Neelesh Soni, PhD

Title(s)Postdoctoral Scholar, Bioengineering
SchoolSchool of Pharmacy
ORCID ORCID Icon0000-0002-9333-7491 Additional info
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    Indian Institute of Science Education and Rsearch, PuneBS-MSApplied mathematics + Computational biology
    Indian Institute of Science Education and Rsearch, PunePh.D.Computational biology and Bioinformatics
    Indian Institute of Science Education and Rsearch, PunePost-Doctoral ScholarComputational biology

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. The molecular architecture of the nuclear basket. Cell. 2024 Sep 19; 187(19):5267-5281.e13. Singh D, Soni N, Hutchings J, Echeverria I, Shaikh F, Duquette M, Suslov S, Li Z, van Eeuwen T, Molloy K, Shi Y, Wang J, Guo Q, Chait BT, Fernandez-Martinez J, Rout MP, Sali A, Villa E. PMID: 39127037; PMCID: PMC11416316.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    2. COCONUT: An analysis of coiled-coil regions in proteins. BioRxiv. 2024. Neelesh Soni and M. S. Madhusudhan. . View Publication.
    3. The Molecular Architecture of the Nuclear Basket. bioRxiv. 2024 Mar 28. Singh D, Soni N, Hutchings J, Echeverria I, Shaikh F, Duquette M, Suslov S, Li Z, van Eeuwen T, Molloy K, Shi Y, Wang J, Guo Q, Chait BT, Fernandez-Martinez J, Rout MP, Sali A, Villa E. PMID: 38586009; PMCID: PMC10996695.
      View in: PubMed   Mentions:
    4. Methods for Molecular Modelling of Protein Complexes. Methods Mol Biol. 2021; 2305:53-80. Kanitkar TR, Sen N, Nair S, Soni N, Amritkar K, Ramtirtha Y, Madhusudhan MS. PMID: 33950384.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    5. Predicting and designing therapeutics against the Nipah virus. PLoS Negl Trop Dis. 2019 12; 13(12):e0007419. Sen N, Kanitkar TR, Roy AA, Soni N, Amritkar K, Supekar S, Nair S, Singh G, Madhusudhan MS. PMID: 31830030; PMCID: PMC6907750.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    6. In silico methods for design of biological therapeutics. Methods. 2017 12 01; 131:33-65. Roy A, Nair S, Sen N, Soni N, Madhusudhan MS. PMID: 28958951.
      View in: PubMed   Mentions: 19     Fields:    
    7. Computational modeling of protein assemblies. Curr Opin Struct Biol. 2017 06; 44:179-189. Soni N, Madhusudhan MS. PMID: 28505542.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    8. High-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy. Nucleic Acids Res. 2016 Nov 02; 44(19):9017-9030. Short JM, Liu Y, Chen S, Soni N, Madhusudhan MS, Shivji MK, Venkitaraman AR. PMID: 27596592; PMCID: PMC5100573.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansCells
    9. Molecular Mechanism Underlying ATP-Induced Conformational Changes in the Nucleoprotein Filament of Mycobacterium smegmatis RecA. Biochemistry. 2016 Mar 29; 55(12):1850-62. Manjunath GP, Soni N, Vaddavalli PL, Shewale DJ, Madhusudhan MS, Muniyappa K. PMID: 26915388.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    10. Novel tetra-peptide insertion in Gag-p6 ALIX-binding motif in HIV-1 subtype C associated with protease inhibitor failure in Indian patients. AIDS. 2014 Sep 24; 28(15):2319-22. Neogi U, Rao SD, Bontell I, Verheyen J, Rao VR, Gore SC, Soni N, Shet A, Schülter E, Ekstrand ML, Wondwossen A, Kaiser R, Madhusudhan MS, Prasad VR, Sonnerborg A. PMID: 25102091; PMCID: PMC4198440.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    11. Biophysical properties of intrinsically disordered p130Cas substrate domain--implication in mechanosensing. PLoS Comput Biol. 2014 Apr; 10(4):e1003532. Hotta K, Ranganathan S, Liu R, Wu F, Machiyama H, Gao R, Hirata H, Soni N, Ohe T, Hogue CW, Madhusudhan MS, Sawada Y. PMID: 24722239; PMCID: PMC3983058.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
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