Jeff Wall, PhD, MS

Title(s)Professor, Epidemiology & Biostatistics
SchoolSchool of Medicine
Address513 Parnassus Ave, MSB
San Francisco CA 94117
Phone415-476-4063
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    Collapse Research 
    Collapse Research Activities and Funding
    Estimating fine scale changes in recombination rates across species
    NIH R01GM115433Aug 1, 2015 - Apr 30, 2019
    Role: Principal Investigator
    Development of a pedigreed baboon genome resource for biomedical research
    NIH R24OD017859Jul 1, 2014 - Jun 30, 2018
    Role: Principal Investigator
    Genomic Patterns of Polymorphism in Primates
    NIH R01HG005226May 28, 2010 - Apr 30, 2014
    Role: Principal Investigator
    Simulation algorithms for genome-wide data and application to admixed data
    NIH R01HG004049Aug 16, 2007 - Jun 30, 2011
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Response to Bakker et al. Curr Biol. 2022 Apr 25; 32(8):R358-R359. Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. PMID: 35472421.
      View in: PubMed   Mentions:
    2. High-resolution estimates of crossover and noncrossover recombination from a captive baboon colony. Genome Biol Evol. 2022 Mar 24. Wall JD, Robinson JA, Cox LA. PMID: 35325119.
      View in: PubMed   Mentions:
    3. Genomic signatures of high-altitude adaptation and chromosomal polymorphism in geladas. Nat Ecol Evol. 2022 Mar 24. Chiou KL, Janiak MC, Schneider-Crease IA, Sen S, Ayele F, Chuma IS, Knauf S, Lemma A, Signore AV, D'Ippolito AM, Abebe B, Haile AA, Kebede F, Fashing PJ, Nguyen N, McCann C, Houck ML, Wall JD, Burrell AS, Bergey CM, Rogers J, Phillips-Conroy JE, Jolly CJ, Melin AD, Storz JF, Lu A, Beehner JC, Bergman TJ, Snyder-Mackler N. PMID: 35332281.
      View in: PubMed   Mentions:
    4. Genome-wide diversity in the California condor tracks its prehistoric abundance and decline. Curr Biol. 2021 07 12; 31(13):2939-2946.e5. Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. PMID: 33989525.
      View in: PubMed   Mentions: 1     Fields:    
    5. Genomic Variation and Recent Population Histories of Spotted (Strix occidentalis) and Barred (Strix varia) Owls. Genome Biol Evol. 2021 05 07; 13(5). Fujito NT, Hanna ZR, Levy-Sakin M, Bowie RCK, Kwok PY, Dumbacher JP, Wall JD. PMID: 33764456; PMCID: PMC8120011.
      View in: PubMed   Mentions:    Fields:    
    6. Genetic profiles of 103,106 individuals in the Taiwan Biobank provide insights into the health and history of Han Chinese. NPJ Genom Med. 2021 Feb 11; 6(1):10. Wei CY, Yang JH, Yeh EC, Tsai MF, Kao HJ, Lo CZ, Chang LP, Lin WJ, Hsieh FJ, Belsare S, Bhaskar A, Su MW, Lee TC, Lin YL, Liu FT, Shen CY, Li LH, Chen CH, Wall JD, Wu JY, Kwok PY. PMID: 33574314; PMCID: PMC7878858.
      View in: PubMed   Mentions: 2  
    7. Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data. Gigascience. 2020 12 07; 9(12). Batra SS, Levy-Sakin M, Robinson J, Guillory J, Durinck S, Vilgalys TP, Kwok PY, Cox LA, Seshagiri S, Song YS, Wall JD. PMID: 33283855; PMCID: PMC7719865.
      View in: PubMed   Mentions: 2     Fields:    
    8. A comparison of humans and baboons suggests germline mutation rates do not track cell divisions. PLoS Biol. 2020 08; 18(8):e3000838. Wu FL, Strand AI, Cox LA, Ober C, Wall JD, Moorjani P, Przeworski M. PMID: 32804933; PMCID: PMC7467331.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    9. Identification of African-Specific Admixture between Modern and Archaic Humans. Am J Hum Genet. 2019 12 05; 105(6):1254-1261. Wall JD, Ratan A, Stawiski E, GenomeAsia 100K Consortium. PMID: 31809748; PMCID: PMC6904834.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    10. Evaluating the quality of the 1000 genomes project data. BMC Genomics. 2019 Aug 16; 20(1):620. Belsare S, Levy-Sakin M, Mostovoy Y, Durinck S, Chaudhuri S, Xiao M, Peterson AS, Kwok PY, Seshagiri S, Wall JD. PMID: 31416423; PMCID: PMC6696682.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    11. Analysis of 100 high-coverage genomes from a pedigreed captive baboon colony. Genome Res. 2019 05; 29(5):848-856. Robinson JA, Belsare S, Birnbaum S, Newman DE, Chan J, Glenn JP, Ferguson B, Cox LA, Wall JD. PMID: 30926611; PMCID: PMC6499309.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    12. Whole-Genome Analysis of Introgression Between the Spotted Owl and Barred Owl (Strix occidentalis and Strix varia, Respectively; Aves: Strigidae) in Western North America. G3 (Bethesda). 2018 12 10; 8(12):3945-3952. Hanna ZR, Dumbacher JP, Bowie RCK, Henderson JB, Wall JD. PMID: 30355766; PMCID: PMC6288836.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    13. Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans. Mol Biol Evol. 2018 Mar 01; 35(3):623-630. Jagoda E, Lawson DJ, Wall JD, Lambert D, Muller C, Westaway M, Leavesley M, Capellini TD, Mirazón Lahr M, Gerbault P, Thomas MG, Migliano AB, Willerslev E, Metspalu M, Pagani L. PMID: 29220488; PMCID: PMC5850494.
      View in: PubMed   Mentions: 15     Fields:    
    14. Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes. Genome Biol Evol. 2017 10 01; 9(10):2522-2545. Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, Mindell DP, Bowie RCK, DeRisi JL, Dumbacher JP. PMID: 28992302; PMCID: PMC5629816.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    15. Inferring Human Demographic Histories of Non-African Populations from Patterns of Allele Sharing. Am J Hum Genet. 2017 May 04; 100(5):766-772. Wall JD. PMID: 28475859; PMCID: PMC5420348.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    16. Genomic analyses inform on migration events during the peopling of Eurasia. Nature. 2016 Oct 13; 538(7624):238-242. Pagani L, Lawson DJ, Jagoda E, Mörseburg A, Eriksson A, Mitt M, Clemente F, Hudjashov G, DeGiorgio M, Saag L, Wall JD, Cardona A, Mägi R, Wilson Sayres MA, Kaewert S, Inchley C, Scheib CL, Järve M, Karmin M, Jacobs GS, Antao T, Iliescu FM, Kushniarevich A, Ayub Q, Tyler-Smith C, Xue Y, Yunusbayev B, Tambets K, Mallick CB, Saag L, Pocheshkhova E, Andriadze G, Muller C, Westaway MC, Lambert DM, Zoraqi G, Turdikulova S, Dalimova D, Sabitov Z, Sultana GNN, Lachance J, Tishkoff S, Momynaliev K, Isakova J, Damba LD, Gubina M, Nymadawa P, Evseeva I, Atramentova L, Utevska O, Ricaut FX, Brucato N, Sudoyo H, Letellier T, Cox MP, Barashkov NA, Skaro V, Mulahasanovic L, Primorac D, Sahakyan H, Mormina M, Eichstaedt CA, Lichman DV, Abdullah S, Chaubey G, Wee JTS, Mihailov E, Karunas A, Litvinov S, Khusainova R, Ekomasova N, Akhmetova V, Khidiyatova I, Marjanovic D, Yepiskoposyan L, Behar DM, Balanovska E, Metspalu A, Derenko M, Malyarchuk B, Voevoda M, Fedorova SA, Osipova LP, Lahr MM, Gerbault P, Leavesley M, Migliano AB, Petraglia M, Balanovsky O, Khusnutdinova EK, Metspalu E, Thomas MG, Manica A, Nielsen R, Villems R, Willerslev E, Kivisild T, Metspalu M. PMID: 27654910; PMCID: PMC5164938.
      View in: PubMed   Mentions: 98     Fields:    Translation:HumansAnimals
    17. A genomic history of Aboriginal Australia. Nature. 2016 Oct 13; 538(7624):207-214. Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, Subramanian S, Wright JL, Albrechtsen A, Barbieri C, Dupanloup I, Eriksson A, Margaryan A, Moltke I, Pugach I, Korneliussen TS, Levkivskyi IP, Moreno-Mayar JV, Ni S, Racimo F, Sikora M, Xue Y, Aghakhanian FA, Brucato N, Brunak S, Campos PF, Clark W, Ellingvåg S, Fourmile G, Gerbault P, Injie D, Koki G, Leavesley M, Logan B, Lynch A, Matisoo-Smith EA, McAllister PJ, Mentzer AJ, Metspalu M, Migliano AB, Murgha L, Phipps ME, Pomat W, Reynolds D, Ricaut FX, Siba P, Thomas MG, Wales T, Wall CM, Oppenheimer SJ, Tyler-Smith C, Durbin R, Dortch J, Manica A, Schierup MH, Foley RA, Lahr MM, Bowern C, Wall JD, Mailund T, Stoneking M, Nielsen R, Sandhu MS, Excoffier L, Lambert DM, Willerslev E. PMID: 27654914.
      View in: PubMed   Mentions: 86     Fields:    Translation:Humans
    18. Archaic admixture in human history. Curr Opin Genet Dev. 2016 Dec; 41:93-97. Wall JD, Yoshihara Caldeira Brandt D. PMID: 27662059.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    19. Detecting Recombination Hotspots from Patterns of Linkage Disequilibrium. G3 (Bethesda). 2016 08 09; 6(8):2265-71. Wall JD, Stevison LS. PMID: 27226166; PMCID: PMC4978882.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    20. Genomewide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons. Mol Ecol. 2016 07; 25(14):3469-83. Wall JD, Schlebusch SA, Alberts SC, Cox LA, Snyder-Mackler N, Nevonen KA, Carbone L, Tung J. PMID: 27145036; PMCID: PMC5306399.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    21. A hybrid approach for de novo human genome sequence assembly and phasing. Nat Methods. 2016 07; 13(7):587-90. Mostovoy Y, Levy-Sakin M, Lam J, Lam ET, Hastie AR, Marks P, Lee J, Chu C, Lin C, Džakula Ž, Cao H, Schlebusch SA, Giorda K, Schnall-Levin M, Wall JD, Kwok PY. PMID: 27159086; PMCID: PMC4927370.
      View in: PubMed   Mentions: 79     Fields:    Translation:Humans
    22. Corrigendum: Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies. Genome Res. 2016 05; 26(5):717.1. Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF. PMID: 27197244; PMCID: PMC4864460.
      View in: PubMed   Mentions: 1     Fields:    
    23. Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples. Genetics. 2016 06; 203(2):699-714. Snyder-Mackler N, Majoros WH, Yuan ML, Shaver AO, Gordon JB, Kopp GH, Schlebusch SA, Wall JD, Alberts SC, Mukherjee S, Zhou X, Tung J. PMID: 27098910; PMCID: PMC4896188.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    24. Transcriptomic and epigenomic characterization of the developing bat wing. Nat Genet. 2016 05; 48(5):528-36. Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, Wall JD, Illing N, Ahituv N. PMID: 27019111; PMCID: PMC4848140.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    25. Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection. Genome Res. 2016 Mar; 26(3):279-90. Hsieh P, Veeramah KR, Lachance J, Tishkoff SA, Wall JD, Hammer MF, Gutenkunst RN. PMID: 26888263; PMCID: PMC4772011.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimals
    26. Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies. Genome Res. 2016 Mar; 26(3):291-300. Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF. PMID: 26888264; PMCID: PMC4772012.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimals
    27. The Time Scale of Recombination Rate Evolution in Great Apes. Mol Biol Evol. 2016 Apr; 33(4):928-45. Stevison LS, Woerner AE, Kidd JM, Kelley JL, Veeramah KR, McManus KF, Great Ape Genome Project, Bustamante CD, Hammer MF, Wall JD. PMID: 26671457; PMCID: PMC5870646.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimalsCells
    28. Inference of gorilla demographic and selective history from whole-genome sequence data. Mol Biol Evol. 2015 Mar; 32(3):600-12. McManus KF, Kelley JL, Song S, Veeramah KR, Woerner AE, Stevison LS, Ryder OA, Ape Genome Project G, Kidd JM, Wall JD, Bustamante CD, Hammer MF. PMID: 25534031; PMCID: PMC4327160.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimals
    29. Paleogenomics. Genomic structure in Europeans dating back at least 36,200 years. Science. 2014 Nov 28; 346(6213):1113-8. Seguin-Orlando A, Korneliussen TS, Sikora M, Malaspinas AS, Manica A, Moltke I, Albrechtsen A, Ko A, Margaryan A, Moiseyev V, Goebel T, Westaway M, Lambert D, Khartanovich V, Wall JD, Nigst PR, Foley RA, Lahr MM, Nielsen R, Orlando L, Willerslev E. PMID: 25378462.
      View in: PubMed   Mentions: 97     Fields:    Translation:Humans
    30. Estimating genotype error rates from high-coverage next-generation sequence data. Genome Res. 2014 Nov; 24(11):1734-9. Wall JD, Tang LF, Zerbe B, Kvale MN, Kwok PY, Schaefer C, Risch N. PMID: 25304867; PMCID: PMC4216915.
      View in: PubMed   Mentions: 52     Fields:    Translation:Humans
    31. Gibbon genome and the fast karyotype evolution of small apes. Nature. 2014 Sep 11; 513(7517):195-201. Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, de Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, ten Hallers B, Terhune E, Thomas GW, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA. PMID: 25209798; PMCID: PMC4249732.
      View in: PubMed   Mentions: 100     Fields:    Translation:HumansAnimalsCells
    32. Exome capture from saliva produces high quality genomic and metagenomic data. BMC Genomics. 2014 Apr 04; 15:262. Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, Parham P, Hoal EG, Feldman MW, Pollard KS, Wall JD, Bustamante CD, Henn BM. PMID: 24708091; PMCID: PMC4051168.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    33. Great ape genetic diversity and population history. Nature. 2013 Jul 25; 499(7459):471-5. Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T. PMID: 23823723; PMCID: PMC3822165.
      View in: PubMed   Mentions: 277     Fields:    Translation:HumansAnimals
    34. Higher levels of neanderthal ancestry in East Asians than in Europeans. Genetics. 2013 May; 194(1):199-209. Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M. PMID: 23410836; PMCID: PMC3632468.
      View in: PubMed   Mentions: 81     Fields:    Translation:HumansAnimals
    35. Multiple instances of ancient balancing selection shared between humans and chimpanzees. Science. 2013 Mar 29; 339(6127):1578-82. Leffler EM, Gao Z, Pfeifer S, Ségurel L, Auton A, Venn O, Bowden R, Bontrop R, Wall JD, Sella G, Donnelly P, McVean G, Przeworski M. PMID: 23413192; PMCID: PMC3612375.
      View in: PubMed   Mentions: 118     Fields:    Translation:HumansAnimalsCells
    36. Function and regulation of AUTS2, a gene implicated in autism and human evolution. PLoS Genet. 2013; 9(1):e1003221. Oksenberg N, Stevison L, Wall JD, Ahituv N. PMID: 23349641; PMCID: PMC3547868.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimalsCells
    37. Incomplete lineage sorting is common in extant gibbon genera. PLoS One. 2013; 8(1):e53682. Wall JD, Kim SK, Luca F, Carbone L, Mootnick AR, de Jong PJ, Di Rienzo A. PMID: 23341974; PMCID: PMC3544895.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimals
    38. Great ape genomics. ILAR J. 2013; 54(2):82-90. Wall JD. PMID: 24174434; PMCID: PMC3814392.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    39. Population genetic structure and origins of Native Hawaiians in the multiethnic cohort study. PLoS One. 2012; 7(11):e47881. Kim SK, Gignoux CR, Wall JD, Lum-Jones A, Wang H, Haiman CA, Chen GK, Henderson BE, Kolonel LN, Le Marchand L, Stram DO, Saxena R, Cheng I. PMID: 23144833; PMCID: PMC3492381.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    40. Paleopopulation genetics. Annu Rev Genet. 2012; 46:635-49. Wall JD, Slatkin M. PMID: 22994357; PMCID: PMC5102055.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    41. Genetic evidence for archaic admixture in Africa. Proc Natl Acad Sci U S A. 2011 Sep 13; 108(37):15123-8. Hammer MF, Woerner AE, Mendez FL, Watkins JC, Wall JD. PMID: 21896735; PMCID: PMC3174671.
      View in: PubMed   Mentions: 80     Fields:    Translation:HumansAnimalsCells
    42. Patterns of genetic variation within and between Gibbon species. Mol Biol Evol. 2011 Aug; 28(8):2211-8. Kim SK, Carbone L, Becquet C, Mootnick AR, Li DJ, de Jong PJ, Wall JD. PMID: 21368318; PMCID: PMC3144381.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    43. Genetic variation in Native Americans, inferred from Latino SNP and resequencing data. Mol Biol Evol. 2011 Aug; 28(8):2231-7. Wall JD, Jiang R, Gignoux C, Chen GK, Eng C, Huntsman S, Marjoram P. PMID: 21368315; PMCID: PMC3144384.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    44. The ratio of human X chromosome to autosome diversity is positively correlated with genetic distance from genes. Nat Genet. 2010 Oct; 42(10):830-1. Hammer MF, Woerner AE, Mendez FL, Watkins JC, Cox MP, Wall JD. PMID: 20802480.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansCells
    45. Genomics through the lens of next-generation sequencing. Genome Biol. 2010; 11(6):306. Capra JA, Carbone L, Riesenfeld SJ, Wall JD. PMID: 20587080; PMCID: PMC2911104.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    46. Autosomal resequence data reveal Late Stone Age signals of population expansion in sub-Saharan African foraging and farming populations. PLoS One. 2009 Jul 29; 4(7):e6366. Cox MP, Morales DA, Woerner AE, Sozanski J, Wall JD, Hammer MF. PMID: 19641603; PMCID: PMC2712685.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    47. Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. PLoS Genet. 2009 Jun; 5(6):e1000538. Carbone L, Harris RA, Vessere GM, Mootnick AR, Humphray S, Rogers J, Kim SK, Wall JD, Martin D, Jurka J, Milosavljevic A, de Jong PJ. PMID: 19557196; PMCID: PMC2695003.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimalsCells
    48. Detecting ancient admixture and estimating demographic parameters in multiple human populations. Mol Biol Evol. 2009 Aug; 26(8):1823-7. Wall JD, Lohmueller KE, Plagnol V. PMID: 19420049; PMCID: PMC2734152.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimals
    49. Haplotypic background of a private allele at high frequency in the Americas. Mol Biol Evol. 2009 May; 26(5):995-1016. Schroeder KB, Jakobsson M, Crawford MH, Schurr TG, Boca SM, Conrad DF, Tito RY, Osipova LP, Tarskaia LA, Zhadanov SI, Wall JD, Pritchard JK, Malhi RS, Smith DG, Rosenberg NA. PMID: 19221006; PMCID: PMC2734135.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    50. Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow. BMC Genet. 2008 Nov 27; 9:76. Cox MP, Woerner AE, Wall JD, Hammer MF. PMID: 19038041; PMCID: PMC2620354.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    51. Fast and flexible simulation of DNA sequence data. Genome Res. 2009 Jan; 19(1):136-42. Chen GK, Marjoram P, Wall JD. PMID: 19029539; PMCID: PMC2612967.
      View in: PubMed   Mentions: 161     Fields:    Translation:Humans
    52. Sex-biased evolutionary forces shape genomic patterns of human diversity. PLoS Genet. 2008 Sep 26; 4(9):e1000202. Hammer MF, Mendez FL, Cox MP, Woerner AE, Wall JD. PMID: 18818765; PMCID: PMC2538571.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansCells
    53. A novel DNA sequence database for analyzing human demographic history. Genome Res. 2008 Aug; 18(8):1354-61. Wall JD, Cox MP, Mendez FL, Woerner A, Severson T, Hammer MF. PMID: 18493019; PMCID: PMC2493425.
      View in: PubMed   Mentions: 47     Fields:    Translation:Humans
    54. Exploring population genetic models with recombination using efficient forward-time simulations. Genetics. 2008 Apr; 178(4):2417-27. Padhukasahasram B, Marjoram P, Wall JD, Bustamante CD, Nordborg M. PMID: 18430959; PMCID: PMC2323826.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    55. Inconsistencies in Neanderthal genomic DNA sequences. PLoS Genet. 2007 Oct; 3(10):1862-6. Wall JD, Kim SK. PMID: 17937503; PMCID: PMC2014787.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansAnimals
    56. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat Genet. 2006 Nov; 38(11):1251-60. Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK. PMID: 17057719.
      View in: PubMed   Mentions: 222     Fields:    Translation:Humans
    57. Archaic admixture in the human genome. Curr Opin Genet Dev. 2006 Dec; 16(6):606-10. Wall JD, Hammer MF. PMID: 17027252.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimals
    58. Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. Genetics. 2006 Nov; 174(3):1517-28. Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. PMID: 16980396; PMCID: PMC1667054.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    59. Possible ancestral structure in human populations. PLoS Genet. 2006 Jul; 2(7):e105. Plagnol V, Wall JD. PMID: 16895447; PMCID: PMC1523253.
      View in: PubMed   Mentions: 98     Fields:    Translation:HumansAnimals
    60. Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana. Genetics. 2006 Apr; 172(4):2441-8. Plagnol V, Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. PMID: 16299388; PMCID: PMC1456404.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    61. The signature of positive selection on standing genetic variation. Evolution. 2005 Nov; 59(11):2312-23. Przeworski M, Coop G, Wall JD. PMID: 16396172.
      View in: PubMed   Mentions: 201     Fields:    
    62. The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol. 2005 Jul; 3(7):e196. Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H, Bakker E, Calabrese P, Gladstone J, Goyal R, Jakobsson M, Kim S, Morozov Y, Padhukasahasram B, Plagnol V, Rosenberg NA, Shah C, Wall JD, Wang J, Zhao K, Kalbfleisch T, Schulz V, Kreitman M, Bergelson J. PMID: 15907155; PMCID: PMC1135296.
      View in: PubMed   Mentions: 411     Fields:    Translation:Animals
    63. Estimating recombination rates using three-site likelihoods. Genetics. 2004 Jul; 167(3):1461-73. Wall JD. PMID: 15280255; PMCID: PMC1470930.
      View in: PubMed   Mentions: 17     Fields:    
    64. Close look at gene conversion hot spots. Nat Genet. 2004 Feb; 36(2):114-5. Wall JD. PMID: 14752518.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    65. Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates. Am J Hum Genet. 2003 Dec; 73(6):1330-40. Wall JD, Frisse LA, Hudson RR, Di Rienzo A. PMID: 14628290; PMCID: PMC1180398.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansAnimalsCells
    66. Linkage disequilibrium patterns across a recombination gradient in African Drosophila melanogaster. Genetics. 2003 Nov; 165(3):1289-305. Andolfatto P, Wall JD. PMID: 14668383; PMCID: PMC1462864.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    67. Assessing the performance of the haplotype block model of linkage disequilibrium. Am J Hum Genet. 2003 Sep; 73(3):502-15. Wall JD, Pritchard JK. PMID: 12916017; PMCID: PMC1180676.
      View in: PubMed   Mentions: 47     Fields:    
    68. Haplotype blocks and linkage disequilibrium in the human genome. Nat Rev Genet. 2003 Aug; 4(8):587-97. Wall JD, Pritchard JK. PMID: 12897771.
      View in: PubMed   Mentions: 179     Fields:    Translation:Humans
    69. Estimating ancestral population sizes and divergence times. Genetics. 2003 Jan; 163(1):395-404. Wall JD. PMID: 12586724; PMCID: PMC1462435.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansAnimals
    70. Testing models of selection and demography in Drosophila simulans. Genetics. 2002 Sep; 162(1):203-16. Wall JD, Andolfatto P, Przeworski M. PMID: 12242234; PMCID: PMC1462246.
      View in: PubMed   Mentions: 95     Fields:    Translation:AnimalsCells
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