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Response to Bakker et al. Curr Biol. 2022 Apr 25; 32(8):R358-R359.
Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. PMID: 35472421.
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PubMed Mentions:
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High-resolution estimates of crossover and noncrossover recombination from a captive baboon colony. Genome Biol Evol. 2022 Mar 24.
Wall JD, Robinson JA, Cox LA. PMID: 35325119.
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PubMed Mentions:
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Genomic signatures of high-altitude adaptation and chromosomal polymorphism in geladas. Nat Ecol Evol. 2022 Mar 24.
Chiou KL, Janiak MC, Schneider-Crease IA, Sen S, Ayele F, Chuma IS, Knauf S, Lemma A, Signore AV, D'Ippolito AM, Abebe B, Haile AA, Kebede F, Fashing PJ, Nguyen N, McCann C, Houck ML, Wall JD, Burrell AS, Bergey CM, Rogers J, Phillips-Conroy JE, Jolly CJ, Melin AD, Storz JF, Lu A, Beehner JC, Bergman TJ, Snyder-Mackler N. PMID: 35332281.
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PubMed Mentions:
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Genome-wide diversity in the California condor tracks its prehistoric abundance and decline. Curr Biol. 2021 07 12; 31(13):2939-2946.e5.
Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. PMID: 33989525.
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PubMed Mentions:
1 Fields:
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Genomic Variation and Recent Population Histories of Spotted (Strix occidentalis) and Barred (Strix varia) Owls. Genome Biol Evol. 2021 05 07; 13(5).
Fujito NT, Hanna ZR, Levy-Sakin M, Bowie RCK, Kwok PY, Dumbacher JP, Wall JD. PMID: 33764456; PMCID: PMC8120011.
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PubMed Mentions: Fields:
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Genetic profiles of 103,106 individuals in the Taiwan Biobank provide insights into the health and history of Han Chinese. NPJ Genom Med. 2021 Feb 11; 6(1):10.
Wei CY, Yang JH, Yeh EC, Tsai MF, Kao HJ, Lo CZ, Chang LP, Lin WJ, Hsieh FJ, Belsare S, Bhaskar A, Su MW, Lee TC, Lin YL, Liu FT, Shen CY, Li LH, Chen CH, Wall JD, Wu JY, Kwok PY. PMID: 33574314; PMCID: PMC7878858.
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PubMed Mentions:
2
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Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data. Gigascience. 2020 12 07; 9(12).
Batra SS, Levy-Sakin M, Robinson J, Guillory J, Durinck S, Vilgalys TP, Kwok PY, Cox LA, Seshagiri S, Song YS, Wall JD. PMID: 33283855; PMCID: PMC7719865.
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PubMed Mentions:
2 Fields:
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A comparison of humans and baboons suggests germline mutation rates do not track cell divisions. PLoS Biol. 2020 08; 18(8):e3000838.
Wu FL, Strand AI, Cox LA, Ober C, Wall JD, Moorjani P, Przeworski M. PMID: 32804933; PMCID: PMC7467331.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimalsCells
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Identification of African-Specific Admixture between Modern and Archaic Humans. Am J Hum Genet. 2019 12 05; 105(6):1254-1261.
Wall JD, Ratan A, Stawiski E, GenomeAsia 100K Consortium. PMID: 31809748; PMCID: PMC6904834.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimals
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Evaluating the quality of the 1000 genomes project data. BMC Genomics. 2019 Aug 16; 20(1):620.
Belsare S, Levy-Sakin M, Mostovoy Y, Durinck S, Chaudhuri S, Xiao M, Peterson AS, Kwok PY, Seshagiri S, Wall JD. PMID: 31416423; PMCID: PMC6696682.
View in:
PubMed Mentions:
8 Fields:
Translation:
Humans
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Analysis of 100 high-coverage genomes from a pedigreed captive baboon colony. Genome Res. 2019 05; 29(5):848-856.
Robinson JA, Belsare S, Birnbaum S, Newman DE, Chan J, Glenn JP, Ferguson B, Cox LA, Wall JD. PMID: 30926611; PMCID: PMC6499309.
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PubMed Mentions:
5 Fields:
Translation:
Animals
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Whole-Genome Analysis of Introgression Between the Spotted Owl and Barred Owl (Strix occidentalis and Strix varia, Respectively; Aves: Strigidae) in Western North America. G3 (Bethesda). 2018 12 10; 8(12):3945-3952.
Hanna ZR, Dumbacher JP, Bowie RCK, Henderson JB, Wall JD. PMID: 30355766; PMCID: PMC6288836.
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PubMed Mentions:
1 Fields:
Translation:
Animals
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Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans. Mol Biol Evol. 2018 Mar 01; 35(3):623-630.
Jagoda E, Lawson DJ, Wall JD, Lambert D, Muller C, Westaway M, Leavesley M, Capellini TD, Mirazón Lahr M, Gerbault P, Thomas MG, Migliano AB, Willerslev E, Metspalu M, Pagani L. PMID: 29220488; PMCID: PMC5850494.
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PubMed Mentions:
15 Fields:
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Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes. Genome Biol Evol. 2017 10 01; 9(10):2522-2545.
Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, Mindell DP, Bowie RCK, DeRisi JL, Dumbacher JP. PMID: 28992302; PMCID: PMC5629816.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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Inferring Human Demographic Histories of Non-African Populations from Patterns of Allele Sharing. Am J Hum Genet. 2017 May 04; 100(5):766-772.
Wall JD. PMID: 28475859; PMCID: PMC5420348.
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PubMed Mentions:
5 Fields:
Translation:
Humans
-
Genomic analyses inform on migration events during the peopling of Eurasia. Nature. 2016 Oct 13; 538(7624):238-242.
Pagani L, Lawson DJ, Jagoda E, Mörseburg A, Eriksson A, Mitt M, Clemente F, Hudjashov G, DeGiorgio M, Saag L, Wall JD, Cardona A, Mägi R, Wilson Sayres MA, Kaewert S, Inchley C, Scheib CL, Järve M, Karmin M, Jacobs GS, Antao T, Iliescu FM, Kushniarevich A, Ayub Q, Tyler-Smith C, Xue Y, Yunusbayev B, Tambets K, Mallick CB, Saag L, Pocheshkhova E, Andriadze G, Muller C, Westaway MC, Lambert DM, Zoraqi G, Turdikulova S, Dalimova D, Sabitov Z, Sultana GNN, Lachance J, Tishkoff S, Momynaliev K, Isakova J, Damba LD, Gubina M, Nymadawa P, Evseeva I, Atramentova L, Utevska O, Ricaut FX, Brucato N, Sudoyo H, Letellier T, Cox MP, Barashkov NA, Skaro V, Mulahasanovic L, Primorac D, Sahakyan H, Mormina M, Eichstaedt CA, Lichman DV, Abdullah S, Chaubey G, Wee JTS, Mihailov E, Karunas A, Litvinov S, Khusainova R, Ekomasova N, Akhmetova V, Khidiyatova I, Marjanovic D, Yepiskoposyan L, Behar DM, Balanovska E, Metspalu A, Derenko M, Malyarchuk B, Voevoda M, Fedorova SA, Osipova LP, Lahr MM, Gerbault P, Leavesley M, Migliano AB, Petraglia M, Balanovsky O, Khusnutdinova EK, Metspalu E, Thomas MG, Manica A, Nielsen R, Villems R, Willerslev E, Kivisild T, Metspalu M. PMID: 27654910; PMCID: PMC5164938.
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PubMed Mentions:
98 Fields:
Translation:
HumansAnimals
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A genomic history of Aboriginal Australia. Nature. 2016 Oct 13; 538(7624):207-214.
Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, Subramanian S, Wright JL, Albrechtsen A, Barbieri C, Dupanloup I, Eriksson A, Margaryan A, Moltke I, Pugach I, Korneliussen TS, Levkivskyi IP, Moreno-Mayar JV, Ni S, Racimo F, Sikora M, Xue Y, Aghakhanian FA, Brucato N, Brunak S, Campos PF, Clark W, Ellingvåg S, Fourmile G, Gerbault P, Injie D, Koki G, Leavesley M, Logan B, Lynch A, Matisoo-Smith EA, McAllister PJ, Mentzer AJ, Metspalu M, Migliano AB, Murgha L, Phipps ME, Pomat W, Reynolds D, Ricaut FX, Siba P, Thomas MG, Wales T, Wall CM, Oppenheimer SJ, Tyler-Smith C, Durbin R, Dortch J, Manica A, Schierup MH, Foley RA, Lahr MM, Bowern C, Wall JD, Mailund T, Stoneking M, Nielsen R, Sandhu MS, Excoffier L, Lambert DM, Willerslev E. PMID: 27654914.
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PubMed Mentions:
86 Fields:
Translation:
Humans
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Archaic admixture in human history. Curr Opin Genet Dev. 2016 Dec; 41:93-97.
Wall JD, Yoshihara Caldeira Brandt D. PMID: 27662059.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimals
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Detecting Recombination Hotspots from Patterns of Linkage Disequilibrium. G3 (Bethesda). 2016 08 09; 6(8):2265-71.
Wall JD, Stevison LS. PMID: 27226166; PMCID: PMC4978882.
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PubMed Mentions:
6 Fields:
Translation:
Humans
-
Genomewide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons. Mol Ecol. 2016 07; 25(14):3469-83.
Wall JD, Schlebusch SA, Alberts SC, Cox LA, Snyder-Mackler N, Nevonen KA, Carbone L, Tung J. PMID: 27145036; PMCID: PMC5306399.
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PubMed Mentions:
17 Fields:
Translation:
Animals
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A hybrid approach for de novo human genome sequence assembly and phasing. Nat Methods. 2016 07; 13(7):587-90.
Mostovoy Y, Levy-Sakin M, Lam J, Lam ET, Hastie AR, Marks P, Lee J, Chu C, Lin C, Džakula Ž, Cao H, Schlebusch SA, Giorda K, Schnall-Levin M, Wall JD, Kwok PY. PMID: 27159086; PMCID: PMC4927370.
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PubMed Mentions:
79 Fields:
Translation:
Humans
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Corrigendum: Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies. Genome Res. 2016 05; 26(5):717.1.
Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF. PMID: 27197244; PMCID: PMC4864460.
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PubMed Mentions:
1 Fields:
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Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples. Genetics. 2016 06; 203(2):699-714.
Snyder-Mackler N, Majoros WH, Yuan ML, Shaver AO, Gordon JB, Kopp GH, Schlebusch SA, Wall JD, Alberts SC, Mukherjee S, Zhou X, Tung J. PMID: 27098910; PMCID: PMC4896188.
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PubMed Mentions:
22 Fields:
Translation:
Animals
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Transcriptomic and epigenomic characterization of the developing bat wing. Nat Genet. 2016 05; 48(5):528-36.
Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, Wall JD, Illing N, Ahituv N. PMID: 27019111; PMCID: PMC4848140.
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PubMed Mentions:
25 Fields:
Translation:
AnimalsCells
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Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection. Genome Res. 2016 Mar; 26(3):279-90.
Hsieh P, Veeramah KR, Lachance J, Tishkoff SA, Wall JD, Hammer MF, Gutenkunst RN. PMID: 26888263; PMCID: PMC4772011.
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PubMed Mentions:
20 Fields:
Translation:
HumansAnimals
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Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies. Genome Res. 2016 Mar; 26(3):291-300.
Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF. PMID: 26888264; PMCID: PMC4772012.
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PubMed Mentions:
26 Fields:
Translation:
HumansAnimals
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The Time Scale of Recombination Rate Evolution in Great Apes. Mol Biol Evol. 2016 Apr; 33(4):928-45.
Stevison LS, Woerner AE, Kidd JM, Kelley JL, Veeramah KR, McManus KF, Great Ape Genome Project, Bustamante CD, Hammer MF, Wall JD. PMID: 26671457; PMCID: PMC5870646.
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PubMed Mentions:
36 Fields:
Translation:
HumansAnimalsCells
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Inference of gorilla demographic and selective history from whole-genome sequence data. Mol Biol Evol. 2015 Mar; 32(3):600-12.
McManus KF, Kelley JL, Song S, Veeramah KR, Woerner AE, Stevison LS, Ryder OA, Ape Genome Project G, Kidd JM, Wall JD, Bustamante CD, Hammer MF. PMID: 25534031; PMCID: PMC4327160.
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PubMed Mentions:
17 Fields:
Translation:
HumansAnimals
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Paleogenomics. Genomic structure in Europeans dating back at least 36,200 years. Science. 2014 Nov 28; 346(6213):1113-8.
Seguin-Orlando A, Korneliussen TS, Sikora M, Malaspinas AS, Manica A, Moltke I, Albrechtsen A, Ko A, Margaryan A, Moiseyev V, Goebel T, Westaway M, Lambert D, Khartanovich V, Wall JD, Nigst PR, Foley RA, Lahr MM, Nielsen R, Orlando L, Willerslev E. PMID: 25378462.
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PubMed Mentions:
97 Fields:
Translation:
Humans
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Estimating genotype error rates from high-coverage next-generation sequence data. Genome Res. 2014 Nov; 24(11):1734-9.
Wall JD, Tang LF, Zerbe B, Kvale MN, Kwok PY, Schaefer C, Risch N. PMID: 25304867; PMCID: PMC4216915.
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PubMed Mentions:
52 Fields:
Translation:
Humans
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Gibbon genome and the fast karyotype evolution of small apes. Nature. 2014 Sep 11; 513(7517):195-201.
Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, de Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, ten Hallers B, Terhune E, Thomas GW, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA. PMID: 25209798; PMCID: PMC4249732.
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PubMed Mentions:
100 Fields:
Translation:
HumansAnimalsCells
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Exome capture from saliva produces high quality genomic and metagenomic data. BMC Genomics. 2014 Apr 04; 15:262.
Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, Parham P, Hoal EG, Feldman MW, Pollard KS, Wall JD, Bustamante CD, Henn BM. PMID: 24708091; PMCID: PMC4051168.
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PubMed Mentions:
12 Fields:
Translation:
Humans
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Great ape genetic diversity and population history. Nature. 2013 Jul 25; 499(7459):471-5.
Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T. PMID: 23823723; PMCID: PMC3822165.
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PubMed Mentions:
277 Fields:
Translation:
HumansAnimals
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Higher levels of neanderthal ancestry in East Asians than in Europeans. Genetics. 2013 May; 194(1):199-209.
Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M. PMID: 23410836; PMCID: PMC3632468.
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PubMed Mentions:
81 Fields:
Translation:
HumansAnimals
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Multiple instances of ancient balancing selection shared between humans and chimpanzees. Science. 2013 Mar 29; 339(6127):1578-82.
Leffler EM, Gao Z, Pfeifer S, Ségurel L, Auton A, Venn O, Bowden R, Bontrop R, Wall JD, Sella G, Donnelly P, McVean G, Przeworski M. PMID: 23413192; PMCID: PMC3612375.
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PubMed Mentions:
118 Fields:
Translation:
HumansAnimalsCells
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Function and regulation of AUTS2, a gene implicated in autism and human evolution. PLoS Genet. 2013; 9(1):e1003221.
Oksenberg N, Stevison L, Wall JD, Ahituv N. PMID: 23349641; PMCID: PMC3547868.
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PubMed Mentions:
50 Fields:
Translation:
HumansAnimalsCells
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Incomplete lineage sorting is common in extant gibbon genera. PLoS One. 2013; 8(1):e53682.
Wall JD, Kim SK, Luca F, Carbone L, Mootnick AR, de Jong PJ, Di Rienzo A. PMID: 23341974; PMCID: PMC3544895.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimals
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Great ape genomics. ILAR J. 2013; 54(2):82-90.
Wall JD. PMID: 24174434; PMCID: PMC3814392.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimalsCells
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Population genetic structure and origins of Native Hawaiians in the multiethnic cohort study. PLoS One. 2012; 7(11):e47881.
Kim SK, Gignoux CR, Wall JD, Lum-Jones A, Wang H, Haiman CA, Chen GK, Henderson BE, Kolonel LN, Le Marchand L, Stram DO, Saxena R, Cheng I. PMID: 23144833; PMCID: PMC3492381.
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PubMed Mentions:
11 Fields:
Translation:
Humans
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Paleopopulation genetics. Annu Rev Genet. 2012; 46:635-49.
Wall JD, Slatkin M. PMID: 22994357; PMCID: PMC5102055.
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PubMed Mentions:
7 Fields:
Translation:
HumansAnimalsCells
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Genetic evidence for archaic admixture in Africa. Proc Natl Acad Sci U S A. 2011 Sep 13; 108(37):15123-8.
Hammer MF, Woerner AE, Mendez FL, Watkins JC, Wall JD. PMID: 21896735; PMCID: PMC3174671.
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PubMed Mentions:
80 Fields:
Translation:
HumansAnimalsCells
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Patterns of genetic variation within and between Gibbon species. Mol Biol Evol. 2011 Aug; 28(8):2211-8.
Kim SK, Carbone L, Becquet C, Mootnick AR, Li DJ, de Jong PJ, Wall JD. PMID: 21368318; PMCID: PMC3144381.
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PubMed Mentions:
17 Fields:
Translation:
AnimalsCells
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Genetic variation in Native Americans, inferred from Latino SNP and resequencing data. Mol Biol Evol. 2011 Aug; 28(8):2231-7.
Wall JD, Jiang R, Gignoux C, Chen GK, Eng C, Huntsman S, Marjoram P. PMID: 21368315; PMCID: PMC3144384.
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PubMed Mentions:
15 Fields:
Translation:
Humans
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The ratio of human X chromosome to autosome diversity is positively correlated with genetic distance from genes. Nat Genet. 2010 Oct; 42(10):830-1.
Hammer MF, Woerner AE, Mendez FL, Watkins JC, Cox MP, Wall JD. PMID: 20802480.
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PubMed Mentions:
51 Fields:
Translation:
HumansCells
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Genomics through the lens of next-generation sequencing. Genome Biol. 2010; 11(6):306.
Capra JA, Carbone L, Riesenfeld SJ, Wall JD. PMID: 20587080; PMCID: PMC2911104.
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PubMed Mentions:
1 Fields:
Translation:
HumansAnimals
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Autosomal resequence data reveal Late Stone Age signals of population expansion in sub-Saharan African foraging and farming populations. PLoS One. 2009 Jul 29; 4(7):e6366.
Cox MP, Morales DA, Woerner AE, Sozanski J, Wall JD, Hammer MF. PMID: 19641603; PMCID: PMC2712685.
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PubMed Mentions:
19 Fields:
Translation:
Humans
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Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. PLoS Genet. 2009 Jun; 5(6):e1000538.
Carbone L, Harris RA, Vessere GM, Mootnick AR, Humphray S, Rogers J, Kim SK, Wall JD, Martin D, Jurka J, Milosavljevic A, de Jong PJ. PMID: 19557196; PMCID: PMC2695003.
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PubMed Mentions:
39 Fields:
Translation:
HumansAnimalsCells
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Detecting ancient admixture and estimating demographic parameters in multiple human populations. Mol Biol Evol. 2009 Aug; 26(8):1823-7.
Wall JD, Lohmueller KE, Plagnol V. PMID: 19420049; PMCID: PMC2734152.
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PubMed Mentions:
49 Fields:
Translation:
HumansAnimals
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Haplotypic background of a private allele at high frequency in the Americas. Mol Biol Evol. 2009 May; 26(5):995-1016.
Schroeder KB, Jakobsson M, Crawford MH, Schurr TG, Boca SM, Conrad DF, Tito RY, Osipova LP, Tarskaia LA, Zhadanov SI, Wall JD, Pritchard JK, Malhi RS, Smith DG, Rosenberg NA. PMID: 19221006; PMCID: PMC2734135.
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PubMed Mentions:
18 Fields:
Translation:
HumansCells
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Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow. BMC Genet. 2008 Nov 27; 9:76.
Cox MP, Woerner AE, Wall JD, Hammer MF. PMID: 19038041; PMCID: PMC2620354.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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Fast and flexible simulation of DNA sequence data. Genome Res. 2009 Jan; 19(1):136-42.
Chen GK, Marjoram P, Wall JD. PMID: 19029539; PMCID: PMC2612967.
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PubMed Mentions:
161 Fields:
Translation:
Humans
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Sex-biased evolutionary forces shape genomic patterns of human diversity. PLoS Genet. 2008 Sep 26; 4(9):e1000202.
Hammer MF, Mendez FL, Cox MP, Woerner AE, Wall JD. PMID: 18818765; PMCID: PMC2538571.
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PubMed Mentions:
66 Fields:
Translation:
HumansCells
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A novel DNA sequence database for analyzing human demographic history. Genome Res. 2008 Aug; 18(8):1354-61.
Wall JD, Cox MP, Mendez FL, Woerner A, Severson T, Hammer MF. PMID: 18493019; PMCID: PMC2493425.
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PubMed Mentions:
47 Fields:
Translation:
Humans
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Exploring population genetic models with recombination using efficient forward-time simulations. Genetics. 2008 Apr; 178(4):2417-27.
Padhukasahasram B, Marjoram P, Wall JD, Bustamante CD, Nordborg M. PMID: 18430959; PMCID: PMC2323826.
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PubMed Mentions:
25 Fields:
Translation:
HumansCells
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Inconsistencies in Neanderthal genomic DNA sequences. PLoS Genet. 2007 Oct; 3(10):1862-6.
Wall JD, Kim SK. PMID: 17937503; PMCID: PMC2014787.
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PubMed Mentions:
40 Fields:
Translation:
HumansAnimals
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A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat Genet. 2006 Nov; 38(11):1251-60.
Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK. PMID: 17057719.
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PubMed Mentions:
222 Fields:
Translation:
Humans
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Archaic admixture in the human genome. Curr Opin Genet Dev. 2006 Dec; 16(6):606-10.
Wall JD, Hammer MF. PMID: 17027252.
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PubMed Mentions:
17 Fields:
Translation:
HumansAnimals
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Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. Genetics. 2006 Nov; 174(3):1517-28.
Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. PMID: 16980396; PMCID: PMC1667054.
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PubMed Mentions:
14 Fields:
Translation:
Humans
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Possible ancestral structure in human populations. PLoS Genet. 2006 Jul; 2(7):e105.
Plagnol V, Wall JD. PMID: 16895447; PMCID: PMC1523253.
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PubMed Mentions:
98 Fields:
Translation:
HumansAnimals
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Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana. Genetics. 2006 Apr; 172(4):2441-8.
Plagnol V, Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. PMID: 16299388; PMCID: PMC1456404.
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PubMed Mentions:
14 Fields:
Translation:
Animals
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The signature of positive selection on standing genetic variation. Evolution. 2005 Nov; 59(11):2312-23.
Przeworski M, Coop G, Wall JD. PMID: 16396172.
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PubMed Mentions:
201 Fields:
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The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol. 2005 Jul; 3(7):e196.
Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H, Bakker E, Calabrese P, Gladstone J, Goyal R, Jakobsson M, Kim S, Morozov Y, Padhukasahasram B, Plagnol V, Rosenberg NA, Shah C, Wall JD, Wang J, Zhao K, Kalbfleisch T, Schulz V, Kreitman M, Bergelson J. PMID: 15907155; PMCID: PMC1135296.
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PubMed Mentions:
411 Fields:
Translation:
Animals
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Estimating recombination rates using three-site likelihoods. Genetics. 2004 Jul; 167(3):1461-73.
Wall JD. PMID: 15280255; PMCID: PMC1470930.
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PubMed Mentions:
17 Fields:
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Close look at gene conversion hot spots. Nat Genet. 2004 Feb; 36(2):114-5.
Wall JD. PMID: 14752518.
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PubMed Mentions:
12 Fields:
Translation:
Humans
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Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates. Am J Hum Genet. 2003 Dec; 73(6):1330-40.
Wall JD, Frisse LA, Hudson RR, Di Rienzo A. PMID: 14628290; PMCID: PMC1180398.
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PubMed Mentions:
45 Fields:
Translation:
HumansAnimalsCells
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Linkage disequilibrium patterns across a recombination gradient in African Drosophila melanogaster. Genetics. 2003 Nov; 165(3):1289-305.
Andolfatto P, Wall JD. PMID: 14668383; PMCID: PMC1462864.
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PubMed Mentions:
38 Fields:
Translation:
AnimalsCells
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Assessing the performance of the haplotype block model of linkage disequilibrium. Am J Hum Genet. 2003 Sep; 73(3):502-15.
Wall JD, Pritchard JK. PMID: 12916017; PMCID: PMC1180676.
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PubMed Mentions:
47 Fields:
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Haplotype blocks and linkage disequilibrium in the human genome. Nat Rev Genet. 2003 Aug; 4(8):587-97.
Wall JD, Pritchard JK. PMID: 12897771.
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PubMed Mentions:
179 Fields:
Translation:
Humans
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Estimating ancestral population sizes and divergence times. Genetics. 2003 Jan; 163(1):395-404.
Wall JD. PMID: 12586724; PMCID: PMC1462435.
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PubMed Mentions:
53 Fields:
Translation:
HumansAnimals
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Testing models of selection and demography in Drosophila simulans. Genetics. 2002 Sep; 162(1):203-16.
Wall JD, Andolfatto P, Przeworski M. PMID: 12242234; PMCID: PMC1462246.
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PubMed Mentions:
95 Fields:
Translation:
AnimalsCells