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Jonathan Lee, MD

Title(s)Assistant Professor, Medicine
SchoolSchool of Medicine
Address1545 Divisadero Street
San Francisco CA 94115
Phone415-885-3861
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    Collapse Biography 
    Collapse Education and Training
    Duke UniversityBSE06/2006Biomedical Engineering
    University of PittsburghMD05/2011School of Medicine
    University of Pittsburgh05/2014Internal Medicine Residency
    University of Pittsburgh05/2015Chief Resident
    UCSFMasters in Advanced Studies05/2017Primary Care Research Fellowship
    University of California, San Francisco, CA2018Diversity, Equity, and Inclusion Champion Training

    Collapse Overview 
    Collapse Overview
    Dr. Jonathan Shing-Jih Lee is an internal medicine specialist who provides primary care. He is also the Director of Quality and Clinical Innovation for the Division of General Internal Medicine.

    Lee's research investigates professional burnout among physicians and medical support staff. Previously, he studied ways to improve the quality of care for common medical conditions, including pneumonia. He is also a consultant with UCSF's Lean Transformation Office, which aims to enhance care through measures such as deepening staff involvement and strengthening the focus on patients' needs. He teaches about quality improvement and participates in related initiatives throughout UCSF Medical Center.

    Lee earned his bachelor's degree in biomedical engineering at Duke University. He then earned his medical degree from the University of Pittsburgh School of Medicine, where he also completed a residency in internal medicine. He completed a fellowship in primary care research at UCSF.

    Lee is a member of the Society of General Internal Medicine.

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Utilizing Lean Leadership Principles to Build an Academic Primary Care Practice of the Future. J Gen Intern Med. 2020 Dec; 35(12):3650-3655. Morduchowicz S, Lee JS, Choi L, Kivlahan C, Null D, Smith S, Feldman MD. PMID: 32989712.
      View in: PubMed   Mentions:    Fields:    
    2. Follow-up of incidental pulmonary nodules and association with mortality in a safety-net cohort. Diagnosis (Berl). 2019 11 26; 6(4):351-359. Lee JS, Lisker S, Vittinghoff E, Cherian R, McCoy DB, Rybkin A, Su G, Sarkar U. PMID: 31373897.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Change in Faculty Perceptions of Burnout and Work Life in an Academic General Medicine Clinic: a Pre-Post Study. J Gen Intern Med. 2019 10; 34(10):1973-1974. Lee JS, Karliner LS, Julian KA, Linzer M, Feldman MD. PMID: 31183687.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    4. Clinician Perspectives on the Management of Abnormal Subcritical Tests in an Urban Academic Safety-Net Health Care System. Jt Comm J Qual Patient Saf. 2017 10; 43(10):517-523. Clarity C, Sarkar U, Lee J, Handley MA, Goldman LE. PMID: 28942776.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    5. Appropriate Reconciliation of Cardiovascular Medications After Elective Surgery and Postdischarge Acute Hospital and Ambulatory Visits. J Hosp Med. 2017 09; 12(9):723-730. Lee JS, Gonzales R, Vittinghoff E, Corbett KK, Fleischmann KE, Sehgal N, Auerbach AD. PMID: 28914276.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. Hospital discharge preparedness for patients with limited English proficiency: A mixed methods study of bedside interpreter-phones. Patient Educ Couns. 2018 Jan; 101(1):25-32. Lee JS, Nápoles A, Mutha S, Pérez-Stable EJ, Gregorich SE, Livaudais-Toman J, Karliner LS. PMID: 28774652.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    7. Increased Access to Professional Interpreters in the Hospital Improves Informed Consent for Patients with Limited English Proficiency. J Gen Intern Med. 2017 Aug; 32(8):863-870. Lee JS, Pérez-Stable EJ, Gregorich SE, Crawford MH, Green A, Livaudais-Toman J, Karliner LS. PMID: 28185201.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    8. Duration of Antibiotic Therapy for Community-Acquired Pneumonia in the Era of Personalized Medicine. JAMA. 2016 12 20; 316(23):2544-2545. Lee JS, Giesler DL, Fine MJ. PMID: 27997641.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. Management of Community-Acquired Pneumonia--Reply. JAMA. 2016 Jul 12; 316(2):222-3. Lee JS, Giesler DL, Fine MJ. PMID: 27404195.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Antibiotic Therapy for Adults Hospitalized With Community-Acquired Pneumonia: A Systematic Review. JAMA. 2016 Feb 09; 315(6):593-602. Lee JS, Giesler DL, Gellad WF, Fine MJ. PMID: 26864413.
      View in: PubMed   Mentions: 20     Fields:    Translation:Humans
    11. Quality and equity of care in U.S. hospitals. N Engl J Med. 2014 Dec 11; 371(24):2298-308. Trivedi AN, Nsa W, Hausmann LR, Lee JS, Ma A, Bratzler DW, Mor MK, Baus K, Larbi F, Fine MJ. PMID: 25494269.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    12. The debate on antibiotic therapy for patients hospitalized for pneumonia: where should we go from here? JAMA Intern Med. 2014 Dec; 174(12):1901-3. Lee JS, Fine MJ. PMID: 25285980.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    13. Quality of care for elderly patients hospitalized for pneumonia in the United States, 2006 to 2010. JAMA Intern Med. 2014 Nov; 174(11):1806-14. Lee JS, Nsa W, Hausmann LR, Trivedi AN, Bratzler DW, Auden D, Mor MK, Baus K, Larbi FM, Fine MJ. PMID: 25201438.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    14. Processes of care and outcomes for community-acquired pneumonia. Am J Med. 2011 Dec; 124(12):1175.e9-17. Lee JS, Primack BA, Mor MK, Stone RA, Obrosky DS, Yealy DM, Fine MJ. PMID: 22000624.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
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