Ilias Georgakopoulos Soares, PhD

Title(s)Postdoctoral Scholar, Bioengineering
SchoolSchool of Pharmacy
Address1550 Fourth St
San Francisco CA 94158
Phone--
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    University Of Cambridge, UKPhD2019Biological Sciences
    Imperial College London, UKBSc2014Biological Sciences
    National Technical University of Athens, GRBEng & MEngMechanical Engineering

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation. Genome Biol. 2022 07 18; 23(1):159. Georgakopoulos-Soares I, Chan CSY, Ahituv N, Hemberg M. PMID: 35851062; PMCID: PMC9290270.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    2. Secondary structures in RNA synthesis, splicing and translation. Comput Struct Biotechnol J. 2022; 20:2871-2884. Georgakopoulos-Soares I, Parada GE, Hemberg M. PMID: 35765654; PMCID: PMC9198270.
      View in: PubMed   Mentions:
    3. Alternative splicing modulation by G-quadruplexes. Nat Commun. 2022 05 03; 13(1):2404. Georgakopoulos-Soares I, Parada GE, Wong HY, Medhi R, Furlan G, Munita R, Miska EA, Kwok CK, Hemberg M. PMID: 35504902; PMCID: PMC9065059.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    4. High-throughput characterization of the role of non-B DNA motifs on promoter function. Cell Genom. 2022 Apr 13; 2(4). Georgakopoulos-Soares I, Victorino J, Parada GE, Agarwal V, Zhao J, Wong HY, Umar MI, Elor O, Muhwezi A, An JY, Sanders SJ, Kwok CK, Inoue F, Hemberg M, Ahituv N. PMID: 35573091; PMCID: PMC9105345.
      View in: PubMed   Mentions: 2  
    5. Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution. Genome Biol. 2021 08 25; 22(1):245. Georgakopoulos-Soares I, Yizhar-Barnea O, Mouratidis I, Hemberg M, Ahituv N. PMID: 34433494; PMCID: PMC8386077.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    6. Deletion of CTCF sites in the SHH locus alters enhancer-promoter interactions and leads to acheiropodia. Nat Commun. 2021 04 16; 12(1):2282. Ushiki A, Zhang Y, Xiong C, Zhao J, Georgakopoulos-Soares I, Kane L, Jamieson K, Bamshad MJ, Nickerson DA, University of Washington Center for Mendelian Genomics, Shen Y, Lettice LA, Silveira-Lucas EL, Petit F, Ahituv N. PMID: 33863876; PMCID: PMC8052326.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    7. Distinct genomic features across cytolytic subgroups in skin melanoma. Cancer Immunol Immunother. 2021 Nov; 70(11):3137-3154. Roufas C, Georgakopoulos-Soares I, Zaravinos A. PMID: 33779796; PMCID: PMC8505325.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    8. Molecular correlates of immune cytolytic subgroups in colorectal cancer by integrated genomics analysis. NAR Cancer. 2021 Mar; 3(1):zcab005. Roufas C, Georgakopoulos-Soares I, Zaravinos A. PMID: 34316699; PMCID: PMC8210146.
      View in: PubMed   Mentions:
    9. MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development. Genome Biol. 2021 01 22; 22(1):43. Parada GE, Munita R, Georgakopoulos-Soares I, Fernandes HJR, Kedlian VR, Metzakopian E, Andres ME, Miska EA, Hemberg M. PMID: 33482885; PMCID: PMC7821500.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    10. Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences. Nucleic Acids Res. 2021 01 11; 49(1):e4. Georgakopoulos-Soares I, Mouratidis I, Parada GE, Matharu N, Hemberg M, Ahituv N. PMID: 33211865; PMCID: PMC7797064.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    11. The Transcriptomic Response of the Murine Thyroid Gland to Iodide Overload and the Role of the Nrf2 Antioxidant System. Antioxidants (Basel). 2020 Sep 18; 9(9). Chartoumpekis DV, Ziros PG, Georgakopoulos-Soares I, Smith AAT, Marques AC, Ibberson M, A Kopp P, Habeos I, Trougakos IP, Khoo NKH, Sykiotis GP. PMID: 32961913; PMCID: PMC7555824.
      View in: PubMed   Mentions: 3  
    12. lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements. Nat Protoc. 2020 08; 15(8):2387-2412. Gordon MG, Inoue F, Martin B, Schubach M, Agarwal V, Whalen S, Feng S, Zhao J, Ashuach T, Ziffra R, Kreimer A, Georgakopoulos-Soares I, Yosef N, Ye CJ, Pollard KS, Shendure J, Kircher M, Ahituv N. PMID: 32641802; PMCID: PMC7550205.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    13. Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts. Nat Commun. 2020 04 24; 11(1):1980. Georgakopoulos-Soares I, Koh G, Momen SE, Jiricny J, Hemberg M, Nik-Zainal S. PMID: 32332764; PMCID: PMC7181645.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    14. EMT Factors and Metabolic Pathways in Cancer. Front Oncol. 2020; 10:499. Georgakopoulos-Soares I, Chartoumpekis DV, Kyriazopoulou V, Zaravinos A. PMID: 32318352; PMCID: PMC7154126.
      View in: PubMed   Mentions: 78  
    15. A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies. Nat Cancer. 2020 02; 1(2):249-263. Degasperi A, Amarante TD, Czarnecki J, Shooter S, Zou X, Glodzik D, Morganella S, Nanda AS, Badja C, Koh G, Momen SE, Georgakopoulos-Soares I, Dias JML, Young J, Memari Y, Davies H, Nik-Zainal S. PMID: 32118208; PMCID: PMC7048622.
      View in: PubMed   Mentions: 51  Translation:Humans
    16. Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis. Cell. 2019 03 07; 176(6):1282-1294.e20. Petljak M, Alexandrov LB, Brammeld JS, Price S, Wedge DC, Grossmann S, Dawson KJ, Ju YS, Iorio F, Tubio JMC, Koh CC, Georgakopoulos-Soares I, Rodríguez-Martín B, Otlu B, O'Meara S, Butler AP, Menzies A, Bhosle SG, Raine K, Jones DR, Teague JW, Beal K, Latimer C, O'Neill L, Zamora J, Anderson E, Patel N, Maddison M, Ng BL, Graham J, Garnett MJ, McDermott U, Nik-Zainal S, Campbell PJ, Stratton MR. PMID: 30849372; PMCID: PMC6424819.
      View in: PubMed   Mentions: 118     Fields:    Translation:HumansCells
    17. Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis. Genome Res. 2018 09; 28(9):1264-1271. Georgakopoulos-Soares I, Morganella S, Jain N, Hemberg M, Nik-Zainal S. PMID: 30104284; PMCID: PMC6120622.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    18. MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments. Bioinformatics. 2017 01 01; 33(1):137-138. Georgakopoulos-Soares I, Jain N, Gray JM, Hemberg M. PMID: 27605100; PMCID: PMC5198521.
      View in: PubMed   Mentions: 4     Fields:    
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