Jessica Allen, PhD

Title(s)Academic Coordinator, Biochemistry and Biophysics
SchoolSchool of Medicine
Address100 Medical Center Way
San Francisco CA 94143
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Population Genetics and Biogeography of the Lungwort Lichen in North America Support Distinct Eastern and Western Gene Pools. Am J Bot. 2021 Oct 11. Allen JL, McMullin RT, Wiersma YF, Scheidegger C. PMID: 34634140.
      View in: PubMed   Mentions:    Fields:    
    2. Young adults recruit similar motor modules across walking, turning, and chair transfers. Physiol Rep. 2021 Sep; 9(18):e15050. Carey HD, Liss DJ, Allen JL. PMID: 34558203.
      View in: PubMed   Mentions:    Fields:    
    3. Copy number alterations identify a smoking-associated expression signature predictive of poor outcome in head and neck squamous cell carcinoma. Cancer Genet. 2021 Aug; 256-257:136-148. Papenberg BW, Ingles J, Gao S, Feng J, Allen JL, Markwell SM, Interval ET, Montague PA, Wen S, Weed SA. PMID: 34130230.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. A BAFF/APRIL axis regulates obesogenic diet-driven weight gain. Nat Commun. 2021 05 18; 12(1):2911. Chan CC, Harley ITW, Pfluger PT, Trompette A, Stankiewicz TE, Allen JL, Moreno-Fernandez ME, Damen MSMA, Oates JR, Alarcon PC, Doll JR, Flick MJ, Flick LM, Sanchez-Gurmaches J, Mukherjee R, Karns R, Helmrath M, Inge TH, Weisberg SP, Pamp SJ, Relman DA, Seeley RJ, Tschöp MH, Karp CL, Divanovic S. PMID: 34006859.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    5. Generalization of motor module recruitment across standing reactive balance and walking is associated with beam walking performance in young adults. Gait Posture. 2020 10; 82:242-247. Allen JL, Carey HD, Ting LH, Sawers A. PMID: 32979703.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    6. Reorganization of motor modules for standing reactive balance recovery following pyridoxine-induced large-fiber peripheral sensory neuropathy in cats. J Neurophysiol. 2020 09 01; 124(3):868-882. Payne AM, Sawers A, Allen JL, Stapley PJ, Macpherson JM, Ting LH. PMID: 32783597.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    7. Disparate survival of late-stage male oropharyngeal cancer in Appalachia. Sci Rep. 2020 07 15; 10(1):11612. Papenberg BW, Allen JL, Markwell SM, Interval ET, Montague PA, Johnson CJ, Weed SA. PMID: 32669588.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    8. Pain-Reducing Effects of Physical Therapist-Delivered Interventions: A Systematic Review of Randomized Trials Among Older Adults With Dementia. J Geriatr Phys Ther. 2020 Jul/Sep; 43(3):159-169. Coronado RA, Albers HE, Allen JL, Clarke RG, Estrada VA, Simon CB, Galloway RV, Fisher SR. PMID: 30998563.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. Complete, high-quality genomes from long-read metagenomic sequencing of two wolf lichen thalli reveals enigmatic genome architecture. Genomics. 2020 09; 112(5):3150-3156. McKenzie SK, Walston RF, Allen JL. PMID: 32504651.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    10. Computational Design of FastFES Treatment to Improve Propulsive Force Symmetry During Post-stroke Gait: A Feasibility Study. Front Neurorobot. 2019; 13:80. Sauder NR, Meyer AJ, Allen JL, Ting LH, Kesar TM, Fregly BJ. PMID: 31632261.
      View in: PubMed   Mentions: 2  
    11. Adaptation of the group A Streptococcus adhesin Scl1 to bind fibronectin type III repeats within wound-associated extracellular matrix: implications for cancer therapy. Mol Microbiol. 2019 09; 112(3):800-819. McNitt DH, Choi SJ, Allen JL, Hames RA, Weed SA, Van De Water L, Berisio R, Lukomski S. PMID: 31145503.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    12. Machine-learning to stratify diabetic patients using novel cardiac biomarkers and integrative genomics. Cardiovasc Diabetol. 2019 06 11; 18(1):78. Hathaway QA, Roth SM, Pinti MV, Sprando DC, Kunovac A, Durr AJ, Cook CC, Fink GK, Cheuvront TB, Grossman JH, Aljahli GA, Taylor AD, Giromini AP, Allen JL, Hollander JM. PMID: 31185988.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    13. Motor module generalization across balance and walking is impaired after stroke. J Neurophysiol. 2019 07 01; 122(1):277-289. Allen JL, Kesar TM, Ting LH. PMID: 31066611.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    14. Cortactin Phosphorylation by Casein Kinase 2 Regulates Actin-Related Protein 2/3 Complex Activity, Invadopodia Function, and Tumor Cell Invasion. Mol Cancer Res. 2019 04; 17(4):987-1001. Markwell SM, Ammer AG, Interval ET, Allen JL, Papenberg BW, Hames RA, Castaño JE, Schafer DA, Weed SA. PMID: 30610108.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    15. Gait Rehabilitation Using Functional Electrical Stimulation Induces Changes in Ankle Muscle Coordination in Stroke Survivors: A Preliminary Study. Front Neurol. 2018; 9:1127. Allen JL, Ting LH, Kesar TM. PMID: 30619077.
      View in: PubMed   Mentions: 4  
    16. First genome-wide analysis of the endangered, endemic lichen Cetradonia linearis reveals isolation by distance and strong population structure. Am J Bot. 2018 09; 105(9):1556-1567. Allen JL, McKenzie SK, Sleith RS, Alter SE. PMID: 30157288.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    17. The motor repertoire of older adult fallers may constrain their response to balance perturbations. J Neurophysiol. 2018 11 01; 120(5):2368-2378. Allen JL, Franz JR. PMID: 30133380.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    18. Nanoporous Immunoprotective Device for Stem-Cell-Derived β-Cell Replacement Therapy. ACS Nano. 2017 08 22; 11(8):7747-7757. Chang R, Faleo G, Russ HA, Parent AV, Elledge SK, Bernards DA, Allen JL, Villanueva K, Hebrok M, Tang Q, Desai TA. PMID: 28763191.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    19. Increased neuromuscular consistency in gait and balance after partnered, dance-based rehabilitation in Parkinson's disease. J Neurophysiol. 2017 07 01; 118(1):363-373. Allen JL, McKay JL, Sawers A, Hackney ME, Ting LH. PMID: 28381488.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    20. Contribution of muscle short-range stiffness to initial changes in joint kinetics and kinematics during perturbations to standing balance: A simulation study. J Biomech. 2017 04 11; 55:71-77. De Groote F, Allen JL, Ting LH. PMID: 28259465.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    21. Interactions between rates of temperature change and acclimation affect latitudinal patterns of warming tolerance. Conserv Physiol. 2016; 4(1):cow053. Allen JL, Chown SL, Janion-Scheepers C, Clusella-Trullas S. PMID: 27933165.
      View in: PubMed   Mentions: 6  
    22. Hip and ankle responses for reactive balance emerge from varying priorities to reduce effort and kinematic excursion: A simulation study. J Biomech. 2016 10 03; 49(14):3230-3237. Versteeg CS, Ting LH, Allen JL. PMID: 27543251.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    23. Nanotopography applications in drug delivery. Expert Opin Drug Deliv. 2015; 12(12):1823-7. Walsh LA, Allen JL, Desai TA. PMID: 26512871.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    24. Long-term training modifies the modular structure and organization of walking balance control. J Neurophysiol. 2015 Dec; 114(6):3359-73. Sawers A, Allen JL, Ting LH. PMID: 26467521.
      View in: PubMed   Mentions: 37     Fields:    Translation:Humans
    25. The Parmotrema acid test: a look at species delineation in the P. perforatum group 40 y later. Mycologia. 2015 Nov-Dec; 107(6):1120-9. Lendemer JC, Allen JL, Noell N. PMID: 26354803.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    26. Feasible muscle activation ranges based on inverse dynamics analyses of human walking. J Biomech. 2015 Sep 18; 48(12):2990-7. Simpson CS, Sohn MH, Allen JL, Ting LH. PMID: 26300401.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    27. Neuromechanical principles underlying movement modularity and their implications for rehabilitation. Neuron. 2015 Apr 08; 86(1):38-54. Ting LH, Chiel HJ, Trumbower RD, Allen JL, McKay JL, Hackney ME, Kesar TM. PMID: 25856485.
      View in: PubMed   Mentions: 100     Fields:    Translation:Humans
    28. Targeting Syk-activated B cells in murine and human chronic graft-versus-host disease. Blood. 2015 Jun 25; 125(26):4085-94. Flynn R, Allen JL, Luznik L, MacDonald KP, Paz K, Alexander KA, Vulic A, Du J, Panoskaltsis-Mortari A, Taylor PA, Poe JC, Serody JS, Murphy WJ, Hill GR, Maillard I, Koreth J, Cutler CS, Soiffer RJ, Antin JH, Ritz J, Chao NJ, Clynes RA, Sarantopoulos S, Blazar BR. PMID: 25852057.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansAnimalsCells
    29. Forward propulsion asymmetry is indicative of changes in plantarflexor coordination during walking in individuals with post-stroke hemiparesis. Clin Biomech (Bristol, Avon). 2014 Aug; 29(7):780-6. Allen JL, Kautz SA, Neptune RR. PMID: 24973825.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    30. Increased BCR responsiveness in B cells from patients with chronic GVHD. Blood. 2014 Mar 27; 123(13):2108-15. Allen JL, Tata PV, Fore MS, Wooten J, Rudra S, Deal AM, Sharf A, Hoffert T, Roehrs PA, Shea TC, Serody JS, Richards KL, Jagasia M, Lee SJ, Rizzieri D, Horwitz ME, Chao NJ, Sarantopoulos S. PMID: 24532806.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    31. The influence of merged muscle excitation modules on post-stroke hemiparetic walking performance. Clin Biomech (Bristol, Avon). 2013 Jul; 28(6):697-704. Allen JL, Kautz SA, Neptune RR. PMID: 23830138.
      View in: PubMed   Mentions: 32     Fields:    Translation:Humans
    32. A review of chest compression interruptions during out-of-hospital cardiac arrest and strategies for the future. J Emerg Med. 2013 Sep; 45(3):458-66. Souchtchenko SS, Benner JP, Allen JL, Brady WJ. PMID: 23602145.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    33. B cells from patients with chronic GVHD are activated and primed for survival via BAFF-mediated pathways. Blood. 2012 Sep 20; 120(12):2529-36. Allen JL, Fore MS, Wooten J, Roehrs PA, Bhuiya NS, Hoffert T, Sharf A, Deal AM, Armistead P, Coghill J, Gabriel DA, Irons R, Essenmacher A, Shea TC, Richards K, Cutler C, Ritz J, Serody J, Baldwin AS, Sarantopoulos S. PMID: 22896003.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansCells
    34. ECM stiffness primes the TGFβ pathway to promote chondrocyte differentiation. Mol Biol Cell. 2012 Sep; 23(18):3731-42. Allen JL, Cooke ME, Alliston T. PMID: 22833566.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    35. Three-dimensional modular control of human walking. J Biomech. 2012 Aug 09; 45(12):2157-63. Allen JL, Neptune RR. PMID: 22727468.
      View in: PubMed   Mentions: 53     Fields:    Translation:Humans
    36. The effects of acclimation and rates of temperature change on critical thermal limits in Tenebrio molitor (Tenebrionidae) and Cyrtobagous salviniae (Curculionidae). J Insect Physiol. 2012 May; 58(5):669-78. Allen JL, Clusella-Trullas S, Chown SL. PMID: 22342317.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    37. Cutting edge: regulation of TLR4-driven B cell proliferation by RP105 is not B cell autonomous. J Immunol. 2012 Mar 01; 188(5):2065-9. Allen JL, Flick LM, Divanovic S, Jackson SW, Bram R, Rawlings DJ, Finkelman FD, Karp CL. PMID: 22291190.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    38. Step length asymmetry is representative of compensatory mechanisms used in post-stroke hemiparetic walking. Gait Posture. 2011 Apr; 33(4):538-43. Allen JL, Kautz SA, Neptune RR. PMID: 21316240.
      View in: PubMed   Mentions: 43     Fields:    Translation:Humans
    39. Nonredundant roles for B cell-derived IL-10 in immune counter-regulation. J Immunol. 2009 Aug 15; 183(4):2312-20. Madan R, Demircik F, Surianarayanan S, Allen JL, Divanovic S, Trompette A, Yogev N, Gu Y, Khodoun M, Hildeman D, Boespflug N, Fogolin MB, Gröbe L, Greweling M, Finkelman FD, Cardin R, Mohrs M, Müller W, Waisman A, Roers A, Karp CL. PMID: 19620304.
      View in: PubMed   Mentions: 158     Fields:    Translation:AnimalsCells
    40. Regulation of TLR4 signaling and the host interface with pathogens and danger: the role of RP105. J Leukoc Biol. 2007 Aug; 82(2):265-71. Divanovic S, Trompette A, Petiniot LK, Allen JL, Flick LM, Belkaid Y, Madan R, Haky JJ, Karp CL. PMID: 17470533.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
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