, Hellman A. Premature aging of leukocyte DNA methylation is associated with type 2 diabetes prevalence. Clin Epigenetics. 2015; 7:35. PMID: 25829970; PMCID: PMC4379765.
    13. Aran D, Hellman A. Unmasking risk loci: DNA methylation illuminates the biology of cancer predisposition: analyzing DNA methylation of transcriptional enhancers reveals missed regulatory links between cancer risk loci and genes. Bioessays. 2014 Feb; 36(2):184-90. PMID: 24277586.
      View in: PubMed
    14. Raddatz G, Hagemann S, Aran D, Söhle J, Kulkarni PP, Kaderali L, Hellman A, Winnefeld M, Lyko F. Aging is associated with highly defined epigenetic changes in the human epidermis. Epigenetics Chromatin. 2013 Oct 31; 6(1):36. PMID: 24279375; PMCID: PMC3819645.
    15. Aran D, Hellman A. DNA methylation of transcriptional enhancers and cancer predisposition. Cell. 2013 Jul 03; 154(1):11-3. PMID: 23827668.
      View in: PubMed
    16. Aran D, Sabato S, Hellman A. DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes. Genome Biol. 2013 Mar 12; 14(3):R21. PMID: 23497655; PMCID: PMC4053839.
    17. Toperoff G, Aran D, Kark JD, Rosenberg M, Dubnikov T, Nissan B, Wainstein J, Friedlander Y, Levy-Lahad E, Glaser B, Hellman A. Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood. Hum Mol Genet. 2012 Jan 15; 21(2):371-83. PMID: 21994764; PMCID: PMC3276288.
    18. Aran D, Toperoff G, Rosenberg M, Hellman A. Replication timing-related and gene body-specific methylation of active human genes. Hum Mol Genet. 2011 Feb 15; 20(4):670-80. PMID: 21112978.
      View in: PubMed