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Fumitaka Inoue, PhD

Title(s)Assistant Researcher, Bioengineering
SchoolSchool of Pharmacy
Phone415-476-5166
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Inoue F, Kreimer A, Ashuach T, Ahituv N, Yosef N. Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction. Cell Stem Cell. 2019 Nov 07; 25(5):713-727.e10. PMID: 31631012.
      View in: PubMed
    2. Kircher M, Xiong C, Martin B, Schubach M, Inoue F, Bell RJA, Costello JF, Shendure J, Ahituv N. Saturation mutagenesis of twenty disease-associated regulatory elements at single base-pair resolution. Nat Commun. 2019 08 08; 10(1):3583. PMID: 31395865.
      View in: PubMed
    3. Shigaki D, Adato O, Adhikari AN, Dong S, Hawkins-Hooker A, Inoue F, Juven-Gershon T, Kenlay H, Martin B, Patra A, Penzar DD, Schubach M, Xiong C, Yan Z, Boyle AP, Kreimer A, Kulakovskiy IV, Reid J, Unger R, Yosef N, Shendure J, Ahituv N, Kircher M, Beer MA. Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay. Hum Mutat. 2019 09; 40(9):1280-1291. PMID: 31106481.
      View in: PubMed
    4. Inoue F, Eckalbar WL, Wang Y, Murphy KK, Matharu N, Vaisse C, Ahituv N. Genomic and epigenomic mapping of leptin-responsive neuronal populations involved in body weight regulation. Nat Metab. 2019 Apr; 1(4):475-484. PMID: 31535083.
      View in: PubMed
    5. Inoue F, Kircher M, Martin B, Cooper GM, Witten DM, McManus MT, Ahituv N, Shendure J. Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity. Genome Res. 2018 05; 28(5):766.3. PMID: 29717003.
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    6. Inoue F, Kircher M, Martin B, Cooper GM, Witten DM, McManus MT, Ahituv N, Shendure J. A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity. Genome Res. 2017 01; 27(1):38-52. PMID: 27831498.
      View in: PubMed
    7. Inoue F, Ahituv N. Decoding enhancers using massively parallel reporter assays. Genomics. 2015 Sep; 106(3):159-164. PMID: 26072433.
      View in: PubMed
    8. Smith RP, Taher L, Patwardhan RP, Kim MJ, Inoue F, Shendure J, Ovcharenko I, Ahituv N. Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model. Nat Genet. 2013 Sep; 45(9):1021-1028. PMID: 23892608.
      View in: PubMed
    9. Inoue F, Kurokawa D, Takahashi M, Aizawa S. Gbx2 directly restricts Otx2 expression to forebrain and midbrain, competing with class III POU factors. Mol Cell Biol. 2012 Jul; 32(13):2618-27. PMID: 22566684.
      View in: PubMed
    10. Suda Y, Kokura K, Kimura J, Kajikawa E, Inoue F, Aizawa S. The same enhancer regulates the earliest Emx2 expression in caudal forebrain primordium, subsequent expression in dorsal telencephalon and later expression in the cortical ventricular zone. Development. 2010 Sep 01; 137(17):2939-49. PMID: 20667915.
      View in: PubMed
    11. Kurokawa D, Ohmura T, Ogino H, Takeuchi M, Inoue A, Inoue F, Suda Y, Aizawa S. Evolutionary origin of the Otx2 enhancer for its expression in visceral endoderm. Dev Biol. 2010 Jun 01; 342(1):110-20. PMID: 20353765.
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    12. Parvin MS, Okuyama N, Inoue F, Islam ME, Kawakami A, Takeda H, Yamasu K. Autoregulatory loop and retinoic acid repression regulate pou2/pou5f1 gene expression in the zebrafish embryonic brain. Dev Dyn. 2008 May; 237(5):1373-88. PMID: 18407549.
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    13. Inoue F, Parvin MS, Yamasu K. Transcription of fgf8 is regulated by activating and repressive cis-elements at the midbrain-hindbrain boundary in zebrafish embryos. Dev Biol. 2008 Apr 15; 316(2):471-86. PMID: 18280464.
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    14. Inoue F, Nagayoshi S, Ota S, Islam ME, Tonou-Fujimori N, Odaira Y, Kawakami K, Yamasu K. Genomic organization, alternative splicing, and multiple regulatory regions of the zebrafish fgf8 gene. Dev Growth Differ. 2006 Sep; 48(7):447-62. PMID: 16961592.
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    15. Islam ME, Kikuta H, Inoue F, Kanai M, Kawakami A, Parvin MS, Takeda H, Yamasu K. Three enhancer regions regulate gbx2 gene expression in the isthmic region during zebrafish development. Mech Dev. 2006 Dec; 123(12):907-24. PMID: 17067785.
      View in: PubMed