John Hawkins, MD

Title(s)Visiting Resident, BCH CLINICAL OPERATIONS
SchoolChancellor/EVC/FAS
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Computational pipeline for designing guide RNAs for mismatch-CRISPRi. STAR Protoc. 2021 06 18; 2(2):100521. van Gestel J, Hawkins JS, Todor H, Gross CA. PMID: 34027480; PMCID: PMC8121773.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    2. Mismatch-CRISPRi Reveals the Co-varying Expression-Fitness Relationships of Essential Genes in Escherichia coli and Bacillus subtilis. Cell Syst. 2020 11 18; 11(5):523-535.e9. Hawkins JS, Silvis MR, Koo BM, Peters JM, Osadnik H, Jost M, Hearne CC, Weissman JS, Todor H, Gross CA. PMID: 33080209; PMCID: PMC7704046.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    3. Titrating gene expression using libraries of systematically attenuated CRISPR guide RNAs. Nat Biotechnol. 2020 03; 38(3):355-364. Jost M, Santos DA, Saunders RA, Horlbeck MA, Hawkins JS, Scaria SM, Norman TM, Hussmann JA, Liem CR, Gross CA, Weissman JS. PMID: 31932729; PMCID: PMC7065968.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    4. Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi. Nat Microbiol. 2019 02; 4(2):244-250. Peters JM, Koo BM, Patino R, Heussler GE, Hearne CC, Qu J, Inclan YF, Hawkins JS, Lu CHS, Silvis MR, Harden MM, Osadnik H, Peters JE, Engel JN, Dutton RJ, Grossman AD, Gross CA, Rosenberg OS. PMID: 30617347; PMCID: PMC6424567.
      View in: PubMed   Mentions: 47     Fields:    Translation:Cells
    5. Let-7 microRNA-dependent control of leukotriene signaling regulates the transition of hematopoietic niche in mice. Nat Commun. 2017 07 25; 8(1):128. Jiang X, Hawkins JS, Lee J, Lizama CO, Bos FL, Zape JP, Ghatpande P, Peng Y, Louie J, Lagna G, Zovein AC, Hata A. PMID: 28743859; PMCID: PMC5527007.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    6. Fluorescent tagged episomals for stoichiometric induced pluripotent stem cell reprogramming. Stem Cell Res Ther. 2017 06 05; 8(1):132. Schmitt CE, Morales BM, Schmitz EMH, Hawkins JS, Lizama CO, Zape JP, Hsiao EC, Zovein AC. PMID: 28583172; PMCID: PMC5460403.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    7. A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria. Cell. 2016 Jun 02; 165(6):1493-1506. Peters JM, Colavin A, Shi H, Czarny TL, Larson MH, Wong S, Hawkins JS, Lu CHS, Koo BM, Marta E, Shiver AL, Whitehead EH, Weissman JS, Brown ED, Qi LS, Huang KC, Gross CA. PMID: 27238023; PMCID: PMC4894308.
      View in: PubMed   Mentions: 213     Fields:    Translation:Cells
    8. Bacterial CRISPR: accomplishments and prospects. Curr Opin Microbiol. 2015 Oct; 27:121-6. Peters JM, Silvis MR, Zhao D, Hawkins JS, Gross CA, Qi LS. PMID: 26363124; PMCID: PMC4659716.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    9. Single-cell resolution of morphological changes in hemogenic endothelium. Development. 2015 Aug 01; 142(15):2719-24. Bos FL, Hawkins JS, Zovein AC. PMID: 26243871; PMCID: PMC4529027.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    10. Repression of arterial genes in hemogenic endothelium is sufficient for haematopoietic fate acquisition. Nat Commun. 2015 Jul 23; 6:7739. Lizama CO, Hawkins JS, Schmitt CE, Bos FL, Zape JP, Cautivo KM, Borges Pinto H, Rhyner AM, Yu H, Donohoe ME, Wythe JD, Zovein AC. PMID: 26204127; PMCID: PMC4519987.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    11. Emergence of hematopoietic stem and progenitor cells involves a Chd1-dependent increase in total nascent transcription. Proc Natl Acad Sci U S A. 2015 Apr 07; 112(14):E1734-43. Koh FM, Lizama CO, Wong P, Hawkins JS, Zovein AC, Ramalho-Santos M. PMID: 25831528; PMCID: PMC4394284.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    12. Targeted Transcriptional Repression in Bacteria Using CRISPR Interference (CRISPRi). Methods Mol Biol. 2015; 1311:349-62. Hawkins JS, Wong S, Peters JM, Almeida R, Qi LS. PMID: 25981485; PMCID: PMC4845913.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    13. Generation of oligodendroglial cells by direct lineage conversion. Nat Biotechnol. 2013 May; 31(5):434-9. Yang N, Zuchero JB, Ahlenius H, Marro S, Ng YH, Vierbuchen T, Hawkins JS, Geissler R, Barres BA, Wernig M. PMID: 23584610; PMCID: PMC3677690.
      View in: PubMed   Mentions: 150     Fields:    Translation:AnimalsCells
    14. In situ genetic correction of the sickle cell anemia mutation in human induced pluripotent stem cells using engineered zinc finger nucleases. Stem Cells. 2011 Nov; 29(11):1717-26. Sebastiano V, Maeder ML, Angstman JF, Haddad B, Khayter C, Yeo DT, Goodwin MJ, Hawkins JS, Ramirez CL, Batista LF, Artandi SE, Wernig M, Joung JK. PMID: 21898685; PMCID: PMC3285772.
      View in: PubMed   Mentions: 153     Fields:    Translation:HumansCells
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