UCSF Coronavirus Response: UCSF is partnering with public agencies to address the rapidly evolving outbreak and protect our communities. The UCSF COVID-19 Resources Website provides guidance and information for our patients, faculty, staff, trainees and learners.

John Colby, MD, PhD

Title(s)Clinical Fellow, Radiology
SchoolSchool of Medicine
vCardDownload vCard

    Collapse Biography 
    Collapse Education and Training
    UCLAMD 2014Medicine
    UCLAPhD2012Biomedical Engineering
    UCLAMS2011Biomedical Engineering
    UC San DiegoBS2005Bioengineering

    Collapse Research 
    Collapse Research Activities and Funding
    White matter maturation and executive function advances in fetal alcohol exposure
    NIH/NIAAA F30AA020431May 1, 2011 - Apr 30, 2014
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
    List All   |   Timeline
    1. Rudie JD, Weiss DA, Saluja R, Rauschecker AM, Wang J, Sugrue L, Bakas S, Colby JB. Multi-Disease Segmentation of Gliomas and White Matter Hyperintensities in the BraTS Data Using a 3D Convolutional Neural Network. Front Comput Neurosci. 2019; 13:84. PMID: 31920609.
      View in: PubMed
    2. Kalin-Hajdu E, Colby JB, Idowu O, Grumbine FL, Kang JM, Hirabayashi KS, Glastonbury CM, Vagefi MR, Kersten RC. Diagnosing Distensible Venous Malformations of the Orbit With Diffusion-weighted Magnetic Resonance Imaging. Am J Ophthalmol. 2018 05; 189:146-154. PMID: 29458038.
      View in: PubMed
    3. Colby JB. Radiomics Approach Fails to Outperform Null Classifier on Test Data. AJNR Am J Neuroradiol. 2017 11; 38(11):E92-E93. PMID: 28860219.
      View in: PubMed
    4. Rudie JD, Colby JB, Salamon N. Machine learning classification of mesial temporal sclerosis in epilepsy patients. Epilepsy Res. 2015 Nov; 117:63-9. PMID: 26421492.
      View in: PubMed
    5. Roussotte FF, Gutman BA, Madsen SK, Colby JB, Thompson PM. Combined effects of Alzheimer risk variants in the CLU and ApoE genes on ventricular expansion patterns in the elderly. J Neurosci. 2014 May 07; 34(19):6537-45. PMID: 24806679.
      View in: PubMed
    6. Roussotte FF, Gutman BA, Madsen SK, Colby JB, Narr KL, Thompson PM. Apolipoprotein E epsilon 4 allele is associated with ventricular expansion rate and surface morphology in dementia and normal aging. Neurobiol Aging. 2014 Jun; 35(6):1309-17. PMID: 24411483.
      View in: PubMed
    7. Herting MM, Colby JB, Sowell ER, Nagel BJ. White matter connectivity and aerobic fitness in male adolescents. Dev Cogn Neurosci. 2014 Jan; 7:65-75. PMID: 24333926.
      View in: PubMed
    8. Lebel C, Warner T, Colby J, Soderberg L, Roussotte F, Behnke M, Davis Eyler F, Sowell ER. White matter microstructure abnormalities and executive function in adolescents with prenatal cocaine exposure. Psychiatry Res. 2013 Aug 30; 213(2):161-8. PMID: 23769420.
      View in: PubMed
    9. Colby JB, O'Hare ED, Bramen JE, Sowell ER.Neural Circuit Development and Function in the Brain. Structural Brain Development: Birth Through Adolescence. 2013.
    10. Colby JB, Smith L, O'Connor MJ, Bookheimer SY, Van Horn JD, Sowell ER. White matter microstructural alterations in children with prenatal methamphetamine/polydrug exposure. Psychiatry Res. 2012 Nov 30; 204(2-3):140-8. PMID: 23149028.
      View in: PubMed
    11. Colby JB, Rudie JD, Brown JA, Douglas PK, Cohen MS, Shehzad Z. Insights into multimodal imaging classification of ADHD. Front Syst Neurosci. 2012; 6:59. PMID: 22912605.
      View in: PubMed
    12. Colby JB, Soderberg L, Lebel C, Dinov ID, Thompson PM, Sowell ER. Along-tract statistics allow for enhanced tractography analysis. Neuroimage. 2012 Feb 15; 59(4):3227-42. PMID: 22094644.
      View in: PubMed
    13. Colby JB, Van Horn JD, Sowell ER. Quantitative in vivo evidence for broad regional gradients in the timing of white matter maturation during adolescence. Neuroimage. 2011 Jan 01; 54(1):25-31. PMID: 20708693.
      View in: PubMed