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Dan Kelly, MD

Title(s)Assistant Professor, Epidemiology & Biostatistics
SchoolSchool of Medicine
Address550 16th. Street
San Francisco CA 94158
Phone415-476-6224
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    Collapse Biography 
    Collapse Education and Training
    University of California, San FranciscoFellowship2018Infectious Diseases
    University of California, San FranciscoPost-doc2018Prevention Science
    Gorgas Memorial Institute DTMH2017Tropical Medicine
    University of California, BerkeleyMPH2016Public Health - Epidemiology
    Baylor College of MedicineResidency2011Internal Medicine
    Albert Einstein College of MedicineMD2008Medicine
    Princeton UniversityAB2003Chemistry
    Collapse Awards and Honors
    UC San Francisco2019Mentor Award
    National Institutes of Health2016Loan Repayment Program Award
    UC Berkeley2016Sidney MacDonald Russell Family Graduate Fellowship Award
    UC Office of President2015Presidents Global Food Initiative Fellowship Award
    The Clinton Foundation2015Clinton Global Citizen Award (recipient: Wellbody Alliance)
    Malvern Preparatory School2015St. Augustine Alumni Award
    Ministry of Health in Sierra Leone2011Fulbright Scholarship
    Yeshiva University2008Point of Light
    Global Health Education Consortium2008Velji Global Health Project of the Year Award
    Albert Einstein College of Medicine2008Albert S. Kuperman Award for Field Work in Global Health

    Collapse Overview 
    Collapse Overview
    After graduating from Princeton University, Dan Kelly, MD, MPH, went to Albert Einstein College of Medicine, where he pursued a Global Health Fellowship after his third year. In Sierra Leone, a local doctor and he were inspired to start Wellbody Alliance, a health and human rights non-profit organization that provides high-quality healthcare to the rural poor. After internal medicine residency and with a Fulbright scholarship, Dan conducted HIV research in Sierra Leone while building the community health work of Wellbody Alliance to care for the half million people living in rural Kono district. Dan was an infectious disease fellow at University of California, San Francisco, and an MPH student at University of California, Berkeley, when Ebola struck Sierra Leone. After a close friend died of Ebola in August 2014, Dan decided to take a leave of absence from fellowship training and the MPH to take a full-time leadership role in the Ebola response. Dan reached out to his long-time mentor Paul Farmer and established a coalition with Partners In Health in Sierra Leone. Dan spent eight months on the ground in Sierra Leone during the Ebola epidemic and led multiple frontiers of work, ranging from Ebola care to clinical trials of innovative Ebola diagnostics, and integrated Wellbody Alliance into Partners In Health. Dan returned to UCSF and UCB and finished his infectious disease fellowship and MPH. Dan continues to conduct Ebola research in Sierra Leone and Liberia. He employs sero-epidemiology, transmission mapping and modeling techniques, and clinical research cohorts to investigate asymptomatic Ebola virus infection and mild illness. Dan has published on Ebola in New England Journal of Medicine, Nature, and The Lancet.

    Collapse Research 
    Collapse Research Activities and Funding
    Ebola modeling: behavior, asymptomatic infection, and contacts (2019-nCoV Admin Supplement)
    NIH/NIGMS R01GM130900Sep 1, 2019 - Aug 31, 2023
    Role: Co-Investigator
    Training in Clinical and Epidemiological Research for Liberia (TRACER)
    NIH/FIC U2RTW011281Aug 10, 2019 - Apr 30, 2024
    Role: Co-Investigator
    Understanding the epidemiology and natural history of unrecognized Ebola virus infection
    NIH K23AI146268Aug 1, 2019 - Jul 31, 2023
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Global Health
    Collapse Websites
    Collapse In The News

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Assessing Onchocerciasis Subcriticality from Pre-Intervention Cross-Sectional Surveys. Am J Trop Med Hyg. 2020 07; 103(1):287-294. Kelly JD, Rebollo Polo M, Marie Zoure HG, Oldenburg CE, Keenan JD, Porco TC, Lietman TM. PMID: 32458796.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    2. The impact of different types of violence on Ebola virus disease transmission during the 2018-2020 outbreak in the Democratic Republic of the Congo. J Infect Dis. 2020 Apr 07. Kelly JD, Wannier SR, Sinai C, Moe CA, Hoff NA, Blumberg S, Selo B, Mossoko M, Chowell-Puente G, Jones JH, Okitolonda-Wemakoy E, Rutherford GW, Lietman TM, Muyembe-Tamfum JJ, Rimoin AW, Porco TC, Richardson ET. PMID: 32255180.
      View in: PubMed   Mentions:    Fields:    
    3. Projections of epidemic transmission and estimation of vaccination impact during an ongoing Ebola virus disease outbreak in Northeastern Democratic Republic of Congo, as of Feb. 25, 2019. PLoS Negl Trop Dis. 2019 08; 13(8):e0007512. Worden L, Wannier R, Hoff NA, Musene K, Selo B, Mossoko M, Okitolonda-Wemakoy E, Muyembe Tamfum JJ, Rutherford GW, Lietman TM, Rimoin AW, Porco TC, Kelly JD. PMID: 31381606.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCellsPHPublic Health
    4. Estimating the impact of violent events on transmission in Ebola virus disease outbreak, Democratic Republic of the Congo, 2018-2019. Epidemics. 2019 09; 28:100353. Wannier SR, Worden L, Hoff NA, Amezcua E, Selo B, Sinai C, Mossoko M, Njoloko B, Okitolonda-Wemakoy E, Mbala-Kingebeni P, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Richardson ET, Rutherford GW, Jones JH, Lietman TM, Rimoin AW, Porco TC, Kelly JD. PMID: 31378584.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansPHPublic Health
    5. Real-time predictions of the 2018-2019 Ebola virus disease outbreak in the Democratic Republic of the Congo using Hawkes point process models. Epidemics. 2019 09; 28:100354. Kelly JD, Park J, Harrigan RJ, Hoff NA, Lee SD, Wannier R, Selo B, Mossoko M, Njoloko B, Okitolonda-Wemakoy E, Mbala-Kingebeni P, Rutherford GW, Smith TB, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Rimoin AW, Schoenberg FP. PMID: 31395373.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCellsPHPublic Health
    6. Antibiotic Prescription Patterns among Children Younger than 5 Years in Nouna District, Burkina Faso. Am J Trop Med Hyg. 2019 05; 100(5):1121-1124. Sié A, Coulibaly B, Adama S, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Kelly JD, Doan T, Lietman TM, Keenan JD, Oldenburg CE. PMID: 30693860.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    7. Neurological, Cognitive, and Psychological Findings Among Survivors of Ebola Virus Disease From the 1995 Ebola Outbreak in Kikwit, Democratic Republic of Congo: A Cross-sectional Study. Clin Infect Dis. 2019 04 08; 68(8):1388-1393. Kelly JD, Hoff NA, Spencer D, Musene K, Bramble MS, McIlwain D, Okitundu D, Porco TC, Rutherford GW, Glymour MM, Bjornson Z, Mukadi P, Okitolonda-Wemakoy E, Nolan GP, Muyembe-Tamfum JJ, Rimoin AW. PMID: 30107392.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansPHPublic Health
    8. Projections of Ebola outbreak size and duration with and without vaccine use in Équateur, Democratic Republic of Congo, as of May 27, 2018. PLoS One. 2019; 14(3):e0213190. Kelly JD, Worden L, Wannier SR, Hoff NA, Mukadi P, Sinai C, Ackley S, Chen X, Gao D, Selo B, Mossoko M, Okitolonda-Wemakoy E, Richardson ET, Rutherford GW, Lietman TM, Muyembe-Tamfum JJ, Rimoin AW, Porco TC. PMID: 30845236.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    9. Ebola virus disease-related stigma among survivors declined in Liberia over an 18-month, post-outbreak period: An observational cohort study. PLoS Negl Trop Dis. 2019 02; 13(2):e0007185. Kelly JD, Weiser SD, Wilson B, Cooper JB, Glayweon M, Sneller MC, Drew C, Steward WT, Reilly C, Johnson K, Fallah MP. PMID: 30811388.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    10. Evaluation of a community-based ART programme after tapering home visits in rural Sierra Leone: a 24-month retrospective study. SAHARA J. 2018 12; 15(1):138-145. Kelly JD, Frankfurter R, Lurton G, Conteh S, Empson SF, Daboh F, Kargbo B, Giordano T, Mukherjee J, Barrie MB. PMID: 30257611.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    11. Understanding why HIV-infected persons disengaged from pre-ART care in Freetown, Sierra Leone: a qualitative study. AIDS Care. 2019 04; 31(4):494-497. Kelly JD, Hickey MD, Schlough GW, Conteh S, Sesay M, Rutherford GW, Giordano TP, Weiser SD. PMID: 30146898.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    12. Deploying RDTs in the DRC Ebola outbreak. Lancet. 2018 06 23; 391(10139):2499-2500. Dhillon RS, Srikrishna D, Kelly JD. PMID: 29887274.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    13. Beyond vaccines: improving survival rates in the DRC Ebola outbreak. Lancet. 2018 06 09; 391(10137):2321. Kelly JD, Mukadi P, Dhillon RS. PMID: 29807665.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    14. Anatomy of a Hotspot: Chain and Seroepidemiology of Ebola Virus Transmission, Sukudu, Sierra Leone, 2015-16. J Infect Dis. 2018 03 28; 217(8):1214-1221. Kelly JD, Barrie MB, Mesman AW, Karku S, Quiwa K, Drasher M, Schlough GW, Dierberg K, Koedoyoma S, Lindan CP, Jones JH, Chamie G, Worden L, Greenhouse B, Weiser SD, Porco TC, Rutherford GW, Richardson ET. PMID: 29325149.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    15. Food Insecurity as a Risk Factor for Outcomes Related to Ebola Virus Disease in Kono District, Sierra Leone: A Cross-Sectional Study. Am J Trop Med Hyg. 2018 05; 98(5):1484-1488. Kelly JD, Richardson ET, Drasher M, Barrie MB, Karku S, Kamara M, Hann K, Dierberg K, Hubbard A, Lindan CP, Farmer PE, Rutherford GW, Weiser SD. PMID: 29557329.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    16. The symbolic violence of 'outbreak': A mixed methods, quasi-experimental impact evaluation of social protection on Ebola survivor wellbeing. Soc Sci Med. 2017 12; 195:77-82. Richardson ET, Kelly JD, Sesay O, Drasher MD, Desai IK, Frankfurter R, Farmer PE, Barrie MB. PMID: 29156248.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansPHPublic Health
    17. Community-Level HIV Stigma as a Driver for HIV Transmission Risk Behaviors and Sexually Transmitted Diseases in Sierra Leone: A Population-Based Study. . 2017 08 01; 75(4):399-407. Kelly JD, Reid MJ, Lahiff M, Tsai AC, Weiser SD. PMID: 28406807.
      View in: PubMed   Mentions:
    18. The predicament of patients with suspected Ebola - Authors' reply. Lancet Glob Health. 2017 07; 5(7):e660-e661. Richardson ET, Fallah MP, Kelly JD, Barrie MB. PMID: 28619225.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    19. The Ebola suspect's dilemma. Lancet Glob Health. 2017 03; 5(3):e254-e256. Richardson ET, Barrie MB, Nutt CT, Kelly JD, Frankfurter R, Fallah MP, Farmer PE. PMID: 28193386.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    20. Minimally Symptomatic Infection in an Ebola 'Hotspot': A Cross-Sectional Serosurvey. PLoS Negl Trop Dis. 2016 11; 10(11):e0005087. Richardson ET, Kelly JD, Barrie MB, Mesman AW, Karku S, Quiwa K, Marsh RH, Koedoyoma S, Daboh F, Barron KP, Grady M, Tucker E, Dierberg KL, Rutherford GW, Barry M, Jones JH, Murray MB, Farmer PE. PMID: 27846221.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    21. Strengthening Health Systems While Responding to a Health Crisis: Lessons Learned by a Nongovernmental Organization During the Ebola Virus Disease Epidemic in Sierra Leone. J Infect Dis. 2016 10 15; 214(suppl 3):S153-S163. Cancedda C, Davis SM, Dierberg KL, Lascher J, Kelly JD, Barrie MB, Koroma AP, George P, Kamara AA, Marsh R, Sumbuya MS, Nutt CT, Scott KW, Thomas E, Bollbach K, Sesay A, Barrie A, Barrera E, Barron K, Welch J, Bhadelia N, Frankfurter RG, Dahl OM, Das S, Rollins RE, Eustis B, Schwartz A, Pertile P, Pavlopoulos I, Mayfield A, Marsh RH, Dibba Y, Kloepper D, Hall A, Huster K, Grady M, Spray K, Walton DA, Daboh F, Nally C, James S, Warren GS, Chang J, Drasher M, Lamin G, Bangura S, Miller AC, Michaelis AP, McBain R, Broadhurst MJ, Murray M, Richardson ET, Philip T, Gottlieb GL, Mukherjee JS, Farmer PE. PMID: 27688219.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCellsPHPublic Health
    22. Overlooking the importance of immunoassays. Lancet Infect Dis. 2016 10; 16(10):1109-1110. Dhillon RS, Kelly JD, Srikrishna D, Garry RF. PMID: 27676344.
      View in: PubMed   Mentions: 1     Fields:    
    23. Biosocial Approaches to the 2013-2016 Ebola Pandemic. Health Hum Rights. 2016 06; 18(1):115-128. Richardson ET, Barrie MB, Kelly JD, Dibba Y, Koedoyoma S, Farmer PE. PMID: 27781004.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansPHPublic Health
    24. High Rates of Herpes Simplex Virus Type 2 Infection in Homeless Women: Informing Public Health Strategies. J Womens Health (Larchmt). 2016 08; 25(8):840-5. Kelly JD, Cohen J, Grimes B, Philip SS, Weiser SD, Riley ED. PMID: 27243474.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    25. Performance of the GeneXpert Ebola Assay for Diagnosis of Ebola Virus Disease in Sierra Leone: A Field Evaluation Study. PLoS Med. 2016 Mar; 13(3):e1001980. Semper AE, Broadhurst MJ, Richards J, Foster GM, Simpson AJ, Logue CH, Kelly JD, Miller A, Brooks TJ, Murray M, Pollock NR. PMID: 27023868.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    26. The Majority of the Pre-Antiretroviral Population Who Were Lost to Follow-Up Stopped Their Care in Freetown, Sierra Leone: A 12-Month Prospective Cohort Study Starting with HIV Diagnosis. PLoS One. 2016; 11(2):e0149584. Kelly JD, Schlough GW, Conteh S, Barrie MB, Kargbo B, Giordano TP. PMID: 26901765.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    27. Proximate Context of HIV Stigma and Its Association with HIV Testing in Sierra Leone: A Population-Based Study. AIDS Behav. 2016 Jan; 20(1):65-70. Kelly JD, Weiser SD, Tsai AC. PMID: 25771909.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansPHPublic Health
    28. Persistent Ebola Virus in the Eye. N Engl J Med. 2015 11 12; 373(20):1981-2. Kelly JD, Richardson ET, Barry M. PMID: 26559588.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    29. Community Trust and the Ebola Endgame. N Engl J Med. 2015 Aug 27; 373(9):787-9. Dhillon RS, Kelly JD. PMID: 26222382.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansPHPublic Health
    30. ReEBOV Antigen Rapid Test kit for point-of-care and laboratory-based testing for Ebola virus disease: a field validation study. Lancet. 2015 Aug 29; 386(9996):867-74. Broadhurst MJ, Kelly JD, Miller A, Semper A, Bailey D, Groppelli E, Simpson A, Brooks T, Hula S, Nyoni W, Sankoh AB, Kanu S, Jalloh A, Ton Q, Sarchet N, George P, Perkins MD, Wonderly B, Murray M, Pollock NR. PMID: 26119838.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansCells
    31. Xpert MTB/RIF false detection of rifampin-resistant tuberculosis from prior infection. Am J Respir Crit Care Med. 2014 Dec 01; 190(11):1316-8. Kelly JD, Grace Lin SY, Barry PM, Keh C, Higashi J, Metcalfe JZ. PMID: 25436783.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    32. Make diagnostic centres a priority for Ebola crisis. Nature. 2014 Sep 11; 513(7517):145. Kelly JD. PMID: 25209763.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    33. Use of ultrasound to diagnose and manage a five-liter empyema in a rural clinic in sierra leone. Case Rep Emerg Med. 2014; 2014:173810. Rotte M, Fields JM, Torres S, Dominick C, Kelly JD. PMID: 25050185.
      View in: PubMed   Mentions:
    34. Social support as a predictor of early diagnosis, linkage, retention, and adherence to HIV care: results from the steps study. J Assoc Nurses AIDS Care. 2014 Sep-Oct; 25(5):405-13. Kelly JD, Hartman C, Graham J, Kallen MA, Giordano TP. PMID: 24508174.
      View in: PubMed   Mentions: 40     Fields:    Translation:Humans
    35. Multiple self-report measures of antiretroviral adherence correlated in Sierra Leone, but did they agree? Int J STD AIDS. 2013 Dec; 24(12):931-7. Kelly JD, Hubenthal EA, Lurton G, Empson SF, Barrie MB, Kargbo B, Wagner GJ, Giordano TP. PMID: 23970613.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    36. Housing equity for health equity: a rights-based approach to the control of Lassa fever in post-war Sierra Leone. BMC Int Health Hum Rights. 2013 Jan 02; 13:2. Kelly JD, Barrie MB, Ross RA, Temple BA, Moses LM, Bausch DG. PMID: 23282054.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    37. Ulceronodular syphilis (lues maligna praecox) in a person newly diagnosed with HIV infection. BMJ Case Rep. 2011 Jul 20; 2011. Kelly JD, LeLeux TM, Citron DR, Musher DM, Giordano TP. PMID: 22689612.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    38. Intracranial tuberculomas in adults: a report of twelve consecutive patients in Houston, Texas. Scand J Infect Dis. 2011 Oct; 43(10):785-91. Kelly JD, Teeter LD, Graviss EA, Tweardy DJ. PMID: 21696248.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    39. Mobile phone technologies improve adherence to antiretroviral treatment in a resource-limited setting: a randomized controlled trial of text message reminders. AIDS. 2011 May 15; 25(8):1137; reply 1138-9. Kelly JD, Giordano TP. PMID: 21537118.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    40. Global health: will positive changes for Sierra Leone's health professionals mean the end of its Brain Drain? J Public Health Policy. 2010 Apr; 31(1):112-4. Kelly JD, Barrie MB. PMID: 20200532.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    41. Haitian amputees--lessons learned from Sierra Leone. N Engl J Med. 2010 Mar 18; 362(11):e42. Kelly JD. PMID: 20200359.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
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