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Mark Pandori, PhD

TitleAssociate Clinical Professor
InstitutionUniversity of California San Francisco
DepartmentLaboratory Medicine
Address513 Parnassus Ave
San Francisco CA 94143
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Tsai CT, Robinson PV, Cortez FJ, Elma MLB, Seftel D, Pourmandi N, Pandori M, Bertozzi CR. Antibody detection by agglutination-PCR (ADAP) enables early diagnosis of HIV infection by oral fluid analysis. Proc Natl Acad Sci U S A. 2018 Feb 06; 115(6):1250-1255. PMID: 29358368.
      View in: PubMed
    2. Allan-Blitz LT, Humphries RM, Hemarajata P, Bhatti A, Pandori M, Siedner MJ, Klausner JD. Implementation of a Rapid Genotypic Assay to Promote Targeted Ciprofloxacin Therapy of Neisseria gonorrhoeae in a Large Health System. Clin Infect Dis. 2017 05 01; 64(9):1268-1270. PMID: 28034887.
      View in: PubMed
    3. Levy V, Pandori M, Berrada ZL, Relucio KI, Lopez TP, Samuel MC, Park IU. A Case of Persistent and Possibly Treatment Resistant Pharyngeal Gonorrhea. Sex Transm Dis. 2016 Apr; 43(4):258-9. PMID: 26967304.
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    4. Peters PJ, Westheimer E, Cohen S, Hightow-Weidman LB, Moss N, Tsoi B, Hall L, Fann C, Daskalakis DC, Beagle S, Patel P, Radix A, Foust E, Kohn RP, Marmorino J, Pandori M, Fu J, Samandari T, Gay CL. Screening Yield of HIV Antigen/Antibody Combination and Pooled HIV RNA Testing for Acute HIV Infection in a High-Prevalence Population. JAMA. 2016 Feb 16; 315(7):682-90. PMID: 26881371.
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    5. Espinosa K, Park JA, Gerrity JJ, Buono S, Shearer A, Dick C, Mak ML, Teramoto K, Klausner JD, Pandori M, Hess D. Fluoroquinolone resistance in Neisseria gonorrhoeae after cessation of ciprofloxacin usage in San Francisco: using molecular typing to investigate strain turnover. Sex Transm Dis. 2015 Feb; 42(2):57-63. PMID: 25585061.
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    6. Buono SA, Watson TD, Borenstein LA, Klausner JD, Pandori M, Godwin HA. Stemming the tide of drug-resistant Neisseria gonorrhoeae: the need for an individualized approach to treatment. J Antimicrob Chemother. 2015 Feb; 70(2):374-81. PMID: 25331059.
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    7. Nguyen D, Gose S, Castro L, Chung K, Bernstein K, Samuel M, Bauer H, Pandori M. Neisseria gonorrhoeae strain with reduced susceptibilities to extended-spectrum cephalosporins. Emerg Infect Dis. 2014 Jul; 20(7):1211-3. PMID: 24964277; PMCID: PMC4073858.
    8. Davis JL, Kawamura LM, Chaisson LH, Grinsdale J, Benhammou J, Ho C, Babst A, Banouvong H, Metcalfe JZ, Pandori M, Hopewell PC, Cattamanchi A. Impact of GeneXpert MTB/RIF on patients and tuberculosis programs in a low-burden setting. a hypothetical trial. Am J Respir Crit Care Med. 2014 Jun 15; 189(12):1551-9. PMID: 24869625; PMCID: PMC4226012.
    9. Marcotte T, Lee Y, Pandori M, Jain V, Cohen SE. Lymphogranuloma venereum causing a persistent genital ulcer. Sex Transm Dis. 2014 Apr; 41(4):280-2. PMID: 24622642.
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    10. Pilcher CD, Louie B, Facente S, Keating S, Hackett J, Vallari A, Hall C, Dowling T, Busch MP, Klausner JD, Hecht FM, Liska S, Pandori M. Performance of rapid point-of-care and laboratory tests for acute and established HIV infection in San Francisco. PLoS One. 2013; 8(12):e80629. PMID: 24349007.
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    11. Gose S, Nguyen D, Lowenberg D, Samuel M, Bauer H, Pandori M. Neisseria gonorrhoeae and extended-spectrum cephalosporins in California: surveillance and molecular detection of mosaic penA. BMC Infect Dis. 2013 Dec 04; 13:570. PMID: 24305088; PMCID: PMC4235022.
    12. Pandori M, Westheimer E, Gay C, Moss N, Fu J, Hightow-Weidman LB, Craw J, Hall L, Giancotti FR, Mak ML, Madayag C, Tsoi B, Louie B, Patel P, Owen SM, Peters PJ. The Multispot rapid HIV-1/HIV-2 differentiation assay is comparable with the Western blot and an immunofluorescence assay at confirming HIV infection in a prospective study in three regions of the United States. J Clin Virol. 2013 Dec; 58 Suppl 1:e92-6. PMID: 24342485.
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    13. Gose S, Kong CJ, Lee Y, Samuel MC, Bauer HM, Dixon P, Soge OO, Lei J, Pandori M. Comparison of Neisseria gonorrhoeae MICs obtained by Etest and agar dilution for ceftriaxone, cefpodoxime, cefixime and azithromycin. J Microbiol Methods. 2013 Dec; 95(3):379-80. PMID: 24455772.
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    14. Gose S, Kong CJ, Lee Y, Samuel MC, Bauer HM, Dixon P, Soge OO, Lei J, Pandori M. Comparison of Neisseria gonorrhoeae MICs Obtained by Etest and Agar Dilution for Ceftriaxone, Cefpodoxime, Cefixime and Azithromycin. J Microbiol Methods. 2013 Oct 24. PMID: 24513503.
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    15. Bernstein KT, Marcus JL, Barry PM, Pandori M, Buono S, Hess D, Philip SS. Characteristics of males infected with common Neisseria gonorrhoeae sequence types in the Gonococcal Isolate Surveillance Project, San Francisco, California, 2009. Am J Epidemiol. 2013 Oct 15; 178(8):1289-95. PMID: 24049157.
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    16. Das M, Raymond HF, Chu P, Nieves-Rivera I, Pandori M, Louie B, Rauch L, Scheer S, Vittinghoff E, McFarland W. Measuring the unknown: calculating community viral load among HIV-infected MSM unaware of their HIV status in San Francisco from National HIV Behavioral Surveillance, 2004-2011. J Acquir Immune Defic Syndr. 2013 Jun 01; 63(2):e84-6. PMID: 23666144; PMCID: PMC3654408.
    17. Raymond HF, Chen YH, Ick T, Scheer S, Bernstein K, Liska S, Louie B, Pandori M, McFarland W. A new trend in the HIV epidemic among men who have sex with men, San Francisco, 2004-2011. J Acquir Immune Defic Syndr. 2013 Apr 15; 62(5):584-9. PMID: 23334505.
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    18. Branson BM, Pandori M. 2012 HIV Diagnostics Conference: the molecular diagnostics perspective. Expert Rev Mol Diagn. 2013 Apr; 13(3):243-5. PMID: 23570401.
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    19. Christopoulos KA, Zetola NM, Klausner JD, Haller B, Louie B, Hare CB, Pandori M, Nassos P, Roemer M, Pilcher CD. Leveraging a rapid, round-the-clock HIV testing system to screen for acute HIV infection in a large urban public medical center. J Acquir Immune Defic Syndr. 2013 Feb 01; 62(2):e30-8. PMID: 23117503; PMCID: PMC3548997.
    20. Raymond HF, Chu P, Nieves-Rivera I, Louie B, McFarland W, Pandori M. Hepatitis C infection among men who have sex with men, San Francisco, 2011. Sex Transm Dis. 2012 Dec; 39(12):985-6. PMID: 23191955.
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    21. Hess D, Wu A, Golparian D, Esmaili S, Pandori W, Sena E, Klausner JD, Barry P, Unemo M, Pandori M. Genome sequencing of a Neisseria gonorrhoeae isolate of a successful international clone with decreased susceptibility and resistance to extended-spectrum cephalosporins. Antimicrob Agents Chemother. 2012 Nov; 56(11):5633-41. PMID: 22908152; PMCID: PMC3486552.
    22. Buono S, Wu A, Hess DC, Carlson JS, Rauch L, Philip SS, Barry P, Bernstein K, Klausner JD, Pandori M. Using the Neisseria gonorrhoeae multiantigen sequence-typing method to assess strain diversity and antibiotic resistance in San Francisco, California. Microb Drug Resist. 2012 Oct; 18(5):510-7. PMID: 22686196.
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    23. Park J, Marcus JL, Pandori M, Snell A, Philip SS, Bernstein KT. Sentinel surveillance for pharyngeal chlamydia and gonorrhea among men who have sex with men--San Francisco, 2010. Sex Transm Dis. 2012 Jun; 39(6):482-4. PMID: 22592836.
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    24. Wong EH, Klausner JD, Caguin-Grygiel G, Madayag C, Barber KO, Qiu JS, Liska S, Pandori M. Evaluation of an IgM/IgG sensitive enzyme immunoassay and the utility of index values for the screening of syphilis infection in a high-risk population. Sex Transm Dis. 2011 Jun; 38(6):528-32. PMID: 21233789.
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    25. Yukl SA, Li P, Fujimoto K, Lampiris H, Lu CM, Hare CB, Deeks SG, Liegler T, Pandori M, Havlir DV, Wong JK. Modification of the Abbott RealTime assay for detection of HIV-1 plasma RNA viral loads less than one copy per milliliter. J Virol Methods. 2011 Aug; 175(2):261-5. PMID: 21536073; PMCID: PMC3827908.
    26. Wu A, Buono S, Katz KA, Pandori M. Clinical Neisseria gonorrhoeae isolates in the United States with resistance to azithromycin possess mutations in all 23S rRNA alleles and the mtrR coding region. Microb Drug Resist. 2011 Sep; 17(3):425-7. PMID: 21492017.
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    27. Modongo C, Zetola NM, Pandori M, Klausner JD. Has the answer to diagnosing TB in resource-limited settings been found? MLO Med Lab Obs. 2011 Mar; 43(3):25. PMID: 21446578; PMCID: PMC3786214.
    28. Marlowe EM, Novak-Weekley SM, Cumpio J, Sharp SE, Momeny MA, Babst A, Carlson JS, Kawamura M, Pandori M. Evaluation of the Cepheid Xpert MTB/RIF assay for direct detection of Mycobacterium tuberculosis complex in respiratory specimens. J Clin Microbiol. 2011 Apr; 49(4):1621-3. PMID: 21289151; PMCID: PMC3122817.
    29. Yukl SA, Shergill AK, McQuaid K, Gianella S, Lampiris H, Hare CB, Pandori M, Sinclair E, G√ľnthard HF, Fischer M, Wong JK, Havlir DV. Effect of raltegravir-containing intensification on HIV burden and T-cell activation in multiple gut sites of HIV-positive adults on suppressive antiretroviral therapy. AIDS. 2010 Oct 23; 24(16):2451-60. PMID: 20827162; PMCID: PMC2997807.
    30. Miller S, Moayeri M, Wright C, Castro L, Pandori M. Comparison of GeneXpert FluA PCR to direct fluorescent antibody and respiratory viral panel PCR assays for detection of 2009 novel H1N1 influenza virus. J Clin Microbiol. 2010 Dec; 48(12):4684-5. PMID: 20962141; PMCID: PMC3008449.
    31. Yukl SA, Gianella S, Sinclair E, Epling L, Li Q, Duan L, Choi AL, Girling V, Ho T, Li P, Fujimoto K, Lampiris H, Hare CB, Pandori M, Haase AT, G√ľnthard HF, Fischer M, Shergill AK, McQuaid K, Havlir DV, Wong JK. Differences in HIV burden and immune activation within the gut of HIV-positive patients receiving suppressive antiretroviral therapy. J Infect Dis. 2010 Nov 15; 202(10):1553-61. PMID: 20939732; PMCID: PMC2997806.
    32. Pandori M, Branson BM. 2010 HIV Diagnostics Conference. Expert Rev Anti Infect Ther. 2010 Jun; 8(6):631-3. PMID: 20521890.
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    33. Freeman AH, Katz KA, Pandori M, Rauch LM, Kohn RP, Liska S, Bernstein KT, Klausner JD. Prevalence and correlates of Trichomonas vaginalis among incarcerated persons assessed using a highly sensitive molecular assay. Sex Transm Dis. 2010 Mar; 37(3):165-8. PMID: 20023598.
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    34. Pandori M, Barry PM, Wu A, Ren A, Whittington WL, Liska S, Klausner JD. Mosaic penicillin-binding protein 2 in Neisseria gonorrhoeae isolates collected in 2008 in San Francisco, California. Antimicrob Agents Chemother. 2009 Sep; 53(9):4032-4. PMID: 19546370; PMCID: PMC2737862.
    35. Pandori M, Hackett J, Louie B, Vallari A, Dowling T, Liska S, Klausner JD. Assessment of the ability of a fourth-generation immunoassay for human immunodeficiency virus (HIV) antibody and p24 antigen to detect both acute and recent HIV infections in a high-risk setting. J Clin Microbiol. 2009 Aug; 47(8):2639-42. PMID: 19535523; PMCID: PMC2725691.
    36. Louie B, Lei J, Liska S, Dowling T, Pandori M. Assessment of sensitivity and specificity of first, second, and third generation EIA for the detection of antibodies to HIV-1 in oral fluid. J Virol Methods. 2009 Jul; 159(1):119-21. PMID: 19442855.
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    37. Ren A, Louie B, Rauch L, Castro L, Liska S, Klausner JD, Pandori M. Screening and confirmation of human immunodeficiency virus type 1 infection solely by detection of RNA. J Med Microbiol. 2008 Oct; 57(Pt 10):1228-33. PMID: 18809550.
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    38. Louie B, Wong E, Klausner JD, Liska S, Hecht F, Dowling T, Obeso M, Phillips SS, Pandori M. Assessment of rapid tests for detection of human immunodeficiency virus-specific antibodies in recently infected individuals. J Clin Microbiol. 2008 Apr; 46(4):1494-7. PMID: 18234875; PMCID: PMC2292942.
    39. Siedner MJ, Pandori M, Leon SR, Barry PM, Espinosa BJ, Hall ER, Coates TJ, Klausner JD. Detection of quinolone-resistant Neisseria gonorrhoeae in urogenital specimens with the use of real-time polymerase chain reaction. Int J STD AIDS. 2008 Jan; 19(1):69-71. PMID: 18275657.
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    40. Pandori M, Gordones C, Castro L, Engelman J, Siedner M, Lukehart S, Klausner J. Detection of azithromycin resistance in Treponema pallidum by real-time PCR. Antimicrob Agents Chemother. 2007 Sep; 51(9):3425-30. PMID: 17620374; PMCID: PMC2043243.
    41. Siedner MJ, Pandori M, Leon SR, Espinosa BJ, Hall ER, Caceres C, Coates TJ, Klausner JD. Facilitating lymphogranuloma venereum surveillance with the use of real time polymerase chain reaction. Int J STD AIDS. 2007 Jul; 18(7):506-7. PMID: 17623514.
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    42. Siedner MJ, Pandori M, Castro L, Barry P, Whittington WL, Liska S, Klausner JD. Real-time PCR assay for detection of quinolone-resistant Neisseria gonorrhoeae in urine samples. J Clin Microbiol. 2007 Apr; 45(4):1250-4. PMID: 17267635; PMCID: PMC1865802.
    43. Pandori M, Lei J, Wong EH, Klausner J, Liska S. Real-Time PCR for detection of herpes simplex virus without nucleic acid extraction. BMC Infect Dis. 2006 Jun 24; 6:104. PMID: 16796763; PMCID: PMC1533833.
    44. Louie B, Pandori M, Wong E, Klausner JD, Liska S. Use of an acute seroconversion panel to evaluate a third-generation enzyme-linked immunoassay for detection of human immunodeficiency virus-specific antibodies relative to multiple other assays. J Clin Microbiol. 2006 May; 44(5):1856-8. PMID: 16672422; PMCID: PMC1479167.
    45. Hobson DA, Pandori M, Sano T. In situ transduction of target cells on solid surfaces by immobilized viral vectors. BMC Biotechnol. 2003 May 09; 3:4. PMID: 12740047; PMCID: PMC156648.
    46. Pandori M, Hobson D, Sano T. Adenovirus-microbead conjugates possess enhanced infectivity: a new strategy for localized gene delivery. Virology. 2002 Aug 01; 299(2):204-12. PMID: 12202223.
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    47. Pandori M, Hobson DA, Olejnik J, Krzymanska-Olejnik E, Rothschild KJ, Palmer AA, Phillips TJ, Sano T. Photochemical control of the infectivity of adenoviral vectors using a novel photocleavable biotinylation reagent. Chem Biol. 2002 May; 9(5):567-73. PMID: 12031663.
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    48. Farlow SJ, Wang RJ, Pandori M, Sano T. A chimera of a gelatinase inhibitor peptide with streptavidin as a bifunctional tumor targeting reagent. FEBS Lett. 2002 Apr 10; 516(1-3):197-200. PMID: 11959132.
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