Lorenzo Calviello, PhD

Title(s)Postdoctoral Scholar, Cell and Tissue Biology
SchoolSchool of Dentistry
Address513 Parnassus Ave, HSW
San Francisco CA 94143
Phone--
ORCID ORCID Icon0000-0002-5600-0988 Additional info
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    Collapse Biography 
    Collapse Education and Training
    University of Pisa, Pisa, ItalyBSc and MSc07/2012Molecular Cell Biology
    Humboldt University, Berlin, GermanyPhD12/2017Computational Biology

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. DDX3X and DDX3Y are redundant in protein synthesis. RNA. 2021 Sep 17. Venkataramanan S, Gadek M, Calviello L, Wilkins K, Floor S. PMID: 34535544.
      View in: PubMed   Mentions:    Fields:    
    2. DDX3 depletion represses translation of mRNAs with complex 5' UTRs. Nucleic Acids Res. 2021 05 21; 49(9):5336-5350. Calviello L, Venkataramanan S, Rogowski KJ, Wyler E, Wilkins K, Tejura M, Thai B, Krol J, Filipowicz W, Landthaler M, Floor SN. PMID: 33905506; PMCID: PMC8136831.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    3. Control of ribosomal protein synthesis by the Microprocessor complex. Sci Signal. 2021 Feb 23; 14(671). Jiang X, Prabhakar A, Van der Voorn SM, Ghatpande P, Celona B, Venkataramanan S, Calviello L, Lin C, Wang W, Black BL, Floor SN, Lagna G, Hata A. PMID: 33622983; PMCID: PMC8012103.
      View in: PubMed   Mentions:    Fields:    
    4. Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquant. Methods Mol Biol. 2021; 2252:331-346. Harnett D, Meerdink E, Calviello L, Sydow D, Ohler U. PMID: 33765284.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    5. Quantification of translation uncovers the functions of the alternative transcriptome. Nat Struct Mol Biol. 2020 08; 27(8):717-725. Calviello L, Hirsekorn A, Ohler U. PMID: 32601440.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    6. A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature. 2020 07; 583(7816):459-468. Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, White KM, O'Meara MJ, Rezelj VV, Guo JZ, Swaney DL, Tummino TA, Hüttenhain R, Kaake RM, Richards AL, Tutuncuoglu B, Foussard H, Batra J, Haas K, Modak M, Kim M, Haas P, Polacco BJ, Braberg H, Fabius JM, Eckhardt M, Soucheray M, Bennett MJ, Cakir M, McGregor MJ, Li Q, Meyer B, Roesch F, Vallet T, Mac Kain A, Miorin L, Moreno E, Naing ZZC, Zhou Y, Peng S, Shi Y, Zhang Z, Shen W, Kirby IT, Melnyk JE, Chorba JS, Lou K, Dai SA, Barrio-Hernandez I, Memon D, Hernandez-Armenta C, Lyu J, Mathy CJP, Perica T, Pilla KB, Ganesan SJ, Saltzberg DJ, Rakesh R, Liu X, Rosenthal SB, Calviello L, Venkataramanan S, Liboy-Lugo J, Lin Y, Huang XP, Liu Y, Wankowicz SA, Bohn M, Safari M, Ugur FS, Koh C, Savar NS, Tran QD, Shengjuler D, Fletcher SJ, O'Neal MC, Cai Y, Chang JCJ, Broadhurst DJ, Klippsten S, Sharp PP, Wenzell NA, Kuzuoglu-Ozturk D, Wang HY, Trenker R, Young JM, Cavero DA, Hiatt J, Roth TL, Rathore U, Subramanian A, Noack J, Hubert M, Stroud RM, Frankel AD, Rosenberg OS, Verba KA, Agard DA, Ott M, Emerman M, Jura N, von Zastrow M, Verdin E, Ashworth A, Schwartz O, d'Enfert C, Mukherjee S, Jacobson M, Malik HS, Fujimori DG, Ideker T, Craik CS, Floor SN, Fraser JS, Gross JD, Sali A, Roth BL, Ruggero D, Taunton J, Kortemme T, Beltrao P, Vignuzzi M, García-Sastre A, Shokat KM, Shoichet BK, Krogan NJ. PMID: 32353859; PMCID: PMC7431030.
      View in: PubMed   Mentions: 1032     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    7. Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes. Nat Commun. 2020 03 10; 11(1):1293. Chong C, Müller M, Pak H, Harnett D, Huber F, Grun D, Leleu M, Auger A, Arnaud M, Stevenson BJ, Michaux J, Bilic I, Hirsekorn A, Calviello L, Simó-Riudalbas L, Planet E, Lubinski J, Bryskiewicz M, Wiznerowicz M, Xenarios I, Zhang L, Trono D, Harari A, Ohler U, Coukos G, Bassani-Sternberg M. PMID: 32157095; PMCID: PMC7064602.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    8. The Translational Landscape of the Human Heart. Cell. 2019 06 27; 178(1):242-260.e29. van Heesch S, Witte F, Schneider-Lunitz V, Schulz JF, Adami E, Faber AB, Kirchner M, Maatz H, Blachut S, Sandmann CL, Kanda M, Worth CL, Schafer S, Calviello L, Merriott R, Patone G, Hummel O, Wyler E, Obermayer B, Mücke MB, Lindberg EL, Trnka F, Memczak S, Schilling M, Felkin LE, Barton PJR, Quaife NM, Vanezis K, Diecke S, Mukai M, Mah N, Oh SJ, Kurtz A, Schramm C, Schwinge D, Sebode M, Harakalova M, Asselbergs FW, Vink A, de Weger RA, Viswanathan S, Widjaja AA, Gärtner-Rommel A, Milting H, Dos Remedios C, Knosalla C, Mertins P, Landthaler M, Vingron M, Linke WA, Seidman JG, Seidman CE, Rajewsky N, Ohler U, Cook SA, Hubner N. PMID: 31155234.
      View in: PubMed   Mentions: 108     Fields:    Translation:HumansAnimalsCells
    9. RNA localization is a key determinant of neurite-enriched proteome. Nat Commun. 2017 09 19; 8(1):583. Zappulo A, van den Bruck D, Ciolli Mattioli C, Franke V, Imami K, McShane E, Moreno-Estelles M, Calviello L, Filipchyk A, Peguero-Sanchez E, Müller T, Woehler A, Birchmeier C, Merino E, Rajewsky N, Ohler U, Mazzoni EO, Selbach M, Akalin A, Chekulaeva M. PMID: 28928394; PMCID: PMC5605627.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    10. Beyond Read-Counts: Ribo-seq Data Analysis to Understand the Functions of the Transcriptome. Trends Genet. 2017 10; 33(10):728-744. Calviello L, Ohler U. PMID: 28887026.
      View in: PubMed   Mentions: 27     Fields:    Translation:Cells
    11. Integrative classification of human coding and noncoding genes through RNA metabolism profiles. Nat Struct Mol Biol. 2017 01; 24(1):86-96. Mukherjee N, Calviello L, Hirsekorn A, de Pretis S, Pelizzola M, Ohler U. PMID: 27870833.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansCells
    12. Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis. Proc Natl Acad Sci U S A. 2016 Nov 08; 113(45):E7126-E7135. Hsu PY, Calviello L, Wu HL, Li FW, Rothfels CJ, Ohler U, Benfey PN. PMID: 27791167; PMCID: PMC5111709.
      View in: PubMed   Mentions: 51     Fields:    
    13. On Fine Stochastic Simulations of Liposome-Encapsulated PUREsystem™. Advances in Artificial Life, Evolutionary Computation and Systems Chemistry. 2016 Jan 1; 587:146-158. Calviello CL, Lazzerini-Ospri LL, Marangoni MR. .
      View in: Publisher Site   Mentions:
    14. Detecting actively translated open reading frames in ribosome profiling data. Nat Methods. 2016 Feb; 13(2):165-70. Calviello L, Mukherjee N, Wyler E, Zauber H, Hirsekorn A, Selbach M, Landthaler M, Obermayer B, Ohler U. PMID: 26657557.
      View in: PubMed   Mentions: 131     Fields:    Translation:HumansCells
    15. Extensive identification and analysis of conserved small ORFs in animals. Genome Biol. 2015 Sep 14; 16:179. Mackowiak SD, Zauber H, Bielow C, Thiel D, Kutz K, Calviello L, Mastrobuoni G, Rajewsky N, Kempa S, Selbach M, Obermayer B. PMID: 26364619; PMCID: PMC4568590.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansAnimalsCells
    16. Quasi-cellular systems: stochastic simulation analysis at nanoscale range. BMC Bioinformatics. 2013; 14 Suppl 7:S7. Calviello L, Stano P, Mavelli F, Luisi PL, Marangoni R. PMID: 23815522; PMCID: PMC3633058.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    17. Quasi-cellular systems: stochastic simulation analysis at nanoscale range. EMBnet journal. 2012 Apr 29; 18(A):26. Calviello CL, Stano SP, Mavelli MF, Luisi LP, Marangoni MR. .
      View in: Publisher Site   Mentions:
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