Ho Kim, PhD

Title(s)Employee of Affiliated Org., Radiology
SchoolSchool of Medicine
Address550 16th. Street
San Francisco CA 94158
Phone415-502-1939
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    Collapse Biography 
    Collapse Awards and Honors
    Canadian Institutes of Health Research2015  - 2017Benting Postdoctoral Fellowships
    Fonds de la recherche en sante/ Health Research Funds in Quebec (FRSQ)2014  - 2016Post-doctoral fellowship
    Sleep 20132013Sleep Research Society Abstract Excellence Award
    10th Annual Meeting of Korean Sleep Research Society2013Best Poster presentation award
    the American Epilepsy Society2011Young Investigator Travel Award
    International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2011)2011Student Travel Award
    the American Epilepsy Society2010Young Investigator Travel Award
    Fonds de la recherche en sante/ Health Research Funds in Quebec (FRSQ)2009  - 2010Doctoral Training Awards
    Biomedical Engineering, McGill University2007Fellowship for returning graduate students

    Collapse Overview 
    Collapse Overview
    My research spans an interdisciplinary cross-section of medical image processing, and neuroscience covering clinical neurology and neuropsychiatry. In the fields of medical image processing and analysis, I have studied on multi-spectral image registration and segmentation, surface modeling of cortical/subcortical structures which are the prerequisite techniques to proceed the analysis of structural and functional brain imaging studies.
    I also applied various analytic frameworks, including cortical morphometry, voxel-based morphometry, deformation-based morphometry and structural network analysis, to assessment of brain structure in healthy conditions as well as pathological conditions, which often present anatomical variations beyond the range of normal structures.
    Here in UCSF radiology, I continue to expand aforementioned techniques to the analysis of fetal/neonatal brain MRIs, which has been challenged by tissue intensity variability, low tissue contrast, small brain size, moving artifact and etc.
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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Surface-based morphometry reveals caudate subnuclear structural damage in patients with premotor Huntington disease. Brain Imaging Behav. 2017 Oct; 11(5):1365-1372. Kim H, Kim JH, Possin KL, Winer J, Geschwind MD, Xu D, Hess CP. PMID: 27730480; PMCID: PMC5792064.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    2. Morphological alterations in amygdalo-hippocampal substructures in narcolepsy patients with cataplexy. Brain Imaging Behav. 2016 12; 10(4):984-994. Kim H, Suh S, Joo EY, Hong SB. PMID: 26446435.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    3. NEOCIVET: Towards accurate morphometry of neonatal gyrification and clinical applications in preterm newborns. Neuroimage. 2016 Sep; 138:28-42. Kim H, Lepage C, Maheshwary R, Jeon S, Evans AC, Hess CP, Barkovich AJ, Xu D. PMID: 27184202; PMCID: PMC4982765.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    4. Hindbrain regional growth in preterm newborns and its impairment in relation to brain injury. Hum Brain Mapp. 2016 Feb; 37(2):678-88. Kim H, Gano D, Ho ML, Guo XM, Unzueta A, Hess C, Ferriero DM, Xu D, Barkovich AJ. PMID: 26589992; PMCID: PMC5094861.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    5. Pyruvate to Lactate Metabolic Changes during Neurodevelopment Measured Dynamically Using Hyperpolarized 13C Imaging in Juvenile Murine Brain. Dev Neurosci. 2016; 38(1):34-40. Chen Y, Kim H, Bok R, Sukumar S, Mu X, Sheldon RA, Barkovich AJ, Ferriero DM, Xu D. PMID: 26550989; PMCID: PMC4732911.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    6. Effects of long-term treatment on brain volume in patients with obstructive sleep apnea syndrome. Hum Brain Mapp. 2016 Jan; 37(1):395-409. Kim H, Joo E, Suh S, Kim JH, Kim ST, Hong SB. PMID: 26503297; PMCID: PMC4715739.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    7. NEOCIVET: Extraction of cortical surface and analysis of neonatal gyrification using a modified CIVET pipeline. Medical Image Computing and Computer-Assisted Intervention. 2015; 9351:571-9. Kim H, Lepage C, Evans AC, Barkovich AJ, Xu D. View Publication.
    8. Cortical Thinning and Altered Cortico-Cortical Structural Covariance of the Default Mode Network in Patients with Persistent Insomnia Symptoms. Sleep. 2015; Aug(31). Kim H*, Suh S*, Dang-Vu TT, Joo E, Shin C .
    9. Accurate cortical tissue classification on MRI by modeling cortical folding patterns. Hum Brain Mapp. 2015 Sep; 36(9):3563-74. Kim H, Caldairou B, Hwang JW, Mansi T, Hong SJ, Bernasconi N, Bernasconi A. PMID: 26037453; PMCID: PMC6869288.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    10. Multivariate Hippocampal Subfield Analysis of Local MRI Intensity and Volume: Application to Temporal Lobe Epilepsy. Medical Image Computing and Computer-Assisted Intervention. 2014; 8674:170-178. Kim H, Bernhardt BC, Kulaga-Yoskovitz J, Caldairou B, Bernasconi B, Bernasconi N. View Publication.
    11. Automated detection of cortical dysplasia type II in MRI-negative epilepsy. Neurology. 2014 Jul 01; 83(1):48-55. Hong SJ, Kim H, Schrader D, Bernasconi N, Bernhardt BC, Bernasconi A. PMID: 24898923; PMCID: PMC4114179.
      View in: PubMed   Mentions: 46     Fields:    Translation:Humans
    12. Subfield specific vulnerability of the hippocampus to sleep disturbance and cognitive impairment in patients with chronic primary insomnia: MR local volumetry. Sleep. 2014; 37(7):1189-98. Kim H*, Joo EY*, Suh S, Hong SB .
    13. Patterns of subregional mesiotemporal disease progression in temporal lobe epilepsy. Neurology. Neurology. 2013; 81(21):1840-7. Kim H*, Bernhardt BC*, Bernasconi N.
    14. Disentangling hippocampal shape anomalies in epilepsy. Front Neurol. 2013; 4:131. Kim H, Mansi T, Bernasconi N. PMID: 24062718; PMCID: PMC3769634.
      View in: PubMed   Mentions: 13  
    15. Spatial patterns of water diffusion along white matter tracts in temporal lobe epilepsy. Neurology. 2012 Jul 31; 79(5):455-62. Concha L, Kim H, Bernasconi A, Bernhardt BC, Bernasconi N. PMID: 22815555; PMCID: PMC3405250.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    16. Surface-based multi-template automated hippocampal segmentation: application to temporal lobe epilepsy. Med Image Anal. 2012 Oct; 16(7):1445-55. Kim H, Mansi T, Bernasconi N, Bernasconi A. PMID: 22613821.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    17. Mapping thalamocortical network pathology in temporal lobe epilepsy. Neurology. 2012 Jan 10; 78(2):129-36. Bernhardt BC, Bernasconi N, Kim H, Bernasconi A. PMID: 22205759.
      View in: PubMed   Mentions: 40     Fields:    Translation:Humans
    18. Automatic hippocampal segmentation in temporal lobe epilepsy: impact of developmental abnormalities. Neuroimage. 2012 Feb 15; 59(4):3178-86. Kim H, Chupin M, Colliot O, Bernhardt BC, Bernasconi N, Bernasconi A. PMID: 22155377.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    19. Vertex-wise shape analysis of the hippocampus: disentangling positional differences from volume changes. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):352-9. Kim H, Mansi T, Bernasconi A, Bernasconi N. PMID: 21995048.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    20. Robust surface-based multi-template automated algorithm to segment healthy and pathological hippocampi. Med Image Comput Comput Assist Interv. 2011; 14(Pt 3):445-53. Kim H, Mansi T, Bernasconi N, Bernasconi A. PMID: 22003730.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    21. Increased temporolimbic cortical folding complexity in temporal lobe epilepsy. Neurology. 2011 Jan 11; 76(2):138-44. Voets NL, Bernhardt BC, Kim H, Yoon U, Bernasconi N. PMID: 21148116; PMCID: PMC3030232.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    22. Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. Neuroimage. 2009 Oct 01; 47(4):1476-86. Gerardin E, Chételat G, Chupin M, Cuingnet R, Desgranges B, Kim HS, Niethammer M, Dubois B, Lehéricy S, Garnero L, Eustache F, Colliot O, Alzheimer's Disease Neuroimaging Initiative. PMID: 19463957; PMCID: PMC3001345.
      View in: PubMed   Mentions: 99     Fields:    Translation:Humans
    23. Longitudinal and cross-sectional analysis of atrophy in pharmacoresistant temporal lobe epilepsy. Neurology. 2009 May 19; 72(20):1747-54. Bernhardt BC, Worsley KJ, Kim H, Evans AC, Bernasconi A, Bernasconi N. PMID: 19246420; PMCID: PMC2827310.
      View in: PubMed   Mentions: 85     Fields:    Translation:Humans
    24. Temporal lobe epilepsy: differential pattern of damage in temporopolar cortex and white matter. Hum Brain Mapp. 2008 Aug; 29(8):931-44. Sankar T, Bernasconi N, Kim H, Bernasconi A. PMID: 17636561; PMCID: PMC6870675.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    25. Basal temporal sulcal morphology in healthy controls and patients with temporal lobe epilepsy. Neurology. 2008 May 27; 70(22 Pt 2):2159-65. Kim H, Bernasconi N, Bernhardt B, Colliot O, Bernasconi A. PMID: 18505994.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    26. Surface-based vector analysis using heat equation interpolation: a new approach to quantify local hippocampal volume changes. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):1008-15. Kim H, Besson P, Colliot O, Bernasconi A, Bernasconi N. PMID: 18979844.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    27. ECG Acquisition and Management System for Knowledge Discovery in Database: Data Modeling, Design, and Implementation. Medical Data Analysis. 2002; 2526:79-85. Y. Cho, H. Kim, M.J. Jeon, D. Kang, H. Choi, J.M. Lee, I.Y. Kim, S.I. Kim. .
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