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John Colby, MD, PhD

Title(s)Clinical Fellow, Radiology
SchoolSchool of Medicine
Address505 Parnassus Avenue
San Francisco CA 94117
Phone--
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    Collapse Biography 
    Collapse Education and Training
    UCLAMD 2014Medicine
    UCLAPhD2012Biomedical Engineering
    UCLAMS2011Biomedical Engineering
    UC San DiegoBS2005Bioengineering

    Collapse Research 
    Collapse Research Activities and Funding
    White matter maturation and executive function advances in fetal alcohol exposure
    NIH/NIAAA F30AA020431May 1, 2011 - Apr 30, 2014
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Multi-Disease Segmentation of Gliomas and White Matter Hyperintensities in the BraTS Data Using a 3D Convolutional Neural Network. Front Comput Neurosci. 2019; 13:84. Rudie JD, Weiss DA, Saluja R, Rauschecker AM, Wang J, Sugrue L, Bakas S, Colby JB. PMID: 31920609.
      View in: PubMed   Mentions:
    2. Diagnosing Distensible Venous Malformations of the Orbit With Diffusion-weighted Magnetic Resonance Imaging. Am J Ophthalmol. 2018 05; 189:146-154. Kalin-Hajdu E, Colby JB, Idowu O, Grumbine FL, Kang JM, Hirabayashi KS, Glastonbury CM, Vagefi MR, Kersten RC. PMID: 29458038.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Radiomics Approach Fails to Outperform Null Classifier on Test Data. AJNR Am J Neuroradiol. 2017 11; 38(11):E92-E93. Colby JB. PMID: 28860219.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. Machine learning classification of mesial temporal sclerosis in epilepsy patients. Epilepsy Res. 2015 Nov; 117:63-9. Rudie JD, Colby JB, Salamon N. PMID: 26421492.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    5. Combined effects of Alzheimer risk variants in the CLU and ApoE genes on ventricular expansion patterns in the elderly. J Neurosci. 2014 May 07; 34(19):6537-45. Roussotte FF, Gutman BA, Madsen SK, Colby JB, Thompson PM. PMID: 24806679.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    6. Apolipoprotein E epsilon 4 allele is associated with ventricular expansion rate and surface morphology in dementia and normal aging. Neurobiol Aging. 2014 Jun; 35(6):1309-17. Roussotte FF, Gutman BA, Madsen SK, Colby JB, Narr KL, Thompson PM. PMID: 24411483.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    7. White matter connectivity and aerobic fitness in male adolescents. Dev Cogn Neurosci. 2014 Jan; 7:65-75. Herting MM, Colby JB, Sowell ER, Nagel BJ. PMID: 24333926.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    8. White matter microstructure abnormalities and executive function in adolescents with prenatal cocaine exposure. Psychiatry Res. 2013 Aug 30; 213(2):161-8. Lebel C, Warner T, Colby J, Soderberg L, Roussotte F, Behnke M, Davis Eyler F, Sowell ER. PMID: 23769420.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    9. Neural Circuit Development and Function in the Brain. Structural Brain Development: Birth Through Adolescence. 2013. Colby JB, O'Hare ED, Bramen JE, Sowell ER.
    10. White matter microstructural alterations in children with prenatal methamphetamine/polydrug exposure. Psychiatry Res. 2012 Nov 30; 204(2-3):140-8. Colby JB, Smith L, O'Connor MJ, Bookheimer SY, Van Horn JD, Sowell ER. PMID: 23149028.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    11. Insights into multimodal imaging classification of ADHD. Front Syst Neurosci. 2012; 6:59. Colby JB, Rudie JD, Brown JA, Douglas PK, Cohen MS, Shehzad Z. PMID: 22912605.
      View in: PubMed   Mentions:
    12. Along-tract statistics allow for enhanced tractography analysis. Neuroimage. 2012 Feb 15; 59(4):3227-42. Colby JB, Soderberg L, Lebel C, Dinov ID, Thompson PM, Sowell ER. PMID: 22094644.
      View in: PubMed   Mentions: 50     Fields:    Translation:Humans
    13. Quantitative in vivo evidence for broad regional gradients in the timing of white matter maturation during adolescence. Neuroimage. 2011 Jan 01; 54(1):25-31. Colby JB, Van Horn JD, Sowell ER. PMID: 20708693.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells