Nadav Rappoport, PhD

TitlePostdoctoral Scholar
SchoolUCSF School of Medicine
Address1550 Fourth St
San Francisco CA 94158
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    1. Rappoport N, Toung J, Hadley D, Wong RJ, Fujioka K, Reuter J, Abbott CW, Oh S, Hu D, Eng C, Huntsman S, Bodian DL, Niederhuber JE, Hong X, Zhang G, Sikora-Wohfeld W, Gignoux CR, Wang H, Oehlert J, Jelliffe-Pawlowski LL, Gould JB, Darmstadt GL, Wang X, Bustamante CD, Snyder MP, Ziv E, Patsopoulos NA, Muglia LJ, Burchard E, Shaw GM, O'Brodovich HM, Stevenson DK, Butte AJ, Sirota M. A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth. Sci Rep. 2018 Jan 09; 8(1):226. PMID: 29317701.
      View in: PubMed
    2. Linial M, Rappoport N, Ofer D. Overlooked Short Toxin-Like Proteins: A Shortcut to Drug Design. Toxins (Basel). 2017 Oct 29; 9(11). PMID: 29109389.
      View in: PubMed
    3. Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biol. 2016 09 07; 17(1):184. PMID: 27604469; PMCID: PMC5015320.
    4. Rappoport N, Linial M. Trends in genome dynamics among major orders of insects revealed through variations in protein families. BMC Genomics. 2015 Aug 07; 16:583. PMID: 26251035; PMCID: PMC4528696.
    5. Rappoport N, Linial M. ProtoBug: functional families from the complete proteomes of insects. Database (Oxford). 2015; 2015:bau122. PMID: 25911153; PMCID: PMC4408594.
    6. Rappoport N, Stern A, Linial N, Linial M. Entropy-driven partitioning of the hierarchical protein space. Bioinformatics. 2014 Sep 01; 30(17):i624-30. PMID: 25161256; PMCID: PMC4147929.
    7. Karsenty S, Rappoport N, Ofer D, Zair A, Linial M. NeuroPID: a classifier of neuropeptide precursors. Nucleic Acids Res. 2014 Jul; 42(Web Server issue):W182-6. PMID: 24792159; PMCID: PMC4086121.
    8. Rappoport N, Linial N, Linial M. ProtoNet: charting the expanding universe of protein sequences. Nat Biotechnol. 2013 Apr; 31(4):290-2. PMID: 23563419.
      View in: PubMed
    9. Rappoport N, Linial M. Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex. BMC Bioinformatics. 2013; 14 Suppl 3:S11. PMID: 23514195; PMCID: PMC3584848.
    10. Rappoport N, Linial M. Viral proteins acquired from a host converge to simplified domain architectures. PLoS Comput Biol. 2012 Feb; 8(2):e1002364. PMID: 22319434; PMCID: PMC3271019.
    11. Rappoport N, Karsenty S, Stern A, Linial N, Linial M. ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree. Nucleic Acids Res. 2012 Jan; 40(Database issue):D313-20. PMID: 22121228; PMCID: PMC3245180.
    12. Rappoport N, Fromer M, Schweiger R, Linial M. PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations. Nucleic Acids Res. 2010 Jul; 38(Web Server issue):W84-9. PMID: 20444873; PMCID: PMC2896089.
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