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Idit Kosti, PhD

TitlePostdoctoral Scholar
SchoolUCSF School of Medicine
DepartmentComputational Health Scienc
Address550 16th. Street
San Francisco CA 94158
Phone415-502-5766
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Volodin A, Kosti I, Goldberg AL, Cohen S. Myofibril breakdown during atrophy is a delayed response requiring the transcription factor PAX4 and desmin depolymerization. Proc Natl Acad Sci U S A. 2017 Jan 17. PMID: 28096335.
      View in: PubMed
    2. Kosti I, Jain N, Aran D, Butte AJ, Sirota M. Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues. Sci Rep. 2016; 6:24799. PMID: 27142790.
      View in: PubMed
    3. Singer M, Kosti I, Pachter L, Mandel-Gutfreund Y. A diverse epigenetic landscape at human exons with implication for expression. Nucleic Acids Res. 2015 Apr 20; 43(7):3498-508. PMID: 25765649; PMCID: PMC4402514.
      View in: PubMed, PubMed Central
    4. Paz I, Kosti I, Ares M, Cline M, Mandel-Gutfreund Y. RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res. 2014 Jul; 42(Web Server issue):W361-7. PMID: 24829458; PMCID: PMC4086114.
      View in: PubMed, PubMed Central
    5. Gupta SK, Kosti I, Plaut G, Pivko A, Tkacz ID, Cohen-Chalamish S, Biswas DK, Wachtel C, Waldman Ben-Asher H, Carmi S, Glaser F, Mandel-Gutfreund Y, Michaeli S. The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability. Nucleic Acids Res. 2013 Jul; 41(13):6577-94. PMID: 23666624; PMCID: PMC3711420.
      View in: PubMed, PubMed Central
    6. Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog. 2012; 8(12):e1003037. PMID: 23236275; PMCID: PMC3516569.
      View in: PubMed, PubMed Central
    7. Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, Monod M, Shelest E, Barton RC, Birch E, Brakhage AA, Chen Z, Gurr SJ, Heiman D, Heitman J, Kosti I, Rossi A, Saif S, Samalova M, Saunders CW, Shea T, Summerbell RC, Xu J, Young S, Zeng Q, Birren BW, Cuomo CA, White TC. Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection. MBio. 2012; 3(5):e00259-12. PMID: 22951933; PMCID: PMC3445971.
      View in: PubMed, PubMed Central
    8. Kosti I, Radivojac P, Mandel-Gutfreund Y. An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors. PLoS Comput Biol. 2012; 8(7):e1002603. PMID: 22844237; PMCID: PMC3405991.
      View in: PubMed, PubMed Central
    9. Edwards NC, Hing ZA, Perry A, Blaisdell A, Kopelman DB, Fathke R, Plum W, Newell J, Allen CE, S G, Shapiro A, Okunji C, Kosti I, Shomron N, Grigoryan V, Przytycka TM, Sauna ZE, Salari R, Mandel-Gutfreund Y, Komar AA, Kimchi-Sarfaty C. Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches. PLoS One. 2012; 7(6):e38864. PMID: 22768050; PMCID: PMC3387200.
      View in: PubMed, PubMed Central
    10. Mandel-Gutfreund Y, Kosti I, Larisch S. ARTS, the unusual septin: structural and functional aspects. Biol Chem. 2011 Aug; 392(8-9):783-90. PMID: 21824006.
      View in: PubMed
    11. Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol. 2011; 12(4):R40. PMID: 21501500; PMCID: PMC3218866.
      View in: PubMed, PubMed Central
    12. Paz I, Akerman M, Dror I, Kosti I, Mandel-Gutfreund Y. SFmap: a web server for motif analysis and prediction of splicing factor binding sites. Nucleic Acids Res. 2010 Jul; 38(Web Server issue):W281-5. PMID: 20501600; PMCID: PMC2896136.
      View in: PubMed, PubMed Central
    13. Kosti I, Mandel-Gutfreund Y, Glaser F, Horwitz BA. Comparative analysis of fungal protein kinases and associated domains. BMC Genomics. 2010; 11:133. PMID: 20178650; PMCID: PMC2838846.
      View in: PubMed, PubMed Central
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