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Mark Ryder, DMD

Title(s)Professor, Orofacial Sciences
SchoolSchool of Dentistry
Phone415-476-1699
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Moscicki AB, Yao TJ, Russell JS, Farhat S, Scott M, Magpantay L, Halec G, Shiboski CH, Ryder MI. Biomarkers of oral inflammation in perinatally HIV-infected and perinatally HIV-exposed, uninfected youth. J Clin Periodontol. 2019 Nov; 46(11):1072-1082. PMID: 31385616.
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    2. Mike Detke, Casey Lynch, Leslie Holsinger, Shirin Kapur, Dave Hennings, Debasish Raha, Florian Ermini, Ursula Haditsch, Mark Ryder, Ira J. Goodman, Stephen G. Thein, Steve Dominy. INITIATION OF THE PHASE 2/3 GAIN TRIAL OF COR388, A NOVEL BACTERIAL VIRULENCE FACTOR INHIBITOR FOR THE TREATMENT OF ALZHEIMER’S DISEASE (AD) BASED ON PHASE I A/B SAFETY, PK, BIOMARKER AND EFFICACY DATA. 2019 Jul 1; 15(7):p1585.
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    3. Diana Proctor, Katie Shelef, Antonio Gonzalez, Clara Long, Les Dethlefsen, Adam Burns, Peter Loomer, Gary Armitage, Mark Ryder, Meredith Millman, Rob Knight, Susan Holmes, David A. Relman. Microbial biogeography and ecology of the mouth and implications for periodontal diseases. 2019 Feb 8; 541052.
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    4. Dominy SS, Lynch C, Ermini F, Benedyk M, Marczyk A, Konradi A, Nguyen M, Haditsch U, Raha D, Griffin C, Holsinger LJ, Arastu-Kapur S, Kaba S, Lee A, Ryder MI, Potempa B, Mydel P, Hellvard A, Adamowicz K, Hasturk H, Walker GD, Reynolds EC, Faull RLM, Curtis MA, Dragunow M, Potempa J. Porphyromonas gingivalis in Alzheimer's disease brains: Evidence for disease causation and treatment with small-molecule inhibitors. Sci Adv. 2019 Jan; 5(1):eaau3333. PMID: 30746447.
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    5. Shiboski CH, Yao TJ, Russell JS, Ryder MI, Van Dyke RB, Seage GR, Moscicki AB. The association between oral disease and type of antiretroviral therapy among perinatally HIV-infected youth. AIDS. 2018 11 13; 32(17):2497-2505. PMID: 30096069.
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    6. Ryder MI, Couch ET, Chaffee BW. Personalized periodontal treatment for the tobacco- and alcohol-using patient. Periodontol 2000. 2018 10; 78(1):30-46. PMID: 30198132.
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    7. Starr JR, Huang Y, Lee KH, Murphy CM, Moscicki AB, Shiboski CH, Ryder MI, Yao TJ, Faller LL, Van Dyke RB, Paster BJ. Oral microbiota in youth with perinatally acquired HIV infection. Microbiome. 2018 05 31; 6(1):100. PMID: 29855347.
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    8. Clark D, Rajendran Y, Paydar S, Ho S, Cox D, Ryder M, Dollard J, Kao RT. Advanced platelet-rich fibrin and freeze-dried bone allograft for ridge preservation: A randomized controlled clinical trial. J Periodontol. 2018 04; 89(4):379-387. PMID: 29683498.
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    9. Proctor DM, Fukuyama JA, Loomer PM, Armitage GC, Lee SA, Davis NM, Ryder MI, Holmes SP, Relman DA. A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow. Nat Commun. 2018 02 14; 9(1):681. PMID: 29445174.
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    10. Jang AT, Chen L, Shimotake AR, Landis W, Altoe V, Aloni S, Ryder M, Ho SP. A Force on the Crown and Tug of War in the Periodontal Complex. J Dent Res. 2018 03; 97(3):241-250. PMID: 29364757.
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    11. Grubbs V, Garcia F, Jue BL, Vittinghoff E, Ryder M, Lovett D, Carrillo J, Offenbacher S, Ganz P, Bibbins-Domingo K, Powe NR. The Kidney and Periodontal Disease (KAPD) study: A pilot randomized controlled trial testing the effect of non-surgical periodontal therapy on chronic kidney disease. Contemp Clin Trials. 2017 02; 53:143-150. PMID: 28011387.
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    12. Ryder MI, Yao TJ, Russell JS, Moscicki AB, Shiboski CH. Prevalence of periodontal diseases in a multicenter cohort of perinatally HIV-infected and HIV-exposed and uninfected youth. J Clin Periodontol. 2017 01; 44(1):2-12. PMID: 27801947.
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    13. Moscicki AB, Farhat S, Yao TJ, Ryder MI, Russell JS, Van Dyke RB, Hazra R, Shiboski CH. Oral Human Papillomavirus in Youth From the Pediatric HIV/AIDS Cohort Study. Sex Transm Dis. 2016 08; 43(8):498-500. PMID: 27414680.
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    14. Moscicki AB, Yao TJ, Ryder MI, Russell JS, Dominy SS, Patel K, McKenna M, Van Dyke RB, Seage GR, Hazra R. The Burden of Oral Disease among Perinatally HIV-Infected and HIV-Exposed Uninfected Youth. PLoS One. 2016; 11(6):e0156459. PMID: 27299992.
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    15. Chaffee BW, Couch ET, Ryder MI. The tobacco-using periodontal patient: role of the dental practitioner in tobacco cessation and periodontal disease management. Periodontol 2000. 2016 Jun; 71(1):52-64. PMID: 27045430.
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    16. Ryder MI, Armitage GC. Minimally invasive periodontal therapy for general practitioners. Periodontol 2000. 2016 Jun; 71(1):7-9. PMID: 27045427.
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    17. Grandfield K, Herber RP, Chen L, Djomehri S, Tam C, Lee JH, Brown E, Woolwine WR, Curtis D, Ryder M, Schuck J, Webb S, Landis W, Ho S. Strain-guided mineralization in the bone-PDL-cementum complex of a rat periodontium. Bone Rep. 2015 Dec 01; 3:20-31. PMID: 26636129.
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    18. Ryder M. Aging Periodontium, Aging Patient: Current Concepts. J Calif Dent Assoc. 2015 Aug; 43(8):447-51. PMID: 26357815.
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    19. Lee JH, Pryce BA, Schweitzer R, Ryder MI, Ho SP. Differentiating zones at periodontal ligament-bone and periodontal ligament-cementum entheses. J Periodontal Res. 2015 Dec; 50(6):870-80. PMID: 26031604.
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    20. Jang AT, Lin JD, Choi RM, Choi EM, Seto ML, Ryder MI, Gansky SA, Curtis DA, Ho SP. Adaptive properties of human cementum and cementum dentin junction with age. J Mech Behav Biomed Mater. 2014 Nov; 39:184-96. PMID: 25133753.
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    21. Arimatsu K, Yamada H, Miyazawa H, Minagawa T, Nakajima M, Ryder MI, Gotoh K, Motooka D, Nakamura S, Iida T, Yamazaki K. Oral pathobiont induces systemic inflammation and metabolic changes associated with alteration of gut microbiota. Sci Rep. 2014 May 06; 4:4828. PMID: 24797416.
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    22. Dominy SS, Brown JN, Ryder MI, Gritsenko M, Jacobs JM, Smith RD. Proteomic analysis of saliva in HIV-positive heroin addicts reveals proteins correlated with cognition. PLoS One. 2014; 9(4):e89366. PMID: 24717448.
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    23. Ho SP, Kurylo MP, Grandfield K, Hurng J, Herber RP, Ryder MI, Altoe V, Aloni S, Feng JQ, Webb S, Marshall GW, Curtis D, Andrews JC, Pianetta P. The plastic nature of the human bone-periodontal ligament-tooth fibrous joint. Bone. 2013 Dec; 57(2):455-67. PMID: 24063947.
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    24. Lee JH, Lin JD, Fong JI, Ryder MI, Ho SP. The adaptive nature of the bone-periodontal ligament-cementum complex in a ligature-induced periodontitis rat model. Biomed Res Int. 2013; 2013:876316. PMID: 23936854.
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    25. Ryder MI, Nittayananta W, Coogan M, Greenspan D, Greenspan JS. Periodontal disease in HIV/AIDS. Periodontol 2000. 2012 Oct; 60(1):78-97. PMID: 22909108.
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    26. Lin JD, Aloni S, Altoe V, Webb SM, Ryder MI, Ho SP. Elastic discontinuity due to ectopic calcification in a human fibrous joint. Acta Biomater. 2013 Jan; 9(1):4787-95. PMID: 22917805.
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    27. Leong NL, Hurng JM, Djomehri SI, Gansky SA, Ryder MI, Ho SP. Age-related adaptation of bone-PDL-tooth complex: Rattus-Norvegicus as a model system. PLoS One. 2012; 7(4):e35980. PMID: 22558292.
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    28. Niver EL, Leong N, Greene J, Curtis D, Ryder MI, Ho SP. Reduced functional loads alter the physical characteristics of the bone-periodontal ligament-cementum complex. J Periodontal Res. 2011 Dec; 46(6):730-41. PMID: 21848615.
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    29. Hurng JM, Kurylo MP, Marshall GW, Webb SM, Ryder MI, Ho SP. Discontinuities in the human bone-PDL-cementum complex. Biomaterials. 2011 Oct; 32(29):7106-17. PMID: 21774982.
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    30. Mark I. Ryder, Ikuko Morio. Current challenges for dental education in Japan and the United States. 2011 Feb 1; 47(1):23-30.
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    31. Ho SP, Kurylo MP, Fong TK, Lee SS, Wagner HD, Ryder MI, Marshall GW. The biomechanical characteristics of the bone-periodontal ligament-cementum complex. Biomaterials. 2010 Sep; 31(25):6635-46. PMID: 20541802.
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    32. Ryder MI. Comparison of neutrophil functions in aggressive and chronic periodontitis. Periodontol 2000. 2010 Jun; 53:124-37. PMID: 20403109.
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    33. Ryder MI. Concepts, controversies, consensus, and conclusions: preface. Periodontol 2000. 2009; 50:9-12. PMID: 19388949.
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    34. Ryder MI, Sargent P, Perry D. Evolution and revolution: the curriculum reform process at UCSF. J Dent Educ. 2008 Dec; 72(12):1516-30. PMID: 19056631.
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    35. Ho SP, Yu B, Yun W, Marshall GW, Ryder MI, Marshall SJ. Structure, chemical composition and mechanical properties of human and rat cementum and its interface with root dentin. Acta Biomater. 2009 Feb; 5(2):707-18. PMID: 18829402.
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    36. Ho SP, Marshall SJ, Ryder MI, Marshall GW. The tooth attachment mechanism defined by structure, chemical composition and mechanical properties of collagen fibers in the periodontium. Biomaterials. 2007 Dec; 28(35):5238-45. PMID: 17870156.
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    37. Ryder MI. The influence of smoking on host responses in periodontal infections. Periodontol 2000. 2007; 43:267-77. PMID: 17214844.
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    38. Ryder MI, Hyun W, Loomer P, Haqq C. Alteration of gene expression profiles of peripheral mononuclear blood cells by tobacco smoke: implications for periodontal diseases. Oral Microbiol Immunol. 2004 Feb; 19(1):39-49. PMID: 14678473.
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    39. Ronderos M, Ryder MI. Risk assessment in clinical practice. Periodontol 2000. 2004; 34:120-35. PMID: 14717859.
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    40. Ryder MI, Saghizadeh M, Ding Y, Nguyen N, Soskolne A. Effects of tobacco smoke on the secretion of interleukin-1beta, tumor necrosis factor-alpha, and transforming growth factor-beta from peripheral blood mononuclear cells. Oral Microbiol Immunol. 2002 Dec; 17(6):331-6. PMID: 12485323.
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    41. Ryder MI. An update on HIV and periodontal disease. J Periodontol. 2002 Sep; 73(9):1071-8. PMID: 12296594.
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    42. Ryder MI, Wu TC, Kallaos SS, Hyun W. Alterations of neutrophil f-actin kinetics by tobacco smoke: implications for periodontal diseases. J Periodontal Res. 2002 Aug; 37(4):286-92. PMID: 12200973.
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    43. Johnson LR, Stoller NH, Polson A, Harrold CQ, Ryder M, Garrett S. The effects of subgingival calculus on the clinical outcomes of locally-delivered controlled-release doxycycline compared to scaling and root planing. J Clin Periodontol. 2002 Feb; 29(2):87-91. PMID: 11895536.
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    44. Wolinsky LE, Camargo PM, Polson A, Ryder M, Garrett S. The significance of prior mechanical therapy for changes of periodontal status achieved by local delivery of a doxycyclinehyclate containing gel. J Clin Periodontol. 2001 Dec; 28(12):1115-20. PMID: 11737508.
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    45. Lawrence E. Wolinsky, Paulo M. Camargo, Alan Polson, Mark Ryder, Steven Garrett. The significance of prior mechanical therapy for changes of periodontal status achieved by local delivery of a doxycyclinehyclate containing gel. 2001 Dec 1; 28(12):1115-1120.
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    46. Henke CJ, Villa KF, Aichelmann-Reidy ME, Armitage GC, Eber RM, Genco RJ, Killoy WJ, Miller DP, Page RC, Polson AM, Ryder MI, Silva SJ, Somerman MJ, Van Dyke TE, Wolff LF, Evans CJ, Finkelman RD. An economic evaluation of a chlorhexidine chip for treating chronic periodontitis: the CHIP (chlorhexidine in periodontitis) study. J Am Dent Assoc. 2001 Nov; 132(11):1557-69. PMID: 11806071.
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    47. Thomas Dyke Van, Mark Ryder, Rafael Cordero, Andrew Gallagher, Garth R Griffiths, Steven Offenbacher, Giovanni Cizza, Weichung Shih, Mary Kimberlin, Lei Meng, Antonio Lombardi. Safety of once-weekly alendronate 70 mg in the treatment of periodontal disease. 2000 Sep 1; 95(9):2503.
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    48. Ryder MI. Periodontal management of HIV-infected patients. Periodontol 2000. 2000 Jun; 23:85-93. PMID: 11276769.
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    49. Garrett S, Adams DF, Bogle G, Donly K, Drisko CH, Hallmon WW, Hancock EB, Hanes P, Hawley CE, Johnson L, Kiger R, Killoy W, Mellonig JT, Raab FJ, Ryder M, Stoller N, Polson A, Wang HL, Wolinsky LE, Yukna RA, Harrold CQ, Hill M, Johnson VB, Soouthard GL. The effect of locally delivered controlled-release doxycycline or scaling and root planing on periodontal maintenance patients over 9 months. J Periodontol. 2000 Jan; 71(1):22-30. PMID: 10695935.
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    50. Baron AC, Gansky SA, Ryder MI, Featherstone JD. Cysteine protease inhibitory activity and levels of salivary cystatins in whole saliva of periodontally diseased patients. J Periodontal Res. 1999 Nov; 34(8):437-44. PMID: 10697800.
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    51. Ryder MI, Pons B, Adams D, Beiswanger B, Blanco V, Bogle G, Donly K, Hallmon W, Hancock EB, Hanes P, Hawley C, Johnson L, Wang HL, Wolinsky L, Yukna R, Polson A, Carron G, Garrett S. Effects of smoking on local delivery of controlled-release doxycycline as compared to scaling and root planing. J Clin Periodontol. 1999 Oct; 26(10):683-91. PMID: 10522780.
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    52. Garrett S, Johnson L, Drisko CH, Adams DF, Bandt C, Beiswanger B, Bogle G, Donly K, Hallmon WW, Hancock EB, Hanes P, Hawley CE, Kiger R, Killoy W, Mellonig JT, Polson A, Raab FJ, Ryder M, Stoller NH, Wang HL, Wolinsky LE, Evans GH, Harrold CQ, Arnold RM, Southard GL. Two multi-center studies evaluating locally delivered doxycycline hyclate, placebo control, oral hygiene, and scaling and root planing in the treatment of periodontitis. J Periodontol. 1999 May; 70(5):490-503. PMID: 10368053.
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    53. Ryder MI, Fujitaki R, Lebus S, Mahboub M, Faia B, Muhaimin D, Hamada M, Hyun W. Alterations of neutrophil L-selectin and CD18 expression by tobacco smoke: implications for periodontal diseases. J Periodontal Res. 1998 Aug; 33(6):359-68. PMID: 9777587.
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    54. Ryder MI, Fujitaki R, Johnson G, Hyun W. Alterations of neutrophil oxidative burst by in vitro smoke exposure: implications for oral and systemic diseases. Ann Periodontol. 1998 Jul; 3(1):76-87. PMID: 9722692.
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    55. Mark I. Ryder, Ron Fujitaki, Scott Lebus, Mahyar Mahboub, Brandi Faia, Dawud Muhaimin, Makoto Hamada, William Hyun. Alterations of neutrophil l-selectin and CD18 expression by tobacco smoke: implications for periodontal diseases. 1998 Apr 1; 33(3):359-368.
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    56. Ryder MI. The use of polylactic acid polymers in local drug delivery and guided tissue regeneration (at Nihon University School of Dentistry on November 12, 1996). J Nihon Univ Sch Dent. 1997 Mar; 39(1):1-7. PMID: 9198328.
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    57. Ryder MI. Nicotine effects on neutrophil F-actin formation and calcium release: implications for tobacco use and pulmonary diseases. Exp Lung Res. 1994 Jul-Aug; 20(4):283-96. PMID: 7988493.
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    58. Yukihiro Numabe, Kohichi Kiyonobu, Mark I Ryder, Kyuichi Kamoi. Phagocytic function of polymorphonuclear leucocytes in the oral cavity. 1994 Jan 1; 36(3):274.
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    59. Numabe Y, Ito H, Hayashi H, Ryder MI, Kamoi K. Epithelial cell kinetics with atelocollagen membranes: a study in rats. J Periodontol. 1993 Aug; 64(8):706-12. PMID: 8410608.
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    60. Ryder MI. Periodontal considerations in the patient with HIV. Curr Opin Periodontol. 1993; 43-51. PMID: 8401846.
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    61. Chandrakasan G, Hwang CB, Ryder M, Bhatnagar RS. Keratin expression in cultures of adult human epidermal cells. Cell Mol Biol. 1991; 37(8):847-52. PMID: 1725499.
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    62. Ryder MI, Weinreb RN. Cytokeratin patterns in corneal, limbal, and conjunctival epithelium. An immunofluorescence study with PKK-1, 8.12, 8.60, and 4.62 anticytokeratin antibodies. Invest Ophthalmol Vis Sci. 1990 Nov; 31(11):2230-4. PMID: 1700772.
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    63. Weinreb RN, Ryder MI. In situ localization of cytoskeletal elements in the human trabecular meshwork and cornea. Invest Ophthalmol Vis Sci. 1990 Sep; 31(9):1839-47. PMID: 2211030.
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    64. Niederman R, Brunkhorst B, Smith S, Weinreb RN, Ryder MI. Ammonia as a potential mediator of adult human periodontal infection: inhibition of neutrophil function. Arch Oral Biol. 1990; 35 Suppl:205S-209S. PMID: 2088228.
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    65. Ryder MI, Weinreb RN, Niederman R. Microtubule-granule relationships in motile human polymorphonuclear leukocytes. Anat Rec. 1988 Jul; 221(3):679-86. PMID: 2903699.
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    66. Barak MH, Weinreb RN, Ryder MI. Quantitative assessment of cynomolgus monkey trabecular cell phagocytosis and adsorption. Curr Eye Res. 1988 May; 7(5):445-8. PMID: 3409712.
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    67. Ryder MI, Weinreb RN, Alvarado J, Polansky J. The cytoskeleton of the cultured human trabecular cell. Characterization and drug responses. Invest Ophthalmol Vis Sci. 1988 Feb; 29(2):251-60. PMID: 2892811.
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    68. Ryder MI, Winkler JR, Weinreb RN. Elevated phagocytosis, oxidative burst, and F-actin formation in PMNs from individuals with intraoral manifestations of HIV infection. J Acquir Immune Defic Syndr. 1988; 1(4):346-53. PMID: 3216315.
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    69. Robert N. Weinreb, Barry K. Lipson, Mark I. Ryder, William Freeman. Diagnostic Testing in Ophthalmic Sarcoidosis. 1987 Jan 1; 2(4):257-272.
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    70. Ryder MI, Weinreb RN. The cytoskeleton of the cynomolgus monkey trabecular cell. I. General considerations. Invest Ophthalmol Vis Sci. 1986 Sep; 27(9):1305-11. PMID: 3744722.
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    71. Weinreb RN, Ryder MI, Polansky JR. The cytoskeleton of the cynomolgus monkey trabecular cell. II. Influence of cytoskeleton-active drugs. Invest Ophthalmol Vis Sci. 1986 Sep; 27(9):1312-7. PMID: 3744723.
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    72. Weinreb RN, Sandman R, Ryder MI, Friberg TR. Angiotensin-converting enzyme activity in human aqueous humor. Arch Ophthalmol. 1985 Jan; 103(1):34-6. PMID: 2983647.
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    73. Newbrun E, Hoover CI, Ryder MI. Bactericidal action of bicarbonate ion on selected periodontal pathogenic microorganisms. J Periodontol. 1984 Nov; 55(11):658-67. PMID: 6094783.
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    74. Ryder MI, Weinreb RN, Niederman R. The organization of actin filaments in human polymorphonuclear leukocytes. Anat Rec. 1984 May; 209(1):7-20. PMID: 6539575.
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    75. Armitage GC, Ryder MI, Wilcox SE. Cemental changes in teeth with heavily infected root canals. J Endod. 1983 Apr; 9(4):127-30. PMID: 6574197.
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    76. Niederman R, Ryder MI, Horton JE, Sullivan T, Peters L, Hartwig J, Stossel TP. The cortical actin networks of migrating human PMNs. J Periodontal Res. 1982 Sep; 17(5):487-91. PMID: 6218279.
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    77. Ryder MI, Niederman R, Taggart EJ. The cytoskeleton of human polymorphonuclear leukocytes: phagocytosis and degranulation. Anat Rec. 1982 Jul; 203(3):317-27. PMID: 6890321.
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    78. Ryder MI, Jenkins SD, Horton JE. The adherence to bone by cytoplasmic elements of osteoclast. J Dent Res. 1981 Jul; 60(7):1349-55. PMID: 6940873.
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    79. Ryder MI. Histological and ultrastructural characteristics of the periodontal syndrome in the rice rat. IV. The effects of dietary antibiotics on the histological and ultrastructural characteristics of periodontal syndrome susceptible rats. J Periodontal Res. 1981 Jan; 16(1):39-50. PMID: 6453971.
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    80. Ryder MI. Histological and ultrastructural characteristics of the periodontal syndrome in the rice rat. III. Ultrastructural observations on changes in the transseptal fiber area and alveolar crest. J Periodontal Res. 1980 Nov; 15(6):585-98. PMID: 6461740.
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    81. Ryder MI. Histological and ultrastructural characteristics of the periodontal syndrome in the rice rat. II. Ultrastructural observations on changes in the gingival sulcus, gingival epithelium and lamina propria. J Periodontal Res. 1980 Nov; 15(6):574-84. PMID: 6461739.
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    82. Ryder MI. Histological and ultrastructural characteristics of the periodontal syndrome in the rice rat. I. General light microscopic observations and ultrastructural observations of initial inflammatory changes. J Periodontal Res. 1980 Sep; 15(5):502-15. PMID: 6449583.
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