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Idit Kosti, PhD

Title(s)Postdoctoral Scholar, Computational Health Scienc
SchoolSchool of Medicine
Address490 Illinois Street
San Francisco CA 94158
Phone415-502-5766
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19. Res Sq. 2021 Mar 30. PMID: 33821262.
      View in: PubMed   Mentions:
    2. Drugs in COVID19 clinical trials: Predicting transporter-mediated drug-drug interactions using in vitro assays and real-world data. Clin Pharmacol Ther. 2021 Mar 24. Yee SW, Vora B, Oskotsky TT, Zou L, Jakobsen S, Enogieru OJ, Koleske ML, Kosti I, Rödin M, Sirota M, Giacomini KM. PMID: 33759449.
      View in: PubMed   Mentions:    Fields:    
    3. Decreased Mortality Rate Among COVID-19 Patients Prescribed Statins: Data From Electronic Health Records in the US. Front Med (Lausanne). 2021; 8:639804. PMID: 33614688.
      View in: PubMed   Mentions:
    4. Data Integration for Immunology. Annual Review of Biomedical Data Science. 2020 Jul 20; 3(1):1-24. Silvia Pineda, Daniel G. Bunis, Idit Kosti, Marina Sirota. .
      View in: Publisher Site   Mentions:
    5. Meta-Analysis of Vaginal Microbiome Data Provides New Insights Into Preterm Birth. Front Microbiol. 2020; 11:476. Kosti I, Lyalina S, Pollard KS, Butte AJ, Sirota M. PMID: 32322240.
      View in: PubMed   Mentions:
    6. Electronic Medical Records Enable Precision Medicine Approaches for Celiac Disease. J Pediatr Gastroenterol Nutr. 2018 10; 67(4):434-435. Kosti I, Sirota M. PMID: 29746345.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. Meta-Analysis of Maternal and Fetal Transcriptomic Data Elucidates the Role of Adaptive and Innate Immunity in Preterm Birth. Front Immunol. 2018; 9:993. Vora B, Wang A, Kosti I, Huang H, Paranjpe I, Woodruff TJ, MacKenzie T, Sirota M. PMID: 29867970.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    8. Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma. EBioMedicine. 2018 Jan; 27:167-175. Sharpnack MF, Chen B, Aran D, Kosti I, Sharpnack DD, Carbone DP, Mallick P, Huang K. PMID: 29273356.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    9. Myofibril breakdown during atrophy is a delayed response requiring the transcription factor PAX4 and desmin depolymerization. Proc Natl Acad Sci U S A. 2017 02 21; 114(8):E1375-E1384. Volodin A, Kosti I, Goldberg AL, Cohen S. PMID: 28096335.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    10. Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues. Sci Rep. 2016 05 04; 6:24799. Kosti I, Jain N, Aran D, Butte AJ, Sirota M. PMID: 27142790.
      View in: PubMed   Mentions: 30     Fields:    Translation:Humans
    11. A diverse epigenetic landscape at human exons with implication for expression. Nucleic Acids Res. 2015 Apr 20; 43(7):3498-508. Singer M, Kosti I, Pachter L, Mandel-Gutfreund Y. PMID: 25765649.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    12. RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res. 2014 Jul; 42(Web Server issue):W361-7. Paz I, Kosti I, Ares M, Cline M, Mandel-Gutfreund Y. PMID: 24829458.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansAnimalsCells
    13. The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability. Nucleic Acids Res. 2013 Jul; 41(13):6577-94. Gupta SK, Kosti I, Plaut G, Pivko A, Tkacz ID, Cohen-Chalamish S, Biswas DK, Wachtel C, Waldman Ben-Asher H, Carmi S, Glaser F, Mandel-Gutfreund Y, Michaeli S. PMID: 23666624.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    14. Trichoderma genomes: a vast reservoir of potential elicitor proteins. Trichoderma: biology and applications. 2013 Jan 1; 195-208. B. A. Horwitz, I. Kosti, F. Glaser, M Mala. .
      View in: Publisher Site   Mentions:
    15. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog. 2012; 8(12):e1003037. Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV. PMID: 23236275.
      View in: PubMed   Mentions: 164     Fields:    Translation:AnimalsCells
    16. Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection. mBio. 2012; 3(5):e00259-12. Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, Monod M, Shelest E, Barton RC, Birch E, Brakhage AA, Chen Z, Gurr SJ, Heiman D, Heitman J, Kosti I, Rossi A, Saif S, Samalova M, Saunders CW, Shea T, Summerbell RC, Xu J, Young S, Zeng Q, Birren BW, Cuomo CA, White TC. PMID: 22951933.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansAnimals
    17. An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors. PLoS Comput Biol. 2012; 8(7):e1002603. Kosti I, Radivojac P, Mandel-Gutfreund Y. PMID: 22844237.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    18. Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches. PLoS One. 2012; 7(6):e38864. Edwards NC, Hing ZA, Perry A, Blaisdell A, Kopelman DB, Fathke R, Plum W, Newell J, Allen CE, S G, Shapiro A, Okunji C, Kosti I, Shomron N, Grigoryan V, Przytycka TM, Sauna ZE, Salari R, Mandel-Gutfreund Y, Komar AA, Kimchi-Sarfaty C. PMID: 22768050.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    19. ARTS, the unusual septin: structural and functional aspects. Biol Chem. 2011 Aug; 392(8-9):783-90. Mandel-Gutfreund Y, Kosti I, Larisch S. PMID: 21824006.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    20. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol. 2011; 12(4):R40. Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV. PMID: 21501500.
      View in: PubMed   Mentions: 152     Fields:    Translation:AnimalsCellsPHPublic Health
    21. SFmap: a web server for motif analysis and prediction of splicing factor binding sites. Nucleic Acids Res. 2010 Jul; 38(Web Server issue):W281-5. Paz I, Akerman M, Dror I, Kosti I, Mandel-Gutfreund Y. PMID: 20501600.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansCells
    22. Comparative analysis of fungal protein kinases and associated domains. BMC Genomics. 2010 Feb 24; 11:133. Kosti I, Mandel-Gutfreund Y, Glaser F, Horwitz BA. PMID: 20178650.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
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