Dan Kelly, MD

Title(s)Assistant Professor, Medicine
SchoolSchool of Medicine
Address4150 Clement Street, #26D
San Francisco CA 94121
Phone415-476-6224
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    Collapse Biography 
    Collapse Education and Training
    University of California, San FranciscoPhD2022Epidemiology
    University of California, San FranciscoFellowship2018Infectious Diseases
    University of California, San FranciscoPost-doc2018Prevention Science
    Gorgas Memorial Institute DTMH2017Tropical Medicine
    University of California, BerkeleyMPH2016Public Health - Epidemiology
    Baylor College of MedicineResidency2011Internal Medicine
    Albert Einstein College of MedicineMD2008Medicine
    Princeton UniversityAB2003Chemistry
    Collapse Awards and Honors
    UC San Francisco2019Mentor Award
    National Institutes of Health2016Loan Repayment Program Award
    UC Berkeley2016Sidney MacDonald Russell Family Graduate Fellowship Award
    UC Office of President2015Presidents Global Food Initiative Fellowship Award
    The Clinton Foundation2015Clinton Global Citizen Award (recipient: Wellbody Alliance)
    Malvern Preparatory School2015St. Augustine Alumni Award
    Ministry of Health in Sierra Leone2011Fulbright Scholarship
    Yeshiva University2008Point of Light
    Global Health Education Consortium2008Velji Global Health Project of the Year Award
    Albert Einstein College of Medicine2008Albert S. Kuperman Award for Field Work in Global Health

    Collapse Overview 
    Collapse Overview
    After graduating from Princeton University, Dan Kelly, MD, MPH, went to Albert Einstein College of Medicine, where he pursued a Global Health Fellowship after his third year. In Sierra Leone, a local doctor and he were inspired to start Wellbody Alliance, a health and human rights non-profit organization that provides high-quality healthcare to the rural poor. After internal medicine residency and with a Fulbright scholarship, Dan conducted HIV research in Sierra Leone while building the community health work of Wellbody Alliance to care for the half million people living in rural Kono district. Dan was an infectious disease fellow at University of California, San Francisco, and an MPH student at University of California, Berkeley, when Ebola struck Sierra Leone. After a close friend died of Ebola in August 2014, Dan decided to take a leave of absence from fellowship training and the MPH to take a full-time leadership role in the Ebola response. Dan reached out to his long-time mentor Paul Farmer and established a coalition with Partners In Health in Sierra Leone. Dan spent eight months on the ground in Sierra Leone during the Ebola epidemic and led multiple frontiers of work, ranging from Ebola care to clinical trials of innovative Ebola diagnostics, and integrated Wellbody Alliance into Partners In Health. Dan returned to UCSF and UCB and finished his infectious disease fellowship and MPH. Dan continues to conduct Ebola research in Sierra Leone and Liberia. He employs sero-epidemiology, transmission mapping and modeling techniques, and clinical research cohorts to investigate asymptomatic Ebola virus infection and mild illness. Dan has published on Ebola in New England Journal of Medicine, Nature, and The Lancet.
    Collapse Websites
    Collapse Global Health Equity

    Collapse Research 
    Collapse Research Activities and Funding
    VAccine Failure: natural history and determinants of post-vaccination COVID-19
    VA CSRD I01CX002417Jan 1, 2022 - Dec 31, 2026
    Role: Principal Investigator
    RECOVER: Researching COVID to Enhance Recovery at UCSF as Hub-Site
    NIH/OD NIH OTA-21-015BJan 1, 2022 - Dec 31, 2026
    Role: Principal Investigator
    Natural history of acute SARS-CoV-2 infection among exposed individuals
    Centers for Disease Control and Prevention CDC 75D301-20-R-67897Jun 1, 2020 - Nov 30, 2024
    Role: Principal Investigator
    COVID-19 modeling: behavior, asymptomatic infection, and contacts
    NIH/NIGMS R01GM130900-01A1S1May 1, 2020 - Apr 30, 2022
    Role: Co-Investigator
    Ebola modeling: behavior, asymptomatic infection, and contacts
    NIH R01GM130900Sep 1, 2019 - Aug 31, 2023
    Role: Co-Investigator
    Training in Clinical and Epidemiological Research for Liberia (TRACER)
    NIH U2RTW011281Aug 10, 2019 - Apr 30, 2024
    Role: Co-Investigator
    Understanding the epidemiology and natural history of unrecognized Ebola virus infection
    NIH K23AI146268Aug 1, 2019 - Jul 31, 2023
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Plasma-based antigen persistence in the post-acute phase of COVID-19. Lancet Infect Dis. 2024 Apr 08. Peluso MJ, Swank ZN, Goldberg SA, Lu S, Dalhuisen T, Borberg E, Senussi Y, Luna MA, Chang Song C, Clark A, Zamora A, Lew M, Viswanathan B, Huang B, Anglin K, Hoh R, Hsue PY, Durstenfeld MS, Spinelli MA, Glidden DV, Henrich TJ, Kelly JD, Deeks SG, Walt DR, Martin JN. PMID: 38604216.
      View in: PubMed   Mentions:
    2. Comparing frequency of booster vaccination to prevent severe COVID-19 by risk group in the United States. Nat Commun. 2024 Mar 06; 15(1):1883. Park HJ, Gonsalves GS, Tan ST, Kelly JD, Rutherford GW, Wachter RM, Schechter R, Paltiel AD, Lo NC. PMID: 38448400; PMCID: PMC10917753.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    3. Representations of an Ebola 'outbreak' through Story Technologies. BMJ Glob Health. 2024 02 10; 9(2). Frankfurter R, Malik M, Kpakiwa SD, McGinnis T, Malik MM, Chitre S, Barrie MB, Dibba Y, Mulalu L, Baldwinson R, Fallah M, Rashid I, Kelly JD, Richardson ET. PMID: 38341190; PMCID: PMC10862337.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    4. Long COVID manifests with T cell dysregulation, inflammation and an uncoordinated adaptive immune response to SARS-CoV-2. Nat Immunol. 2024 Feb; 25(2):218-225. Yin K, Peluso MJ, Luo X, Thomas R, Shin MG, Neidleman J, Andrew A, Young KC, Ma T, Hoh R, Anglin K, Huang B, Argueta U, Lopez M, Valdivieso D, Asare K, Deveau TM, Munter SE, Ibrahim R, Ständker L, Lu S, Goldberg SA, Lee SA, Lynch KL, Kelly JD, Martin JN, Münch J, Deeks SG, Henrich TJ, Roan NR. PMID: 38212464; PMCID: PMC10834368.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    5. Plasma-based antigen persistence in the post-acute phase of SARS-CoV-2 infection. medRxiv. 2023 Dec 29. Peluso MJ, Swank ZN, Goldberg SA, Lu S, Dalhuisen T, Borberg E, Senussi Y, Luna MA, Song CC, Clark A, Zamora A, Lew M, Viswanathan B, Huang B, Anglin K, Hoh R, Hsue PY, Durstenfeld MS, Spinelli MA, Glidden DV, Henrich TJ, Daniel Kelly J, Deeks SG, Walt DR, Martin JN. PMID: 37961239; PMCID: PMC10635183.
      View in: PubMed   Mentions:
    6. The breadth of the neutralizing antibody response to original SARS-CoV-2 infection is linked to the presence of Long COVID symptoms. J Med Virol. 2023 11; 95(11):e29216. Buck AM, Deitchman AN, Takahashi S, Lu S, Goldberg SA, Bodansky A, Kung A, Hoh R, Williams MC, Kerbleski M, Maison DP, Deveau TM, Munter SE, Lombardo J, Wrin T, Petropoulos CJ, Durstenfeld MS, Hsue PY, Kelly JD, Greenhouse B, Martin JN, Deeks SG, Peluso MJ, Henrich TJ. PMID: 37988251; PMCID: PMC10754238.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    7. SARS-CoV-2 Serology Across Scales: A Framework for Unbiased Estimation of Cumulative Incidence Incorporating Antibody Kinetics and Epidemic Recency. Am J Epidemiol. 2023 09 01; 192(9):1562-1575. Takahashi S, Peluso MJ, Hakim J, Turcios K, Janson O, Routledge I, Busch MP, Hoh R, Tai V, Kelly JD, Martin JN, Deeks SG, Henrich TJ, Greenhouse B, Rodríguez-Barraquer I. PMID: 37119030; PMCID: PMC10472487.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    8. Reduced Exercise Capacity, Chronotropic Incompetence, and Early Systemic Inflammation in Cardiopulmonary Phenotype Long Coronavirus Disease 2019. J Infect Dis. 2023 08 31; 228(5):542-554. Durstenfeld MS, Peluso MJ, Kaveti P, Hill C, Li D, Sander E, Swaminathan S, Arechiga VM, Lu S, Goldberg SA, Hoh R, Chenna A, Yee BC, Winslow JW, Petropoulos CJ, Kelly JD, Glidden DV, Henrich TJ, Martin JN, Lee YJ, Aras MA, Long CS, Grandis DJ, Deeks SG, Hsue PY. PMID: 37166076; PMCID: PMC10686699.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    9. Longitudinal clinical phenotyping of post COVID condition in Mexican adults recovering from severe COVID-19: a prospective cohort study. Front Med (Lausanne). 2023; 10:1236702. Núñez I, Gillard J, Fragoso-Saavedra S, Feyaerts D, Islas-Weinstein L, Gallegos-Guzmán AA, Valente-García U, Meyerowitz J, Kelly JD, Chen H, Ganio E, Benkendorff A, Flores-Gouyonnet J, Dammann-Beltrán P, Heredia-González JF, Rangel-Gutiérrez GA, Blish CA, Nadeau KC, Nolan G, Crispín JC, McIlwain DR, Gaudillière B, Valdés-Ferrer SI. PMID: 37727759; PMCID: PMC10505811.
      View in: PubMed   Mentions: 2  
    10. Long COVID manifests with T cell dysregulation, inflammation, and an uncoordinated adaptive immune response to SARS-CoV-2. bioRxiv. 2023 Aug 04. Yin K, Peluso MJ, Luo X, Thomas R, Shin MG, Neidleman J, Andrew A, Young K, Ma T, Hoh R, Anglin K, Huang B, Argueta U, Lopez M, Valdivieso D, Asare K, Deveau TM, Munter SE, Ibrahim R, Ständker L, Lu S, Goldberg SA, Lee SA, Lynch KL, Kelly JD, Martin JN, Münch J, Deeks SG, Henrich TJ, Roan NR. PMID: 36798286; PMCID: PMC9934605.
      View in: PubMed   Mentions:
    11. Multimodal Molecular Imaging Reveals Tissue-Based T Cell Activation and Viral RNA Persistence for Up to 2 Years Following COVID-19. medRxiv. 2023 Jul 31. Peluso MJ, Ryder D, Flavell R, Wang Y, Levi J, LaFranchi BH, Deveau TM, Buck AM, Munter SE, Asare KA, Aslam M, Koch W, Szabo G, Hoh R, Deswal M, Rodriguez A, Buitrago M, Tai V, Shrestha U, Lu S, Goldberg SA, Dalhuisen T, Durstenfeld MS, Hsue PY, Kelly JD, Kumar N, Martin JN, Gambir A, Somsouk M, Seo Y, Deeks SG, Laszik ZG, VanBrocklin HF, Henrich TJ. PMID: 37577714; PMCID: PMC10418298.
      View in: PubMed   Mentions:
    12. Viral Determinants of Acute COVID-19 Symptoms in a Nonhospitalized Adult Population in the Pre-Omicron Era. Open Forum Infect Dis. 2023 Aug; 10(8):ofad396. Goldberg SA, Lu S, Garcia-Knight M, Davidson MC, Tassetto M, Anglin K, Pineda-Ramirez J, Chen JY, Rugart PR, Mathur S, Forman CA, Donohue KC, Abedi GR, Saydah S, Briggs-Hagen M, Midgley CM, Andino R, Peluso MJ, Glidden DV, Martin JN, Kelly JD. PMID: 37636517; PMCID: PMC10456204.
      View in: PubMed   Mentions:
    13. A common allele of HLA is associated with asymptomatic SARS-CoV-2 infection. Nature. 2023 Aug; 620(7972):128-136. Augusto DG, Murdolo LD, Chatzileontiadou DSM, Sabatino JJ, Yusufali T, Peyser ND, Butcher X, Kizer K, Guthrie K, Murray VW, Pae V, Sarvadhavabhatla S, Beltran F, Gill GS, Lynch KL, Yun C, Maguire CT, Peluso MJ, Hoh R, Henrich TJ, Deeks SG, Davidson M, Lu S, Goldberg SA, Kelly JD, Martin JN, Vierra-Green CA, Spellman SR, Langton DJ, Dewar-Oldis MJ, Smith C, Barnard PJ, Lee S, Marcus GM, Olgin JE, Pletcher MJ, Maiers M, Gras S, Hollenbach JA. PMID: 37468623; PMCID: PMC10396966.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    14. SARS-CoV-2 post-acute sequelae in previously hospitalised patients: systematic literature review and meta-analysis. Eur Respir Rev. 2023 Sep 30; 32(169). Kelly JD, Curteis T, Rawal A, Murton M, Clark LJ, Jafry Z, Shah-Gupta R, Berry M, Espinueva A, Chen L, Abdelghany M, Sweeney DA, Quint JK. PMID: 37437914; PMCID: PMC10336551.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    15. Performance of Blood-Based Nucleocapsid Antigen Tests for Diagnosis of Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Infectious Viral Shedding: A Systematic Review. Open Forum Infect Dis. 2023 Aug; 10(8):ofad346. Mathur S, So M, Tahir P, Peluso MJ, Martin JN, Kelly JD. PMID: 37547852; PMCID: PMC10400123.
      View in: PubMed   Mentions:
    16. Risk of Herpes Zoster Ophthalmicus After COVID-19 Vaccination in a Large US Health Care Claims Database. Am J Ophthalmol. 2024 Feb; 258:139-144. Akpandak I, Sechrist SJ, Claire Miller D, Sun Y, Arnold BF, Daniel Kelly J, Acharya NR. PMID: 37423396; PMCID: PMC10963023.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    17. Researching COVID to Enhance Recovery (RECOVER) adult study protocol: Rationale, objectives, and design. PLoS One. 2023; 18(6):e0286297. Horwitz LI, Thaweethai T, Brosnahan SB, Cicek MS, Fitzgerald ML, Goldman JD, Hess R, Hodder SL, Jacoby VL, Jordan MR, Krishnan JA, Laiyemo AO, Metz TD, Nichols L, Patzer RE, Sekar A, Singer NG, Stiles LE, Taylor BS, Ahmed S, Algren HA, Anglin K, Aponte-Soto L, Ashktorab H, Bassett IV, Bedi B, Bhadelia N, Bime C, Bind MC, Black LJ, Blomkalns AL, Brim H, Castro M, Chan J, Charney AW, Chen BK, Chen LQ, Chen P, Chestek D, Chibnik LB, Chow DC, Chu HY, Clifton RG, Collins S, Costantine MM, Cribbs SK, Deeks SG, Dickinson JD, Donohue SE, Durstenfeld MS, Emery IF, Erlandson KM, Facelli JC, Farah-Abraham R, Finn AV, Fischer MS, Flaherman VJ, Fleurimont J, Fonseca V, Gallagher EJ, Gander JC, Gennaro ML, Gibson KS, Go M, Goodman SN, Granger JP, Greenway FL, Hafner JW, Han JE, Harkins MS, Hauser KSP, Heath JR, Hernandez CR, Ho O, Hoffman MK, Hoover SE, Horowitz CR, Hsu H, Hsue PY, Hughes BL, Jagannathan P, James JA, John J, Jolley S, Judd SE, Juskowich JJ, Kanjilal DG, Karlson EW, Katz SD, Kelly JD, Kelly SW, Kim AY, Kirwan JP, Knox KS, Kumar A, Lamendola-Essel MF, Lanca M, Lee-Lannotti JK, Lefebvre RC, Levy BD, Lin JY, Logarbo BP, Logue JK, Longo MT, Luciano CA, Lutrick K, Malakooti SK, Mallett G, Maranga G, Marathe JG, Marconi VC, Marshall GD, Martin CF, Martin JN, May HT, McComsey GA, McDonald D, Mendez-Figueroa H, Miele L, Mittleman MA, Mohandas S, Mouchati C, Mullington JM, Nadkarni GN, Nahin ER, Neuman RB, Newman LT, Nguyen A, Nikolich JZ, Ofotokun I, Ogbogu PU, Palatnik A, Palomares KTS, Parimon T, Parry S, Parthasarathy S, Patterson TF, Pearman A, Peluso MJ, Pemu P, Pettker CM, Plunkett BA, Pogreba-Brown K, Poppas A, Porterfield JZ, Quigley JG, Quinn DK, Raissy H, Rebello CJ, Reddy UM, Reece R, Reeder HT, Rischard FP, Rosas JM, Rosen CJ, Rouphael NG, Rouse DJ, Ruff AM, Saint Jean C, Sandoval GJ, Santana JL, Schlater SM, Sciurba FC, Selvaggi C, Seshadri S, Sesso HD, Shah DP, Shemesh E, Sherif ZA, Shinnick DJ, Simhan HN, Singh U, Sowles A, Subbian V, Sun J, Suthar MS, Teunis LJ, Thorp JM, Ticotsky A, Tita ATN, Tragus R, Tuttle KR, Urdaneta AE, Utz PJ, VanWagoner TM, Vasey A, Vernon SD, Vidal C, Walker T, Ward HD, Warren DE, Weeks RM, Weiner SJ, Weyer JC, Wheeler JL, Whiteheart SW, Wiley Z, Williams NJ, Wisnivesky JP, Wood JC, Yee LM, Young NM, Zisis SN, Foulkes AS. PMID: 37352211; PMCID: PMC10289397.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsCTClinical Trials
    18. Longitudinal and quantitative fecal shedding dynamics of SARS-CoV-2, pepper mild mottle virus, and crAssphage. mSphere. 2023 08 24; 8(4):e0013223. Arts PJ, Kelly JD, Midgley CM, Anglin K, Lu S, Abedi GR, Andino R, Bakker KM, Banman B, Boehm AB, Briggs-Hagen M, Brouwer AF, Davidson MC, Eisenberg MC, Garcia-Knight M, Knight S, Peluso MJ, Pineda-Ramirez J, Diaz Sanchez R, Saydah S, Tassetto M, Martin JN, Wigginton KR. PMID: 37338211; PMCID: PMC10506459.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    19. Association of Culturable-Virus Detection and Household Transmission of SARS-CoV-2, California and Tennessee, 2020-2022. J Infect Dis. 2023 06 15; 227(12):1343-1347. Deyoe JE, Kelly JD, Grijalva CG, Bonenfant G, Lu S, Anglin K, Garcia-Knight M, Pineda-Ramirez J, Hagen MB, Saydah S, Abedi GR, Goldberg SA, Tassetto M, Zhang A, Donohue KC, Davidson MC, Sanchez RD, Djomaleu M, Mathur S, Shak JR, Deeks SG, Peluso MJ, Chiu CY, Zhu Y, Halasa NB, Chappell JD, Mellis A, Reed C, Andino R, Martin JN, Zhou B, Talbot HK, Midgley CM, Rolfes MA. PMID: 36705269; PMCID: PMC10266938.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    20. Development of a Definition of Postacute Sequelae of SARS-CoV-2 Infection. JAMA. 2023 06 13; 329(22):1934-1946. Thaweethai T, Jolley SE, Karlson EW, Levitan EB, Levy B, McComsey GA, McCorkell L, Nadkarni GN, Parthasarathy S, Singh U, Walker TA, Selvaggi CA, Shinnick DJ, Schulte CCM, Atchley-Challenner R, Alba GA, Alicic R, Altman N, Anglin K, Argueta U, Ashktorab H, Baslet G, Bassett IV, Bateman L, Bedi B, Bhattacharyya S, Bind MA, Blomkalns AL, Bonilla H, Bush PA, Castro M, Chan J, Charney AW, Chen P, Chibnik LB, Chu HY, Clifton RG, Costantine MM, Cribbs SK, Davila Nieves SI, Deeks SG, Duven A, Emery IF, Erdmann N, Erlandson KM, Ernst KC, Farah-Abraham R, Farner CE, Feuerriegel EM, Fleurimont J, Fonseca V, Franko N, Gainer V, Gander JC, Gardner EM, Geng LN, Gibson KS, Go M, Goldman JD, Grebe H, Greenway FL, Habli M, Hafner J, Han JE, Hanson KA, Heath J, Hernandez C, Hess R, Hodder SL, Hoffman MK, Hoover SE, Huang B, Hughes BL, Jagannathan P, John J, Jordan MR, Katz SD, Kaufman ES, Kelly JD, Kelly SW, Kemp MM, Kirwan JP, Klein JD, Knox KS, Krishnan JA, Kumar A, Laiyemo AO, Lambert AA, Lanca M, Lee-Iannotti JK, Logarbo BP, Longo MT, Luciano CA, Lutrick K, Maley JH, Marathe JG, Marconi V, Marshall GD, Martin CF, Matusov Y, Mehari A, Mendez-Figueroa H, Mermelstein R, Metz TD, Morse R, Mosier J, Mouchati C, Mullington J, Murphy SN, Neuman RB, Nikolich JZ, Ofotokun I, Ojemakinde E, Palatnik A, Palomares K, Parimon T, Parry S, Patterson JE, Patterson TF, Patzer RE, Peluso MJ, Pemu P, Pettker CM, Plunkett BA, Pogreba-Brown K, Poppas A, Quigley JG, Reddy U, Reece R, Reeder H, Reeves WB, Reiman EM, Rischard F, Rosand J, Rouse DJ, Ruff A, Saade G, Sandoval GJ, Schlater SM, Shepherd F, Sherif ZA, Simhan H, Singer NG, Skupski DW, Sowles A, Sparks JA, Sukhera FI, Taylor BS, Teunis L, Thomas RJ, Thorp JM, Thuluvath P, Ticotsky A, Tita AT, Tuttle KR, Urdaneta AE, Valdivieso D, VanWagoner TM, Vasey A, Verduzco-Gutierrez M, Wallace ZS, Ward HD, Warren DE, Weiner SJ, Welch S, Whiteheart SW, Wiley Z, Wisnivesky JP, Yee LM, Zisis S, Horwitz LI, Foulkes AS, RECOVER Consortium. PMID: 37278994; PMCID: PMC10214179.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansCells
    21. Autoantigen profiling reveals a shared post-COVID signature in fully recovered and long COVID patients. JCI Insight. 2023 06 08; 8(11). Bodansky A, Wang CY, Saxena A, Mitchell A, Kung AF, Takahashi S, Anglin K, Huang B, Hoh R, Lu S, Goldberg SA, Romero J, Tran B, Kirtikar R, Grebe H, So M, Greenhouse B, Durstenfeld MS, Hsue PY, Hellmuth J, Kelly JD, Martin JN, Anderson MS, Deeks SG, Henrich TJ, DeRisi JL, Peluso MJ. PMID: 37288661; PMCID: PMC10393220.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    22. Comparative mRNA booster effectiveness against death or hospitalization with COVID-19 pneumonia across at-risk US Veteran populations. Nat Commun. 2023 05 23; 14(1):2976. Kelly JD, Leonard S, Boscardin WJ, Hoggatt KJ, Lum EN, Austin CC, Byers A, Tien PC, Austin PC, Bravata DM, Keyhani S. PMID: 37221198; PMCID: PMC10205032.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    23. MultiSero: An Open-Source Multiplex-ELISA Platform for Measuring Antibody Responses to Infection. Pathogens. 2023 May 02; 12(5). Byrum JR, Waltari E, Janson O, Guo SM, Folkesson J, Chhun BB, Vinden J, Ivanov IE, Forst ML, Li H, Larson AG, Blackmon L, Liu Z, Wu W, Ahyong V, Tato CM, McCutcheon KM, Hoh R, Kelly JD, Martin JN, Peluso MJ, Henrich TJ, Deeks SG, Prakash M, Greenhouse B, Mehta SB, Pak JE. PMID: 37242341; PMCID: PMC10221076.
      View in: PubMed   Mentions: 4  
    24. Identifying Paucisymptomatic or Asymptomatic and Unrecognized Ebola Virus Disease Among Close Contacts Based on Exposure Risk Assessments and Screening Algorithms. J Infect Dis. 2023 04 12; 227(7):878-887. Gayedyu-Dennis D, Fallah MP, Drew C, Badio M, Moses JS, Fayiah T, Johnson K, Richardson ET, Weiser SD, Porco TC, Martin JN, Sneller MC, Rutherford GW, Reilly C, Lindan CP, Kelly JD. PMID: 36047331; PMCID: PMC10319948.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    25. The Breadth of the Neutralizing Antibody Response to Original SARS-CoV-2 Infection is Linked to the Presence of Long COVID Symptoms. medRxiv. 2023 Mar 31. Buck AM, Deitchman AN, Takahashi S, Lu S, Goldberg SA, Hoh R, Williams MC, Kerbleski M, Deveau TM, Munter SE, Lombardo J, Wrin T, Petropoulos CJ, Durstenfeld MS, Hsue PY, Kelly JD, Greenhouse B, Martin JN, Deeks SG, Peluso MJ, Henrich TJ. PMID: 37034660; PMCID: PMC10081395.
      View in: PubMed   Mentions:
    26. Autoantigen profiling reveals a shared post-COVID signature in fully recovered and Long COVID patients. medRxiv. 2023 Feb 09. Bodansky A, Wang CY, Saxena A, Mitchell A, Takahashi S, Anglin K, Huang B, Hoh R, Lu S, Goldberg SA, Romero J, Tran B, Kirtikar R, Grebe H, So M, Greenhouse B, Durstenfeld MS, Hsue PY, Hellmuth J, Kelly JD, Martin JN, Anderson MS, Deeks SG, Henrich TJ, DeRisi JL, Peluso MJ. PMID: 36798288; PMCID: PMC9934805.
      View in: PubMed   Mentions:
    27. Chronic viral coinfections differentially affect the likelihood of developing long COVID. J Clin Invest. 2023 02 01; 133(3). Peluso MJ, Deveau TM, Munter SE, Ryder D, Buck A, Beck-Engeser G, Chan F, Lu S, Goldberg SA, Hoh R, Tai V, Torres L, Iyer NS, Deswal M, Ngo LH, Buitrago M, Rodriguez A, Chen JY, Yee BC, Chenna A, Winslow JW, Petropoulos CJ, Deitchman AN, Hellmuth J, Spinelli MA, Durstenfeld MS, Hsue PY, Kelly JD, Martin JN, Deeks SG, Hunt PW, Henrich TJ. PMID: 36454631; PMCID: PMC9888380.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansCells
    28. Low Prevalence of Interferon α Autoantibodies in People Experiencing Symptoms of Post-Coronavirus Disease 2019 (COVID-19) Conditions, or Long COVID. J Infect Dis. 2023 01 11; 227(2):246-250. Peluso MJ, Mitchell A, Wang CY, Takahashi S, Hoh R, Tai V, Durstenfeld MS, Hsue PY, Kelly JD, Martin JN, Wilson MR, Greenhouse B, Deeks SG, DeRisi JL, Henrich TJ. PMID: 36089700; PMCID: PMC9494362.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    29. Neutralizing Immunity Induced Against the Omicron BA.1 and BA.2 Variants in Vaccine Breakthrough Infections. J Infect Dis. 2022 11 11; 226(10):1688-1698. Brazer N, Morris MK, Servellita V, Anglin K, Saldhi P, Garcia-Knight M, Bethancourt S, Sotomayor-Gonzalez A, Wang B, Foresythe A, Nguyen J, Gliwa AS, Pineda-Ramirez J, Sanchez RD, Zhang Y, Ott M, Wadford DA, Andino R, Kelly JD, Hanson C, Chiu CY. PMID: 36134603; PMCID: PMC9619439.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    30. Social Network Analysis of Ebola Virus Disease During the 2014 Outbreak in Sukudu, Sierra Leone. Open Forum Infect Dis. 2022 Nov; 9(11):ofac593. Hazel A, Davidson MC, Rogers A, Barrie MB, Freeman A, Mbayoh M, Kamara M, Blumberg S, Lietman TM, Rutherford GW, Jones JH, Porco TC, Richardson ET, Kelly JD. PMID: 36467298; PMCID: PMC9709704.
      View in: PubMed   Mentions:
    31. Assessment of Herpes Zoster Risk Among Recipients of COVID-19 Vaccine. JAMA Netw Open. 2022 11 01; 5(11):e2242240. Akpandak I, Miller DC, Sun Y, Arnold BF, Kelly JD, Acharya NR. PMID: 36383382; PMCID: PMC9669817.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    32. Long-term consequences of food insecurity among Ebola virus disease-affected households after the 2013-2016 epidemic in rural communities of Kono District, Sierra Leone: A qualitative study. PLOS Glob Public Health. 2022; 2(10). Djomaleu ML, Rogers AB, Barrie MB, Rutherford GW, Weiser SD, Kelly JD. PMID: 36382340; PMCID: PMC9648537.
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    33. Evaluation of Severe Acute Respiratory Syndrome Coronavirus 2 Nucleocapsid Antigen in the Blood as a Diagnostic Test for Infection and Infectious Viral Shedding. Open Forum Infect Dis. 2022 Nov; 9(11):ofac563. Mathur S, Davidson MC, Anglin K, Lu S, Goldberg SA, Garcia-Knight M, Tassetto M, Zhang A, Romero M, Pineda-Ramirez J, Diaz-Sanchez R, Rugart P, Chen JY, Donohue K, Shak JR, Chenna A, Winslow JW, Petropoulos CJ, Yee BC, Lambert J, Glidden DV, Rutherford GW, Deeks SG, Peluso MJ, Andino R, Martin JN, Kelly JD. PMID: 36381627; PMCID: PMC9620332.
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    34. Incidence of Severe COVID-19 Illness Following Vaccination and Booster With BNT162b2, mRNA-1273, and Ad26.COV2.S Vaccines. JAMA. 2022 10 11; 328(14):1427-1437. Kelly JD, Leonard S, Hoggatt KJ, Boscardin WJ, Lum EN, Moss-Vazquez TA, Andino R, Wong JK, Byers A, Bravata DM, Tien PC, Keyhani S. PMID: 36156706; PMCID: PMC9513709.
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    35. Magnitude and Determinants of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Household Transmission: A Longitudinal Cohort Study. Clin Infect Dis. 2022 10 03; 75(Suppl 2):S193-S204. Kelly JD, Lu S, Anglin K, Garcia-Knight M, Pineda-Ramirez J, Goldberg SA, Tassetto M, Zhang A, Donohue K, Davidson MC, Romero M, Diaz Sanchez R, Djomaleu M, Mathur S, Chen JY, Forman CA, Servellita V, Montejano RD, Shak JR, Rutherford GW, Deeks SG, Abedi GR, Rolfes MA, Saydah S, Briggs-Hagen M, Peluso MJ, Chiu C, Midgley CM, Andino R, Martin JN. PMID: 35788827; PMCID: PMC9278251.
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    36. Markers of fungal translocation are elevated during post-acute sequelae of SARS-CoV-2 and induce NF-κB signaling. JCI Insight. 2022 09 22; 7(18). Giron LB, Peluso MJ, Ding J, Kenny G, Zilberstein NF, Koshy J, Hong KY, Rasmussen H, Miller GE, Bishehsari F, Balk RA, Moy JN, Hoh R, Lu S, Goldman AR, Tang HY, Yee BC, Chenna A, Winslow JW, Petropoulos CJ, Kelly JD, Wasse H, Martin JN, Liu Q, Keshavarzian A, Landay A, Deeks SG, Henrich TJ, Abdel-Mohsen M. PMID: 36134654; PMCID: PMC9675436.
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    37. Infectious viral shedding of SARS-CoV-2 Delta following vaccination: A longitudinal cohort study. PLoS Pathog. 2022 09; 18(9):e1010802. Garcia-Knight M, Anglin K, Tassetto M, Lu S, Zhang A, Goldberg SA, Catching A, Davidson MC, Shak JR, Romero M, Pineda-Ramirez J, Diaz-Sanchez R, Rugart P, Donohue K, Massachi J, Sans HM, Djomaleu M, Mathur S, Servellita V, McIlwain D, Gaudiliere B, Chen J, Martinez EO, Tavs JM, Bronstone G, Weiss J, Watson JT, Briggs-Hagen M, Abedi GR, Rutherford GW, Deeks SG, Chiu C, Saydah S, Peluso MJ, Midgley CM, Martin JN, Andino R, Kelly JD. PMID: 36095030; PMCID: PMC9499220.
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    38. Detection of Higher Cycle Threshold Values in Culturable SARS-CoV-2 Omicron BA.1 Sublineage Compared with Pre-Omicron Variant Specimens - San Francisco Bay Area, California, July 2021-March 2022. MMWR Morb Mortal Wkly Rep. 2022 Sep 09; 71(36):1151-1154. Tassetto M, Garcia-Knight M, Anglin K, Lu S, Zhang A, Romero M, Pineda-Ramirez J, Sanchez RD, Donohue KC, Pfister K, Chan C, Saydah S, Briggs-Hagen M, Peluso MJ, Martin JN, Andino R, Midgley CM, Kelly JD. PMID: 36074732; PMCID: PMC9470222.
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    39. Postacute sequelae and adaptive immune responses in people with HIV recovering from SARS-COV-2 infection. AIDS. 2022 10 01; 36(12):F7-F16. Peluso MJ, Spinelli MA, Deveau TM, Forman CA, Munter SE, Mathur S, Tang AF, Lu S, Goldberg SA, Arreguin MI, Hoh R, Tai V, Chen JY, Martinez EO, Yee BC, Chenna A, Winslow JW, Petropoulos CJ, Sette A, Weiskopf D, Kumar N, Lynch KL, Hunt PW, Durstenfeld MS, Hsue PY, Kelly JD, Martin JN, Glidden DV, Gandhi M, Deeks SG, Rutishauser RL, Henrich TJ. PMID: 35866847; PMCID: PMC9444925.
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    40. Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19. Cell Rep Med. 2022 07 19; 3(7):100680. Feyaerts D, Hédou J, Gillard J, Chen H, Tsai ES, Peterson LS, Ando K, Manohar M, Do E, Dhondalay GKR, Fitzpatrick J, Artandi M, Chang I, Snow TT, Chinthrajah RS, Warren CM, Wittman R, Meyerowitz JG, Ganio EA, Stelzer IA, Han X, Verdonk F, Gaudillière DK, Mukherjee N, Tsai AS, Rumer KK, Jacobsen DR, Bjornson-Hooper ZB, Jiang S, Saavedra SF, Valdés Ferrer SI, Kelly JD, Furman D, Aghaeepour N, Angst MS, Boyd SD, Pinsky BA, Nolan GP, Nadeau KC, Gaudillière B, McIlwain DR. PMID: 35839768; PMCID: PMC9238057.
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    41. Effect of Oral Nirmatrelvir on Long COVID Symptoms: 4 Cases and Rationale for Systematic Studies. Pathog Immun. 2022; 7(1):95-103. Peluso MJ, Anglin K, Durstenfeld MS, Martin JN, Kelly JD, Hsue PY, Henrich TJ, Deeks SG. PMID: 35800257; PMCID: PMC9254867.
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    42. Plasma Markers of Neurologic Injury and Inflammation in People With Self-Reported Neurologic Postacute Sequelae of SARS-CoV-2 Infection. Neurol Neuroimmunol Neuroinflamm. 2022 09; 9(5). Peluso MJ, Sans HM, Forman CA, Nylander AN, Ho HE, Lu S, Goldberg SA, Hoh R, Tai V, Munter SE, Chenna A, Yee BC, Winslow JW, Petropoulos CJ, Martin JN, Kelly JD, Durstenfeld MS, Hsue PY, Hunt PW, Greene M, Chow FC, Hellmuth J, Henrich TJ, Glidden DV, Deeks SG. PMID: 35701186; PMCID: PMC9210548.
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    43. Role of antibodies, inflammatory markers, and echocardiographic findings in postacute cardiopulmonary symptoms after SARS-CoV-2 infection. JCI Insight. 2022 05 23; 7(10). Durstenfeld MS, Peluso MJ, Kelly JD, Win S, Swaminathan S, Li D, Arechiga VM, Zepeda V, Sun K, Shao S, Hill C, Arreguin MI, Lu S, Hoh R, Tai V, Chenna A, Yee BC, Winslow JW, Petropoulos CJ, Kornak J, Henrich TJ, Martin JN, Deeks SG, Hsue PY. PMID: 35389890; PMCID: PMC9220849.
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    44. Correction: Zoonotic risk factors associated with seroprevalence of Ebola virus GP antibodies in the absence of diagnosed Ebola virus disease in the Democratic Republic of Congo. PLoS Negl Trop Dis. 2022 May; 16(5):e0010465. Bratcher A, Hoff NA, Doshi RH, Gadoth A, Halbrook M, Mukadi P, Musene K, Ilunga-Kebela B, Spencer D, Bramble MS, McIlwain D, Kelly JD, Mukadi D, Kingebeni PM, Ahuka S, Okitolonda-Wemakoy E, -Jacques Muyembe-Tamfum J, Rimoin AW. PMID: 35584086; PMCID: PMC9116649.
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    45. Clinical sequelae among individuals with pauci-symptomatic or asymptomatic Ebola virus infection and unrecognised Ebola virus disease in Liberia: a longitudinal cohort study. Lancet Infect Dis. 2022 08; 22(8):1163-1171. Kelly JD, Van Ryn C, Badio M, Fayiah T, Johnson K, Gayedyu-Dennis D, Weiser SD, Porco TC, Martin JN, Sneller MC, Rutherford GW, Reilly C, Fallah MP, Moses JS. PMID: 35588755; PMCID: PMC9329265.
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    46. SARS-CoV-2 and Mitochondrial Proteins in Neural-Derived Exosomes of COVID-19. Ann Neurol. 2022 06; 91(6):772-781. Peluso MJ, Deeks SG, Mustapic M, Kapogiannis D, Henrich TJ, Lu S, Goldberg SA, Hoh R, Chen JY, Martinez EO, Kelly JD, Martin JN, Goetzl EJ. PMID: 35285072; PMCID: PMC9082480.
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    47. Association of Lower Exposure Risk With Paucisymptomatic/Asymptomatic Infection, Less Severe Disease, and Unrecognized Ebola Virus Disease: A Seroepidemiological Study. Open Forum Infect Dis. 2022 Apr; 9(4):ofac052. Kelly JD, Frankfurter RG, Tavs JM, Barrie MB, McGinnis T, Kamara M, Freeman A, Quiwah K, Davidson MC, Dighero-Kemp B, Gichini H, Elliott E, Reilly C, Hensley LE, Lane HC, Weiser SD, Porco TC, Rutherford GW, Richardson ET. PMID: 35265726; PMCID: PMC8900924.
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    48. Immunogenicity of rVSVΔG-ZEBOV-GP Ebola vaccination in exposed and potentially exposed persons in the Democratic Republic of the Congo. Proc Natl Acad Sci U S A. 2022 02 08; 119(6). Hoff NA, Bratcher A, Kelly JD, Musene K, Kompany JP, Kabamba M, Mbala-Kingebeni P, Dighero-Kemp B, Kocher G, Elliott E, Reilly C, Halbrook M, Ilunga Kebela B, Gadoth A, Ngoie Mwamba G, Tambu M, McIlwain DR, Mukadi P, Hensley LE, Ahuka-Mundeke S, Rutherford GW, Muyembe-Tamfum JJ, Rimoin AW. PMID: 35110410; PMCID: PMC8833182.
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    49. A post-outbreak assessment of exposure proximity and Ebola virus disease-related stigma among community members in Kono District, Sierra Leone: A cross-sectional study. SSM Ment Health. 2022 Dec; 2. Davidson MC, Lu S, Barrie MB, Freeman A, Mbayoh M, Kamara M, Tsai AC, Crea T, Rutherford GW, Weiser SD, Kelly JD. PMID: 35449727; PMCID: PMC9017820.
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    50. Risk factors and abnormal cerebrospinal fluid associate with cognitive symptoms after mild COVID-19. Ann Clin Transl Neurol. 2022 02; 9(2):221-226. Apple AC, Oddi A, Peluso MJ, Asken BM, Henrich TJ, Kelly JD, Pleasure SJ, Deeks SG, Allen IE, Martin JN, Ndhlovu LC, Miller BL, Stephens ML, Hellmuth J. PMID: 35043593; PMCID: PMC8862406.
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    51. Comparing Azithromycin to Amoxicillin in the Management of Uncomplicated Severe Acute Malnutrition in Burkina Faso: A Pilot Randomized Trial. Am J Trop Med Hyg. 2022 01 10; 106(3):930-938. O'Brien KS, Sié A, Dah C, Ourohiré M, Ouedraogo M, Boudo V, Arzika A, Lebas E, Nyatigo F, Godwin W, Kelly JD, Arnold BF, Oldenburg CE. PMID: 35008055; PMCID: PMC8922483.
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    52. Persistence, Magnitude, and Patterns of Postacute Symptoms and Quality of Life Following Onset of SARS-CoV-2 Infection: Cohort Description and Approaches for Measurement. Open Forum Infect Dis. 2022 Feb; 9(2):ofab640. Peluso MJ, Kelly JD, Lu S, Goldberg SA, Davidson MC, Mathur S, Durstenfeld MS, Spinelli MA, Hoh R, Tai V, Fehrman EA, Torres L, Hernandez Y, Williams MC, Arreguin MI, Ngo LH, Deswal M, Munter SE, Martinez EO, Anglin KA, Romero MD, Tavs J, Rugart PR, Chen JY, Sans HM, Murray VW, Ellis PK, Donohue KC, Massachi JA, Weiss JO, Mehdi I, Pineda-Ramirez J, Tang AF, Wenger MA, Assenzio MT, Yuan Y, Krone MR, Rutishauser RL, Rodriguez-Barraquer I, Greenhouse B, Sauceda JA, Gandhi M, Scheffler AW, Hsue PY, Henrich TJ, Deeks SG, Martin JN. PMID: 35106317; PMCID: PMC8755302.
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    53. Characterizing the COVID-19 Illness Experience to Inform the Study of Post-acute Sequelae and Recovery. Int J Behav Med. 2022 Oct; 29(5):610-623. Santiago-Rodriguez EI, Maiorana A, Peluso MJ, Hoh R, Tai V, Fehrman EA, Hernandez Y, Torres L, Spinelli MA, Gandhi M, Kelly JD, Martin JN, Henrich TJ, Deeks SG, Sauceda JA. PMID: 34918211; PMCID: PMC8675303.
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    54. Markers of Immune Activation and Inflammation in Individuals With Postacute Sequelae of Severe Acute Respiratory Syndrome Coronavirus 2 Infection. J Infect Dis. 2021 12 01; 224(11):1839-1848. Peluso MJ, Lu S, Tang AF, Durstenfeld MS, Ho HE, Goldberg SA, Forman CA, Munter SE, Hoh R, Tai V, Chenna A, Yee BC, Winslow JW, Petropoulos CJ, Greenhouse B, Hunt PW, Hsue PY, Martin JN, Daniel Kelly J, Glidden DV, Deeks SG, Henrich TJ. PMID: 34677601; PMCID: PMC8643408.
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    55. Increasing Ebola transmission behaviors 6 months post-vaccination: Comparing vaccinated and unvaccinated populations near 2018 Mbandaka Ebola outbreak in the Democratic Republic of Congo. Vaccine. 2021 12 17; 39(51):7464-7469. Hoff NA, Bratcher A, Mukadi P, Ahuka S, Kabamba M, Musene K, Halbrook M, Dzogong C, Mwamba GN, Mbala P, Kelly JD, Kompany JP, Tambu M, Kaba D, Kebela-Ilunga B, Muyemebe-Tamfum JJ, Rimoin AW. PMID: 34799143; PMCID: PMC8687134.
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    56. SARS-CoV-2 antibody prevalence in Sierra Leone, March 2021: a cross-sectional, nationally representative, age-stratified serosurvey. BMJ Glob Health. 2021 11; 6(11). Barrie MB, Lakoh S, Kelly JD, Kanu JS, Squire JS, Koroma Z, Bah S, Sankoh O, Brima A, Ansumana R, Goldberg SA, Chitre S, Osuagwu C, Frankfurter R, Maeda J, Barekye B, Numbere TW, Abdulaziz M, Mounts A, Blanton C, Singh T, Samai M, Vandi M, Richardson ET. PMID: 34764148; PMCID: PMC8587532.
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    57. Triangulating Evidence to Infer Pathways that Influence Ebola Virus Disease-Related Stigma and Clinical Findings among Survivors: An Observational Cohort Study. Am J Trop Med Hyg. 2021 09 27; 105(6):1563-1568. Kelly JD, Badio M, Drew C, Wilson B, Cooper JB, Glayweon M, Johnson K, Moses JS, Gayedu-Dennis D, Torres JM, Oldenburg CE, Davidson MC, Huang CY, Steward WT, Sneller MC, Rutherford GW, Reilly C, Fallah MP, Weiser SD. PMID: 34583332; PMCID: PMC8641323.
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    58. SARS-CoV-2 serology across scales: a framework for unbiased seroprevalence estimation incorporating antibody kinetics and epidemic recency. medRxiv. 2021 Sep 14. Takahashi S, Peluso MJ, Hakim J, Turcios K, Janson O, Routledge I, Busch MP, Hoh R, Tai V, Kelly JD, Martin JN, Deeks SG, Henrich TJ, Greenhouse B, Rodríguez-Barraquer I. PMID: 34545373; PMCID: PMC8452112.
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    59. Zoonotic risk factors associated with seroprevalence of Ebola virus GP antibodies in the absence of diagnosed Ebola virus disease in the Democratic Republic of Congo. PLoS Negl Trop Dis. 2021 08; 15(8):e0009566. Bratcher A, Hoff NA, Doshi RH, Gadoth A, Halbrook M, Mukadi P, Musene K, Ilunga-Kebela B, Spencer D, Bramble MS, McIlwan D, Kelly JD, Mukadi D, Kingebeni PM, Ahuka S, Okitolonda-Wemakoy E, Muyembe-Tamfum JJ, Rimoin AW. PMID: 34383755; PMCID: PMC8384205.
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    60. Severe Acute Respiratory Syndrome Coronavirus 2 Reinfection Cases Corroborated by Sequencing. Am J Trop Med Hyg. 2021 08 09; 105(4):884-889. Massachi J, Donohue KC, Kelly JD. PMID: 34370705; PMCID: PMC8592142.
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    61. Long-term SARS-CoV-2-specific immune and inflammatory responses in individuals recovering from COVID-19 with and without post-acute symptoms. Cell Rep. 2021 08 10; 36(6):109518. Peluso MJ, Deitchman AN, Torres L, Iyer NS, Munter SE, Nixon CC, Donatelli J, Thanh C, Takahashi S, Hakim J, Turcios K, Janson O, Hoh R, Tai V, Hernandez Y, Fehrman EA, Spinelli MA, Gandhi M, Trinh L, Wrin T, Petropoulos CJ, Aweeka FT, Rodriguez-Barraquer I, Kelly JD, Martin JN, Deeks SG, Greenhouse B, Rutishauser RL, Henrich TJ. PMID: 34358460; PMCID: PMC8342976.
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    62. SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay. Sci Adv. 2021 Jul; 7(31). Peluso MJ, Takahashi S, Hakim J, Kelly JD, Torres L, Iyer NS, Turcios K, Janson O, Munter SE, Thanh C, Donatelli J, Nixon CC, Hoh R, Tai V, Fehrman EA, Hernandez Y, Spinelli MA, Gandhi M, Palafox MA, Vallari A, Rodgers MA, Prostko J, Hackett J, Trinh L, Wrin T, Petropoulos CJ, Chiu CY, Norris PJ, DiGermanio C, Stone M, Busch MP, Elledge SK, Zhou XX, Wells JA, Shu A, Kurtz TW, Pak JE, Wu W, Burbelo PD, Cohen JI, Rutishauser RL, Martin JN, Deeks SG, Henrich TJ, Rodriguez-Barraquer I, Greenhouse B. PMID: 34330709; PMCID: PMC8324059.
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    63. Equitable and Feasible Distribution of SARS-CoV-2 Vaccines for All in Africa. Am J Trop Med Hyg. 2021 Jun 28; 105(2):278-280. Rogers AB, Barrie MB, Fallah MP, Kelly JD. PMID: 34181573; PMCID: PMC8437166.
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    64. Association of Social and Behavioral Risk Factors With Mortality Among US Veterans With COVID-19. JAMA Netw Open. 2021 06 01; 4(6):e2113031. Kelly JD, Bravata DM, Bent S, Wray CM, Leonard SJ, Boscardin WJ, Myers LJ, Keyhani S. PMID: 34106264; PMCID: PMC8190626.
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    65. A telehealth-based randomized controlled trial: A model for outpatient trials of off-label medications during the COVID-19 pandemic. Clin Trials. 2021 08; 18(4):514-517. Keyhani S, Kelly JD, Bent S, Boscardin WJ, Shlipak MG, Leonard S, Abraham A, Lum E, Lau N, Austin C, Oldenburg CE, Zillich A, Lopez L, Zhang Y, Lietman T, Bravata DM. PMID: 34011199; PMCID: PMC8292190.
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    66. Empiric use of anticoagulation in hospitalized patients with COVID-19: a propensity score-matched study of risks and benefits. Biomark Res. 2021 May 01; 9(1):29. Yu B, Gutierrez VP, Carlos A, Hoge G, Pillai A, Kelly JD, Menon V. PMID: 33933168; PMCID: PMC8087886.
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    67. Rapid implementation of a cohort for the study of post-acute sequelae of SARS-CoV-2 infection/COVID-19. medRxiv. 2021 Mar 12. Peluso MJ, Kelly JD, Lu S, Goldberg SA, Davidson MC, Mathur S, Durstenfeld MS, Spinelli MA, Hoh R, Tai V, Fehrman EA, Torres L, Hernandez Y, Williams MC, Arreguin MI, Bautista JA, Ngo LH, Deswal M, Munter SE, Martinez EO, Anglin KA, Romero MD, Tavs J, Rugart PR, Chen JY, Sans HM, Murray VW, Ellis PK, Donohue KC, Massachi JA, Weiss JO, Mehdi I, Pineda-Ramirez J, Tang AF, Wenger M, Assenzio M, Yuan Y, Krone M, Rutishauser RL, Rodriguez-Barraquer I, Greenhouse B, Sauceda JA, Gandhi M, Hsue PY, Henrich TJ, Deeks SG, Martin JN. PMID: 33758895; PMCID: PMC7987054.
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    68. Characterization and Biomarker Analyses of Post-COVID-19 Complications and Neurological Manifestations. Cells. 2021 02 13; 10(2). Sun B, Tang N, Peluso MJ, Iyer NS, Torres L, Donatelli JL, Munter SE, Nixon CC, Rutishauser RL, Rodriguez-Barraquer I, Greenhouse B, Kelly JD, Martin JN, Deeks SG, Henrich TJ, Pulliam L. PMID: 33668514; PMCID: PMC7918597.
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    69. Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19. bioRxiv. 2021 Feb 10. Feyaerts D, Hédou J, Gillard J, Chen H, Tsai ES, Peterson LS, Ando K, Manohar M, Do E, Dhondalay GKR, Fitzpatrick J, Artandi M, Chang I, Snow TT, Chinthrajah RS, Warren CM, Wittman R, Meyerowitz JG, Ganio EA, Stelzer IA, Han X, Verdonk F, Gaudillière DK, Mukherjee N, Tsai AS, Rumer KK, Jiang S, Valdés Ferrer SI, Kelly JD, Furman D, Aghaeepour N, Angst MS, Boyd SD, Pinsky BA, Nolan GP, Nadeau KC, Gaudillière B, McIlwain DR. PMID: 33594362; PMCID: PMC7885914.
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    70. Persistent COVID-19-associated neurocognitive symptoms in non-hospitalized patients. J Neurovirol. 2021 02; 27(1):191-195. Hellmuth J, Barnett TA, Asken BM, Kelly JD, Torres L, Stephens ML, Greenhouse B, Martin JN, Chow FC, Deeks SG, Greene M, Miller BL, Annan W, Henrich TJ, Peluso MJ. PMID: 33528824; PMCID: PMC7852463.
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    71. Prone Positioning in Moderate to Severe Acute Respiratory Distress Syndrome Due to COVID-19: A Cohort Study and Analysis of Physiology. J Intensive Care Med. 2021 Feb; 36(2):241-252. Shelhamer MC, Wesson PD, Solari IL, Jensen DL, Steele WA, Dimitrov VG, Kelly JD, Aziz S, Gutierrez VP, Vittinghoff E, Chung KK, Menon VP, Ambris HA, Baxi SM. PMID: 33380236; PMCID: PMC7780273.
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    72. The Impact of Different Types of Violence on Ebola Virus Transmission During the 2018-2020 Outbreak in the Democratic Republic of the Congo. J Infect Dis. 2020 11 13; 222(12):2021-2029. Kelly JD, Wannier SR, Sinai C, Moe CA, Hoff NA, Blumberg S, Selo B, Mossoko M, Chowell-Puente G, Jones JH, Okitolonda-Wemakoy E, Rutherford GW, Lietman TM, Muyembe-Tamfum JJ, Rimoin AW, Porco TC, Richardson ET. PMID: 32255180; PMCID: PMC7661768.
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    73. Assessing Onchocerciasis Subcriticality from Pre-Intervention Cross-Sectional Surveys. Am J Trop Med Hyg. 2020 07; 103(1):287-294. Kelly JD, Rebollo Polo M, Marie Zoure HG, Oldenburg CE, Keenan JD, Porco TC, Lietman TM. PMID: 32458796; PMCID: PMC7356432.
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    74. Projections of epidemic transmission and estimation of vaccination impact during an ongoing Ebola virus disease outbreak in Northeastern Democratic Republic of Congo, as of Feb. 25, 2019. PLoS Negl Trop Dis. 2019 08; 13(8):e0007512. Worden L, Wannier R, Hoff NA, Musene K, Selo B, Mossoko M, Okitolonda-Wemakoy E, Muyembe Tamfum JJ, Rutherford GW, Lietman TM, Rimoin AW, Porco TC, Kelly JD. PMID: 31381606; PMCID: PMC6695208.
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    75. Estimating the impact of violent events on transmission in Ebola virus disease outbreak, Democratic Republic of the Congo, 2018-2019. Epidemics. 2019 09; 28:100353. Wannier SR, Worden L, Hoff NA, Amezcua E, Selo B, Sinai C, Mossoko M, Njoloko B, Okitolonda-Wemakoy E, Mbala-Kingebeni P, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Richardson ET, Rutherford GW, Jones JH, Lietman TM, Rimoin AW, Porco TC, Kelly JD. PMID: 31378584; PMCID: PMC7363034.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansPHPublic Health
    76. Real-time predictions of the 2018-2019 Ebola virus disease outbreak in the Democratic Republic of the Congo using Hawkes point process models. Epidemics. 2019 09; 28:100354. Kelly JD, Park J, Harrigan RJ, Hoff NA, Lee SD, Wannier R, Selo B, Mossoko M, Njoloko B, Okitolonda-Wemakoy E, Mbala-Kingebeni P, Rutherford GW, Smith TB, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Rimoin AW, Schoenberg FP. PMID: 31395373; PMCID: PMC7358183.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCellsPHPublic Health
    77. Antibiotic Prescription Patterns among Children Younger than 5 Years in Nouna District, Burkina Faso. Am J Trop Med Hyg. 2019 05; 100(5):1121-1124. Sié A, Coulibaly B, Adama S, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Kelly JD, Doan T, Lietman TM, Keenan JD, Oldenburg CE. PMID: 30693860; PMCID: PMC6493961.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    78. Neurological, Cognitive, and Psychological Findings Among Survivors of Ebola Virus Disease From the 1995 Ebola Outbreak in Kikwit, Democratic Republic of Congo: A Cross-sectional Study. Clin Infect Dis. 2019 04 08; 68(8):1388-1393. Kelly JD, Hoff NA, Spencer D, Musene K, Bramble MS, McIlwain D, Okitundu D, Porco TC, Rutherford GW, Glymour MM, Bjornson Z, Mukadi P, Okitolonda-Wemakoy E, Nolan GP, Muyembe-Tamfum JJ, Rimoin AW. PMID: 30107392; PMCID: PMC6452000.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansPHPublic Health
    79. Projections of Ebola outbreak size and duration with and without vaccine use in Équateur, Democratic Republic of Congo, as of May 27, 2018. PLoS One. 2019; 14(3):e0213190. Kelly JD, Worden L, Wannier SR, Hoff NA, Mukadi P, Sinai C, Ackley S, Chen X, Gao D, Selo B, Mossoko M, Okitolonda-Wemakoy E, Richardson ET, Rutherford GW, Lietman TM, Muyembe-Tamfum JJ, Rimoin AW, Porco TC. PMID: 30845236; PMCID: PMC6405095.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansPHPublic Health
    80. Ebola virus disease-related stigma among survivors declined in Liberia over an 18-month, post-outbreak period: An observational cohort study. PLoS Negl Trop Dis. 2019 02; 13(2):e0007185. Kelly JD, Weiser SD, Wilson B, Cooper JB, Glayweon M, Sneller MC, Drew C, Steward WT, Reilly C, Johnson K, Fallah MP. PMID: 30811388; PMCID: PMC6411197.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansPHPublic Health
    81. Evaluation of a community-based ART programme after tapering home visits in rural Sierra Leone: a 24-month retrospective study. SAHARA J. 2018 12; 15(1):138-145. Kelly JD, Frankfurter R, Lurton G, Conteh S, Empson SF, Daboh F, Kargbo B, Giordano T, Mukherjee J, Barrie MB. PMID: 30257611; PMCID: PMC6161614.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    82. Understanding why HIV-infected persons disengaged from pre-ART care in Freetown, Sierra Leone: a qualitative study. AIDS Care. 2019 04; 31(4):494-497. Kelly JD, Hickey MD, Schlough GW, Conteh S, Sesay M, Rutherford GW, Giordano TP, Weiser SD. PMID: 30146898.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    83. Deploying RDTs in the DRC Ebola outbreak. Lancet. 2018 06 23; 391(10139):2499-2500. Dhillon RS, Srikrishna D, Kelly JD. PMID: 29887274.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansPHPublic Health
    84. Beyond vaccines: improving survival rates in the DRC Ebola outbreak. Lancet. 2018 06 09; 391(10137):2321. Kelly JD, Mukadi P, Dhillon RS. PMID: 29807665.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    85. Anatomy of a Hotspot: Chain and Seroepidemiology of Ebola Virus Transmission, Sukudu, Sierra Leone, 2015-16. J Infect Dis. 2018 03 28; 217(8):1214-1221. Kelly JD, Barrie MB, Mesman AW, Karku S, Quiwa K, Drasher M, Schlough GW, Dierberg K, Koedoyoma S, Lindan CP, Jones JH, Chamie G, Worden L, Greenhouse B, Weiser SD, Porco TC, Rutherford GW, Richardson ET. PMID: 29325149; PMCID: PMC6018898.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCellsPHPublic Health
    86. Food Insecurity as a Risk Factor for Outcomes Related to Ebola Virus Disease in Kono District, Sierra Leone: A Cross-Sectional Study. Am J Trop Med Hyg. 2018 05; 98(5):1484-1488. Kelly JD, Richardson ET, Drasher M, Barrie MB, Karku S, Kamara M, Hann K, Dierberg K, Hubbard A, Lindan CP, Farmer PE, Rutherford GW, Weiser SD. PMID: 29557329; PMCID: PMC5953383.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansPHPublic Health
    87. The symbolic violence of 'outbreak': A mixed methods, quasi-experimental impact evaluation of social protection on Ebola survivor wellbeing. Soc Sci Med. 2017 12; 195:77-82. Richardson ET, Kelly JD, Sesay O, Drasher MD, Desai IK, Frankfurter R, Farmer PE, Barrie MB. PMID: 29156248; PMCID: PMC5919219.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansPHPublic Health
    88. Community-Level HIV Stigma as a Driver for HIV Transmission Risk Behaviors and Sexually Transmitted Diseases in Sierra Leone: A Population-Based Study. J Acquir Immune Defic Syndr. 2017 08 01; 75(4):399-407. Kelly JD, Reid MJ, Lahiff M, Tsai AC, Weiser SD. PMID: 28406807; PMCID: PMC5524569.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansPHPublic Health
    89. The predicament of patients with suspected Ebola - Authors' reply. Lancet Glob Health. 2017 07; 5(7):e660-e661. Richardson ET, Fallah MP, Kelly JD, Barrie MB. PMID: 28619225.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    90. The Ebola suspect's dilemma. Lancet Glob Health. 2017 03; 5(3):e254-e256. Richardson ET, Barrie MB, Nutt CT, Kelly JD, Frankfurter R, Fallah MP, Farmer PE. PMID: 28193386.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansPHPublic Health
    91. Minimally Symptomatic Infection in an Ebola 'Hotspot': A Cross-Sectional Serosurvey. PLoS Negl Trop Dis. 2016 11; 10(11):e0005087. Richardson ET, Kelly JD, Barrie MB, Mesman AW, Karku S, Quiwa K, Marsh RH, Koedoyoma S, Daboh F, Barron KP, Grady M, Tucker E, Dierberg KL, Rutherford GW, Barry M, Jones JH, Murray MB, Farmer PE. PMID: 27846221; PMCID: PMC5112953.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCells
    92. Strengthening Health Systems While Responding to a Health Crisis: Lessons Learned by a Nongovernmental Organization During the Ebola Virus Disease Epidemic in Sierra Leone. J Infect Dis. 2016 10 15; 214(suppl 3):S153-S163. Cancedda C, Davis SM, Dierberg KL, Lascher J, Kelly JD, Barrie MB, Koroma AP, George P, Kamara AA, Marsh R, Sumbuya MS, Nutt CT, Scott KW, Thomas E, Bollbach K, Sesay A, Barrie A, Barrera E, Barron K, Welch J, Bhadelia N, Frankfurter RG, Dahl OM, Das S, Rollins RE, Eustis B, Schwartz A, Pertile P, Pavlopoulos I, Mayfield A, Marsh RH, Dibba Y, Kloepper D, Hall A, Huster K, Grady M, Spray K, Walton DA, Daboh F, Nally C, James S, Warren GS, Chang J, Drasher M, Lamin G, Bangura S, Miller AC, Michaelis AP, McBain R, Broadhurst MJ, Murray M, Richardson ET, Philip T, Gottlieb GL, Mukherjee JS, Farmer PE. PMID: 27688219; PMCID: PMC5050485.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansCellsPHPublic Health
    93. Overlooking the importance of immunoassays. Lancet Infect Dis. 2016 10; 16(10):1109-1110. Dhillon RS, Kelly JD, Srikrishna D, Garry RF. PMID: 27676344.
      View in: PubMed   Mentions: 2     Fields:    
    94. Biosocial Approaches to the 2013-2016 Ebola Pandemic. Health Hum Rights. 2016 06; 18(1):115-128. Richardson ET, Barrie MB, Kelly JD, Dibba Y, Koedoyoma S, Farmer PE. PMID: 27781004; PMCID: PMC5070685.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansPHPublic Health
    95. High Rates of Herpes Simplex Virus Type 2 Infection in Homeless Women: Informing Public Health Strategies. J Womens Health (Larchmt). 2016 08; 25(8):840-5. Kelly JD, Cohen J, Grimes B, Philip SS, Weiser SD, Riley ED. PMID: 27243474; PMCID: PMC4982943.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    96. Performance of the GeneXpert Ebola Assay for Diagnosis of Ebola Virus Disease in Sierra Leone: A Field Evaluation Study. PLoS Med. 2016 Mar; 13(3):e1001980. Semper AE, Broadhurst MJ, Richards J, Foster GM, Simpson AJ, Logue CH, Kelly JD, Miller A, Brooks TJ, Murray M, Pollock NR. PMID: 27023868; PMCID: PMC4811569.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    97. The Majority of the Pre-Antiretroviral Population Who Were Lost to Follow-Up Stopped Their Care in Freetown, Sierra Leone: A 12-Month Prospective Cohort Study Starting with HIV Diagnosis. PLoS One. 2016; 11(2):e0149584. Kelly JD, Schlough GW, Conteh S, Barrie MB, Kargbo B, Giordano TP. PMID: 26901765; PMCID: PMC4763157.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    98. Proximate Context of HIV Stigma and Its Association with HIV Testing in Sierra Leone: A Population-Based Study. AIDS Behav. 2016 Jan; 20(1):65-70. Kelly JD, Weiser SD, Tsai AC. PMID: 25771909; PMCID: PMC4570874.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansPHPublic Health
    99. Persistent Ebola Virus in the Eye. N Engl J Med. 2015 11 12; 373(20):1981-2. Kelly JD, Richardson ET, Barry M. PMID: 26559588.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    100. Community Trust and the Ebola Endgame. N Engl J Med. 2015 Aug 27; 373(9):787-9. Dhillon RS, Kelly JD. PMID: 26222382.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansPHPublic Health
    101. ReEBOV Antigen Rapid Test kit for point-of-care and laboratory-based testing for Ebola virus disease: a field validation study. Lancet. 2015 Aug 29; 386(9996):867-74. Broadhurst MJ, Kelly JD, Miller A, Semper A, Bailey D, Groppelli E, Simpson A, Brooks T, Hula S, Nyoni W, Sankoh AB, Kanu S, Jalloh A, Ton Q, Sarchet N, George P, Perkins MD, Wonderly B, Murray M, Pollock NR. PMID: 26119838.
      View in: PubMed   Mentions: 77     Fields:    Translation:HumansCells
    102. Xpert MTB/RIF false detection of rifampin-resistant tuberculosis from prior infection. Am J Respir Crit Care Med. 2014 Dec 01; 190(11):1316-8. Kelly JD, Grace Lin SY, Barry PM, Keh C, Higashi J, Metcalfe JZ. PMID: 25436783; PMCID: PMC5446205.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    103. Make diagnostic centres a priority for Ebola crisis. Nature. 2014 Sep 11; 513(7517):145. Kelly JD. PMID: 25209763.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    104. Use of ultrasound to diagnose and manage a five-liter empyema in a rural clinic in sierra leone. Case Rep Emerg Med. 2014; 2014:173810. Rotte M, Fields JM, Torres S, Dominick C, Kelly JD. PMID: 25050185; PMCID: PMC4090470.
      View in: PubMed   Mentions:
    105. Social support as a predictor of early diagnosis, linkage, retention, and adherence to HIV care: results from the steps study. J Assoc Nurses AIDS Care. 2014 Sep-Oct; 25(5):405-13. Kelly JD, Hartman C, Graham J, Kallen MA, Giordano TP. PMID: 24508174; PMCID: PMC4125558.
      View in: PubMed   Mentions: 71     Fields:    Translation:Humans
    106. Multiple self-report measures of antiretroviral adherence correlated in Sierra Leone, but did they agree? Int J STD AIDS. 2013 Dec; 24(12):931-7. Kelly JD, Hubenthal EA, Lurton G, Empson SF, Barrie MB, Kargbo B, Wagner GJ, Giordano TP. PMID: 23970613.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    107. Housing equity for health equity: a rights-based approach to the control of Lassa fever in post-war Sierra Leone. BMC Int Health Hum Rights. 2013 Jan 02; 13:2. Kelly JD, Barrie MB, Ross RA, Temple BA, Moses LM, Bausch DG. PMID: 23282054; PMCID: PMC3562201.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    108. Ulceronodular syphilis (lues maligna praecox) in a person newly diagnosed with HIV infection. BMJ Case Rep. 2011 Jul 20; 2011. Kelly JD, LeLeux TM, Citron DR, Musher DM, Giordano TP. PMID: 22689612; PMCID: PMC4545021.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    109. Intracranial tuberculomas in adults: a report of twelve consecutive patients in Houston, Texas. Scand J Infect Dis. 2011 Oct; 43(10):785-91. Kelly JD, Teeter LD, Graviss EA, Tweardy DJ. PMID: 21696248.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    110. Mobile phone technologies improve adherence to antiretroviral treatment in a resource-limited setting: a randomized controlled trial of text message reminders. AIDS. 2011 May 15; 25(8):1137; reply 1138-9. Kelly JD, Giordano TP. PMID: 21537118.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    111. Global health: will positive changes for Sierra Leone's health professionals mean the end of its Brain Drain? J Public Health Policy. 2010 Apr; 31(1):112-4. Kelly JD, Barrie MB. PMID: 20200532.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    112. Haitian amputees--lessons learned from Sierra Leone. N Engl J Med. 2010 Mar 18; 362(11):e42. Kelly JD. PMID: 20200359.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
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