John Mongan, MD, PhD
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Title(s) | Associate Professor, Radiology |
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School | School of Medicine |
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Address | 505 Parnassus Avenue San Francisco CA 94117
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Phone | 415-514-6002 |
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ORCID
.gif) | 0000-0003-2765-7451  |
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vCard | Download vCard |
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Biography UC San Francisco, San Francisco, California | | 2014 | Abdominal Imaging Fellowship | UC San Francisco, San Francisco, California | | 2013 | Radiology Residency | UC San Diego, La Jolla, California | MD | 2008 | Medicine | UC San Diego, La Jolla, California | PhD | 2006 | Bioinformatics | Stanford, Palo Alto, California | BS | 1999 | Chemistry |
UCSF | 2013 | | Margulis Society Outstanding Resident Researcher | UCSD | 2008 | | Outstanding Academic Accomplishments | UCSD | 2008 | | Free Clinic Leadership Award | Biophysical Society | 2005 | | Student Research Achievement Award |
Overview John Mongan, MD, PhD, is the Vice Chair for Informatics and an Associate Professor of Clinical Radiology (Abdominal Imaging and Ultrasound section) in the Department of Radiology and Biomedical Imaging at the University of California, San Francisco.
His areas of research interest include informatics, electronic medical records, improving imaging efficacy, dual-energy computed tomography, and contrast media. Dr. Mongan also enjoys mentoring and instructing radiology residents, explaining and illustrating imaging cases.
As Vice Chair for Informatics, Dr. Mongan has led a group from UC Health in efforts to outline the requirements for a UC system-wide decision support system. Dr. Mongan takes an interest in improving quality, safety and efficiency of medical care through increased and improved incorporation of computers and technology. He helped lead a formal Quality Improvement initiative to ensure compliance with a new state law requiring radiation dose reporting.
Dr. Mongan is a 2013 UCSF Margulis Society Outstanding Resident Researcher Awardee. He has published over 30 peer-reviewed articles, written a book, contributed to a case review book, and is first inventor on 3 US patents. He has also contributed to software development at UCSF and UCSD.
artificial intelligence, big data, biomedical ontologies, clinical decision support, clinical informatics, data analysis, data anonymization, data science, data visualization, enterprise architecture, imaging informatics, machine learning, medical informatics, natural language processing, radiology information systems, software design
ORNG Applications Bibliographic
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The RSNA International COVID-19 Open Annotated Radiology Database (RICORD). Radiology. 2021 Jan 05; 203957.
Tsai EB, Simpson S, Lungren M, Hershman M, Roshkovan L, Colak E, Erickson BJ, Shih G, Stein A, Kalpathy-Cramer J, Shen J, Hafez M, John S, Rajiah P, Pogatchnik BP, Mongan J, Altinmakas E, Ranschaert ER, Kitamura FC, Topff L, Moy L, Kanne JP, Wu CC. PMID: 33399506.
View in: PubMed Mentions: Fields:
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Checklist for Artificial Intelligence in Medical Imaging (CLAIM): A guide for authors and reviewers. Radiology: Artificial Intelligence. 2020; 2(2).
John Mongan, Linda Moy, Charles E Kahn. View Publication.
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Artificial Intelligence and Human Life: Five Lessons for Radiology from the 737 Max Disasters. Radiology: Artificial Intelligence. 2020; 2(2).
John Mongan, Marc Kohli. View Publication.
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What Physicians and Health Organizations Should Know About Mandated Imaging Appropriate Use Criteria. Ann Intern Med. 2019 06 18; 170(12):880-885.
Hentel KD, Menard A, Mongan J, Durack JC, Johnson PT, Raja AS, Khorasani R. PMID: 31181572.
View in: PubMed Mentions: 2 Fields: Translation: Humans
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Potential Effect of the Protecting Access to Medicare Act on Use of Advanced Diagnostic Imaging in the Emergency Department: An Analysis of the National Hospital Ambulatory Care Survey. Radiology. 2019 04; 291(1):188-193.
Fahimi J, Kanzaria HK, Mongan J, Kahn KL, Wang RC. PMID: 30694161.
View in: PubMed Mentions: 1 Fields: Translation: Humans
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How far have we come? Artificial intelligence for chest radiograph interpretation. Clin Radiol. 2019 05; 74(5):338-345.
Kallianos K, Mongan J, Antani S, Henry T, Taylor A, Abuya J, Kohli M. PMID: 30704666.
View in: PubMed Mentions: 11 Fields: Translation: Humans
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Automated detection of moderate and large pneumothorax on frontal chest X-rays using deep convolutional neural networks: A retrospective study. PLoS Med. 2018 11; 15(11):e1002697.
Taylor AG, Mielke C, Mongan J. PMID: 30457991.
View in: PubMed Mentions: 15 Fields: Translation: Humans
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Impact of PACS-EMR Integration on Radiologist Usage of the EMR. J Digit Imaging. 2018 10; 31(5):611-614.
Mongan J, Avrin D. PMID: 29696473.
View in: PubMed Mentions: 1 Fields: Translation: Humans
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Association between misty mesentery with baseline or new diagnosis of cancer: a matched cohort study. Clin Imaging. 2018 Jul - Aug; 50:57-61.
Marcus SG, Candia S, Kohli MD, Mongan J, Zagoria RJ, Behr SC, Sun D, Westphalen AC. PMID: 29276962.
View in: PubMed Mentions: Fields: Translation: Humans
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Can Radiologists Learn From Airport Baggage Screening?: A Survey About Using Fictional Patients for Quality Assurance. Acad Radiol. 2018 02; 25(2):226-234.
Phelps A, Callen AL, Marcovici P, Naeger DM, Mongan J, Webb EM. PMID: 29122472.
View in: PubMed Mentions: Fields: Translation: HumansPHPublic Health
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Correlate: A PACS- and EHR-integrated Tool Leveraging Natural Language Processing to Provide Automated Clinical Follow-up. Radiographics. 2017 Sep-Oct; 37(5):1451-1460.
Kovacs MD, Mesterhazy J, Avrin D, Urbania T, Mongan J. PMID: 28898194.
View in: PubMed Mentions: 1 Fields: Translation: Humans
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Contrast Enhanced Ultrasound as a Radiation-Free Alternative to Fluoroscopic Nephrostogram for Evaluating Ureteral Patency. J Urol. 2017 12; 198(6):1367-1373.
Chi T, Usawachintachit M, Weinstein S, Kohi MP, Taylor A, Tzou DT, Chang HC, Stoller M, Mongan J. PMID: 28743528.
View in: PubMed Mentions: 6 Fields: Translation: Humans
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PD11-05 CONTRAST-ENHANCED ULTRASOUND AS A REPLACEMENT FOR FLUOROSCOPIC NEPHROSTOGRAM FOLLOWING PERCUTANEOUS NEPHROLITHOTOMY. The Journal of Urology. 2017 Apr 1; 197(4):e207-e208.
Thomas Chi, Manint Usawachintachit, David Tzou, Helena Chang, Benjamin Sherer, Marshall Stoller, Stefanie Weinstein, John Mongan. .
View in: Publisher Site Mentions:
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High-Throughput Classification of Radiographs Using Deep Convolutional Neural Networks. J Digit Imaging. 2017 02; 30(1):95-101.
Rajkomar A, Lingam S, Taylor AG, Blum M, Mongan J. PMID: 27730417.
View in: PubMed Mentions: 16 Fields: Translation: Humans
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Contrast Enhanced Ultrasound Detects Recurrent Renal Cell Carcinoma in the Setting of Chronic Renal Insufficiency. Clin Genitourin Cancer. 2017 08; 15(4):e735-e737.
Tzou DT, Weinstein S, Usawachintachit M, Mongan J, Greene KL, Chi T. PMID: 28131753.
View in: PubMed Mentions: Fields: Translation: Humans
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Feasibility of Retrograde Ureteral Contrast Injection to Guide Ultrasonographic Percutaneous Renal Access in the Nondilated Collecting System. J Endourol. 2017 02; 31(2):129-134.
Usawachintachit M, Tzou DT, Mongan J, Taguchi K, Weinstein S, Chi T. PMID: 27809568.
View in: PubMed Mentions: Fields: Translation: Humans
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Antegrade ultrasound contrast injection facilitates accurate nephrostomy tube positioning during percutaneous nephrolithotomy. Int J Urol. 2017 03; 24(3):239-240.
Usawachintachit M, Tzou DT, Mongan J, Weinstein S, Chi T. PMID: 27862356.
View in: PubMed Mentions: Fields: Translation: Humans
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Feasibility of Antegrade Contrast-enhanced US Nephrostograms to Evaluate Ureteral Patency. Radiology. 2017 04; 283(1):273-279.
Chi T, Usawachintachit M, Mongan J, Kohi MP, Taylor A, Jha P, Chang HC, Stoller M, Goldstein R, Weinstein S. PMID: 28234551.
View in: PubMed Mentions: 3 Fields: Translation: Humans
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Definition of Confidence Interval. Radiographics. 2016 Sep-Oct; 36(5):1602.
Mongan J, Sebro R. PMID: 27618334.
View in: PubMed Mentions: Fields:
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Beyond Prostate Adenocarcinoma: Expanding the Differential Diagnosis in Prostate Pathologic Conditions. Radiographics. 2016 Jul-Aug; 36(4):1055-75.
Li Y, Mongan J, Behr SC, Sud S, Coakley FV, Simko J, Westphalen AC. PMID: 27315446.
View in: PubMed Mentions: 5 Fields: Translation: Humans
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PD14-01 CAN CONTRAST-ENHANCED ULTRASOUND REPLACE FLUOROSCOPIC NEPHROSTOGRAM?. The Journal of Urology. 2016 Apr 1; 195(4):e302-e303.
Manint Usawachintachit, John Mongan, Matthew Truesdale, Stefanie Weinstein, Thomas Chi. .
View in: Publisher Site Mentions:
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In vivo comparison of tantalum, tungsten, and bismuth enteric contrast agents to complement intravenous iodine for double-contrast dual-energy CT of the bowel. Contrast Media Mol Imaging. 2016 07; 11(4):254-61.
Rathnayake S, Mongan J, Torres AS, Colborn R, Gao DW, Yeh BM, Fu Y. PMID: 26892945.
View in: PubMed Mentions: 8 Fields: Translation: Animals
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Age and sex-dependent trends in pulmonary embolism testing and derivation of a clinical decision rule for young patients. Emerg Med J. 2015 Nov; 32(11):840-5.
Mongan J, Kline J, Smith-Bindman R. PMID: 25755270.
View in: PubMed Mentions: 3 Fields: Translation: Humans
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The radiologist's workflow environment: evaluation of disruptors and potential implications. J Am Coll Radiol. 2014 Jun; 11(6):589-93.
Yu JP, Kansagra AP, Mongan J. PMID: 24775910.
View in: PubMed Mentions: 8 Fields:
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Extravasated contrast material in penetrating abdominopelvic trauma: dual-contrast dual-energy CT for improved diagnosis--preliminary results in an animal model. Radiology. 2013 Sep; 268(3):738-42.
Mongan J, Rathnayake S, Fu Y, Gao DW, Yeh BM. PMID: 23687174.
View in: PubMed Mentions: 9 Fields: Translation: HumansAnimals
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Pancreatic imaging mimics: part 1, imaging mimics of pancreatic adenocarcinoma. AJR Am J Roentgenol. 2012 Aug; 199(2):301-8.
Coakley FV, Hanley-Knutson K, Mongan J, Barajas R, Bucknor M, Qayyum A. PMID: 22826390.
View in: PubMed Mentions: 13 Fields: Translation: Humans
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In vivo differentiation of complementary contrast media at dual-energy CT. Radiology. 2012 Oct; 265(1):267-72.
Mongan J, Rathnayake S, Fu Y, Wang R, Jones EF, Gao DW, Yeh BM. PMID: 22778447.
View in: PubMed Mentions: 15 Fields: Translation: Animals
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Analysis of integral expressions for effective Born radii. J Chem Phys. 2007 Nov 14; 127(18):185101.
Mongan J, Svrcek-Seiler WA, Onufriev A. PMID: 18020664.
View in: PubMed Mentions: 14 Fields:
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Generalized Born model with a simple, robust molecular volume correction. J Chem Theory Comput. 2007 Jan 01; 3(1):156-169.
Mongan J, Simmerling C, McCammon JA, Case DA, Onufriev A. PMID: 21072141.
View in: PubMed Mentions: 92 Fields:
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Evaluation and binding-mode prediction of thiopyrone-based inhibitors of anthrax lethal factor. ChemMedChem. 2006 Jul; 1(7):694-7.
Lewis JA, Mongan J, McCammon JA, Cohen SM. PMID: 16902919.
View in: PubMed Mentions: 15 Fields: Translation: Cells
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Potent, selective pyrone-based inhibitors of stromelysin-1. J Am Chem Soc. 2005 Oct 19; 127(41):14148-9.
Puerta DT, Mongan J, Tran BL, McCammon JA, Cohen SM. PMID: 16218585.
View in: PubMed Mentions: 25 Fields: Translation: Cells
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Limitations of atom-centered dielectric functions in implicit solvent models. J Phys Chem B. 2005 Aug 11; 109(31):14769-72.
Swanson JM, Mongan J, McCammon JA. PMID: 16852866.
View in: PubMed Mentions: 29 Fields:
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Biomolecular simulations at constant pH. Curr Opin Struct Biol. 2005 Apr; 15(2):157-63.
Mongan J, Case DA. PMID: 15837173.
View in: PubMed Mentions: 48 Fields: Translation: Cells
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Constant pH molecular dynamics in generalized Born implicit solvent. J Comput Chem. 2004 Dec; 25(16):2038-48.
Mongan J, Case DA, McCammon JA. PMID: 15481090.
View in: PubMed Mentions: 128 Fields:
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Accelerated molecular dynamics: a promising and efficient simulation method for biomolecules. J Chem Phys. 2004 Jun 22; 120(24):11919-29.
Hamelberg D, Mongan J, McCammon JA. PMID: 15268227.
View in: PubMed Mentions: 332 Fields: Translation: Cells
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Interactive essential dynamics. J Comput Aided Mol Des. 2004 Jun; 18(6):433-6.
Mongan J. PMID: 15663003.
View in: PubMed Mentions: 28 Fields:
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Year | Publications |
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2004 | 3 | 2005 | 3 | 2006 | 1 | 2007 | 2 | 2012 | 2 | 2013 | 1 | 2014 | 1 | 2015 | 1 | 2016 | 8 | 2017 | 6 | 2018 | 2 | 2019 | 3 | 2020 | 2 | 2021 | 1 |
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This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
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