Nadav Rappoport, PhD

TitlePostdoctoral Scholar
SchoolUCSF School of Medicine
DepartmentComputational Health Scienc
Address550 16th Street
San Francisco CA 94158
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    1. Rappoport N, Linial M. Trends in genome dynamics among major orders of insects revealed through variations in protein families. BMC Genomics. 2015; 16:583. PMID: 26251035; PMCID: PMC4528696.
    2. Rappoport N, Linial M. ProtoBug: functional families from the complete proteomes of insects. Database (Oxford). 2015; 2015:bau122. PMID: 25911153; PMCID: PMC4408594.
    3. Rappoport N, Stern A, Linial N, Linial M. Entropy-driven partitioning of the hierarchical protein space. Bioinformatics. 2014 Sep 1; 30(17):i624-30. PMID: 25161256; PMCID: PMC4147929.
    4. Karsenty S, Rappoport N, Ofer D, Zair A, Linial M. NeuroPID: a classifier of neuropeptide precursors. Nucleic Acids Res. 2014 Jul; 42(Web Server issue):W182-6. PMID: 24792159; PMCID: PMC4086121.
    5. Rappoport N, Linial N, Linial M. ProtoNet: charting the expanding universe of protein sequences. Nat Biotechnol. 2013 Apr; 31(4):290-2. PMID: 23563419.
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    6. Rappoport N, Linial M. Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex. BMC Bioinformatics. 2013; 14 Suppl 3:S11. PMID: 23514195; PMCID: PMC3584848.
    7. Rappoport N, Linial M. Viral proteins acquired from a host converge to simplified domain architectures. PLoS Comput Biol. 2012 Feb; 8(2):e1002364. PMID: 22319434; PMCID: PMC3271019.
    8. Rappoport N, Karsenty S, Stern A, Linial N, Linial M. ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree. Nucleic Acids Res. 2012 Jan; 40(Database issue):D313-20. PMID: 22121228; PMCID: PMC3245180.
    9. Rappoport N, Fromer M, Schweiger R, Linial M. PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations. Nucleic Acids Res. 2010 Jul; 38(Web Server issue):W84-9. PMID: 20444873; PMCID: PMC2896089.
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