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Jonathan Lee, MD

Title(s)Assistant Professor, Medicine
SchoolSchool of Medicine
Phone415-885-3861
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    Collapse Biography 
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    Duke UniversityBSE06/2006Biomedical Engineering
    University of PittsburghMD05/2011School of Medicine
    University of Pittsburgh05/2014Internal Medicine Residency
    University of Pittsburgh05/2015Chief Resident
    UCSFMasters in Advanced Studies05/2017Primary Care Research Fellowship
    University of California, San Francisco, CA2018Diversity, Equity, and Inclusion Champion Training

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    Dr. Jonathan Shing-Jih Lee is an internal medicine specialist who provides primary care. He is also the Director of Quality and Clinical Innovation for the Division of General Internal Medicine.

    Lee's research investigates professional burnout among physicians and medical support staff. Previously, he studied ways to improve the quality of care for common medical conditions, including pneumonia. He is also a consultant with UCSF's Lean Transformation Office, which aims to enhance care through measures such as deepening staff involvement and strengthening the focus on patients' needs. He teaches about quality improvement and participates in related initiatives throughout UCSF Medical Center.

    Lee earned his bachelor's degree in biomedical engineering at Duke University. He then earned his medical degree from the University of Pittsburgh School of Medicine, where he also completed a residency in internal medicine. He completed a fellowship in primary care research at UCSF.

    Lee is a member of the Society of General Internal Medicine.

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Lee JS, Karliner LS, Julian KA, Linzer M, Feldman MD. Change in Faculty Perceptions of Burnout and Work Life in an Academic General Medicine Clinic: a Pre-Post Study. J Gen Intern Med. 2019 Jun 10. PMID: 31183687.
      View in: PubMed
    2. Lee JS, Lisker S, Vittinghoff E, Cherian R, McCoy DB, Rybkin A, Su G, Sarkar U. Follow-up of incidental pulmonary nodules and association with mortality in a safety-net cohort. Diagnosis (Berl). 2019 May 09. PMID: 31373897.
      View in: PubMed
    3. Clarity C, Sarkar U, Lee J, Handley MA, Goldman LE. Clinician Perspectives on the Management of Abnormal Subcritical Tests in an Urban Academic Safety-Net Health Care System. Jt Comm J Qual Patient Saf. 2017 10; 43(10):517-523. PMID: 28942776.
      View in: PubMed
    4. Lee JS, Gonzales R, Vittinghoff E, Corbett KK, Fleischmann KE, Sehgal N, Auerbach AD. Appropriate Reconciliation of Cardiovascular Medications After Elective Surgery and Postdischarge Acute Hospital and Ambulatory Visits. J Hosp Med. 2017 09; 12(9):723-730. PMID: 28914276.
      View in: PubMed
    5. Lee JS, Nápoles A, Mutha S, Pérez-Stable EJ, Gregorich SE, Livaudais-Toman J, Karliner LS. Hospital discharge preparedness for patients with limited English proficiency: A mixed methods study of bedside interpreter-phones. Patient Educ Couns. 2018 Jan; 101(1):25-32. PMID: 28774652.
      View in: PubMed
    6. Lee JS, Pérez-Stable EJ, Gregorich SE, Crawford MH, Green A, Livaudais-Toman J, Karliner LS. Increased Access to Professional Interpreters in the Hospital Improves Informed Consent for Patients with Limited English Proficiency. J Gen Intern Med. 2017 Aug; 32(8):863-870. PMID: 28185201.
      View in: PubMed
    7. Lee JS, Giesler DL, Fine MJ. Duration of Antibiotic Therapy for Community-Acquired Pneumonia in the Era of Personalized Medicine. JAMA. 2016 12 20; 316(23):2544-2545. PMID: 27997641.
      View in: PubMed
    8. Lee JS, Giesler DL, Fine MJ. Management of Community-Acquired Pneumonia--Reply. JAMA. 2016 Jul 12; 316(2):222-3. PMID: 27404195.
      View in: PubMed
    9. Lee JS, Giesler DL, Gellad WF, Fine MJ. Antibiotic Therapy for Adults Hospitalized With Community-Acquired Pneumonia: A Systematic Review. JAMA. 2016 Feb 09; 315(6):593-602. PMID: 26864413.
      View in: PubMed
    10. Trivedi AN, Nsa W, Hausmann LR, Lee JS, Ma A, Bratzler DW, Mor MK, Baus K, Larbi F, Fine MJ. Quality and equity of care in U.S. hospitals. N Engl J Med. 2014 Dec 11; 371(24):2298-308. PMID: 25494269.
      View in: PubMed
    11. Lee JS, Fine MJ. The debate on antibiotic therapy for patients hospitalized for pneumonia: where should we go from here? JAMA Intern Med. 2014 Dec; 174(12):1901-3. PMID: 25285980.
      View in: PubMed
    12. Lee JS, Nsa W, Hausmann LR, Trivedi AN, Bratzler DW, Auden D, Mor MK, Baus K, Larbi FM, Fine MJ. Quality of care for elderly patients hospitalized for pneumonia in the United States, 2006 to 2010. JAMA Intern Med. 2014 Nov; 174(11):1806-14. PMID: 25201438.
      View in: PubMed
    13. Lee JS, Primack BA, Mor MK, Stone RA, Obrosky DS, Yealy DM, Fine MJ. Processes of care and outcomes for community-acquired pneumonia. Am J Med. 2011 Dec; 124(12):1175.e9-17. PMID: 22000624.
      View in: PubMed
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