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Olivier Morin, PhD

Title(s)Associate Professor, Radiation Oncology
SchoolSchool of Medicine
Phone415-353-7175
EmailOlivier.Morin@ucsf.edu
ORCID ORCID Icon0000-0002-9240-5704 Additional info
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    Collapse Biography 
    Collapse Education and Training
    University of California, San Francisco, San FranciscoDoctorate Student2007Bioengineering
    University of California, Berkeley, BerkeleyDoctorate Student07/2007Bioengineering
    University of California, Berkeley, BerkeleyCertificate07/2007Management of New Technologies

    Collapse Overview 
    Collapse Overview
    Our research laboratory creates multi-omics prediction models for personalized cancer diagnosis and treatment. I serve as the principal investigator for the MEDomics Consortium (www.medomics.ai). Our group has active research activities in quantitative imaging, natural language processing and the creation of prognostic machine learning models. Our informatics efforts use a wealth of digital information to build point-of-care artificial intelligence tools aimed at assisting physicians in the clinic. Novel algorithms are being developed to produce interpretable multi-criteria analyses tools.

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Avanzo M, Wei L, Stancanello J, Vallières M, Rao A, Morin O, Mattonen SA, El Naqa I. Machine and deep learning methods for radiomics. Med Phys. 2020 Jun; 47(5):e185-e202. PMID: 32418336.
      View in: PubMed
    2. Zwanenburg A, Vallières M, Abdalah MA, Aerts HJWL, Andrearczyk V, Apte A, Ashrafinia S, Bakas S, Beukinga RJ, Boellaard R, Bogowicz M, Boldrini L, Buvat I, Cook GJR, Davatzikos C, Depeursinge A, Desseroit MC, Dinapoli N, Dinh CV, Echegaray S, El Naqa I, Fedorov AY, Gatta R, Gillies RJ, Goh V, Götz M, Guckenberger M, Ha SM, Hatt M, Isensee F, Lambin P, Leger S, Leijenaar RTH, Lenkowicz J, Lippert F, Losnegård A, Maier-Hein KH, Morin O, Müller H, Napel S, Nioche C, Orlhac F, Pati S, Pfaehler EAG, Rahmim A, Rao AUK, Scherer J, Siddique MM, Sijtsema NM, Socarras Fernandez J, Spezi E, Steenbakkers RJHM, Tanadini-Lang S, Thorwarth D, Troost EGC, Upadhaya T, Valentini V, van Dijk LV, van Griethuysen J, van Velden FHP, Whybra P, Richter C, Löck S. The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping. Radiology. 2020 Mar 10; 191145. PMID: 32154773.
      View in: PubMed
    3. Jordan K, Morin O, Wahl M, Amirbekian B, Chapman C, Owen J, Mukherjee P, Braunstein S, Henry R. An Open-Source Tool for Anisotropic Radiation Therapy Planning in Neuro-oncology Using DW-MRI Tractography. Front Oncol. 2019; 9:810. PMID: 31544062.
      View in: PubMed
    4. Morin O, Chen WC, Nassiri F, Susko M, Magill ST, Vasudevan HN, Wu A, Vallières M, Gennatas ED, Valdes G, Pekmezci M, Alcaide-Leon P, Choudhury A, Interian Y, Mortezavi S, Turgutlu K, Bush NAO, Solberg TD, Braunstein SE, Sneed PK, Perry A, Zadeh G, McDermott MW, Villanueva-Meyer JE, Raleigh DR. Integrated models incorporating radiologic and radiomic features predict meningioma grade, local failure, and overall survival. Neurooncol Adv. 2019 May-Dec; 1(1):vdz011. PMID: 31608329.
      View in: PubMed
    5. Ibrahim A, Vallières M, Woodruff H, Primakov S, Beheshti M, Keek S, Refaee T, Sanduleanu S, Walsh S, Morin O, Lambin P, Hustinx R, Mottaghy FM. Radiomics Analysis for Clinical Decision Support in Nuclear Medicine. Semin Nucl Med. 2019 09; 49(5):438-449. PMID: 31470936.
      View in: PubMed
    6. Kroshko A, Morin O, Archambault L. Stochastic frontier analysis as knowledge-based model to improve sparing of organs-at-risk for VMAT-treated prostate cancer. Phys Med Biol. 2019 04 08; 64(8):085007. PMID: 30818294.
      View in: PubMed
    7. Chen J, Morin O, Weethee B, Perez-Andujar A, Phillips J, Held M, Kearney V, Han DY, Cheung J, Chuang C, Valdes G, Sudhyadhom A, Solberg T. Optimizing beam models for dosimetric accuracy over a wide range of treatments. Phys Med. 2019 Feb; 58:47-53. PMID: 30824149.
      View in: PubMed
    8. Deist TM, Dankers FJWM, Valdes G, Wijsman R, Hsu IC, Oberije C, Lustberg T, van Soest J, Hoebers F, Jochems A, El Naqa I, Wee L, Morin O, Raleigh DR, Bots W, Kaanders JH, Belderbos J, Kwint M, Solberg T, Monshouwer R, Bussink J, Dekker A, Lambin P. Erratum: "Machine learning algorithms for outcome prediction in (chemo)radiotherapy: An empirical comparison of classifiers" [Med. Phys. 45 (7), 3449-3459 (2018)]. Med Phys. 2019 Feb; 46(2):1080-1087. PMID: 30730570.
      View in: PubMed
    9. Thompson RF, Valdes G, Fuller CD, Carpenter CM, Morin O, Aneja S, Lindsay WD, Aerts HJWL, Agrimson B, Deville C, Rosenthal SA, Yu JB, Thomas CR. Artificial Intelligence in Radiation Oncology Imaging. Int J Radiat Oncol Biol Phys. 2018 11 15; 102(4):1159-1161. PMID: 30353870.
      View in: PubMed
    10. Gennatas ED, Wu A, Braunstein SE, Morin O, Chen WC, Magill ST, Gopinath C, Villaneueva-Meyer JE, Perry A, McDermott MW, Solberg TD, Valdes G, Raleigh DR. Preoperative and postoperative prediction of long-term meningioma outcomes. PLoS One. 2018; 13(9):e0204161. PMID: 30235308.
      View in: PubMed
    11. Morin O, Vallières M, Jochems A, Woodruff HC, Valdes G, Braunstein SE, Wildberger JE, Villanueva-Meyer JE, Kearney V, Yom SS, Solberg TD, Lambin P. A Deep Look Into the Future of Quantitative Imaging in Oncology: A Statement of Working Principles and Proposal for Change. Int J Radiat Oncol Biol Phys. 2018 11 15; 102(4):1074-1082. PMID: 30170101.
      View in: PubMed
    12. Deist TM, Dankers FJWM, Valdes G, Wijsman R, Hsu IC, Oberije C, Lustberg T, van Soest J, Hoebers F, Jochems A, El Naqa I, Wee L, Morin O, Raleigh DR, Bots W, Kaanders JH, Belderbos J, Kwint M, Solberg T, Monshouwer R, Bussink J, Dekker A, Lambin P. Machine learning algorithms for outcome prediction in (chemo)radiotherapy: An empirical comparison of classifiers. Med Phys. 2018 Jul; 45(7):3449-3459. PMID: 29763967.
      View in: PubMed
    13. Thompson RF, Valdes G, Fuller CD, Carpenter CM, Morin O, Aneja S, Lindsay WD, Aerts HJWL, Agrimson B, Deville C, Rosenthal SA, Yu JB, Thomas CR. Artificial intelligence in radiation oncology: A specialty-wide disruptive transformation? Radiother Oncol. 2018 12; 129(3):421-426. PMID: 29907338.
      View in: PubMed
    14. Hara JH, Wu A, Villanueva-Meyer JE, Valdes G, Daggubati V, Mueller S, Solberg TD, Braunstein SE, Morin O, Raleigh DR. Clinical Applications of Quantitative 3-Dimensional MRI Analysis for Pediatric Embryonal Brain Tumors. Int J Radiat Oncol Biol Phys. 2018 11 15; 102(4):744-756. PMID: 30108003.
      View in: PubMed
    15. Thompson RF, Valdes G, Fuller CD, Carpenter CM, Morin O, Aneja S, Lindsay WD, Aerts HJWL, Agrimson B, Deville C, Rosenthal SA, Yu JB, Thomas CR. The Future of Artificial Intelligence in Radiation Oncology. Int J Radiat Oncol Biol Phys. 2018 10 01; 102(2):247-248. PMID: 30191856.
      View in: PubMed
    16. Interian Y, Rideout V, Kearney VP, Gennatas E, Morin O, Cheung J, Solberg T, Valdes G. Deep nets vs expert designed features in medical physics: An IMRT QA case study. Med Phys. 2018 Jun; 45(6):2672-2680. PMID: 29603278.
      View in: PubMed
    17. Chen WC, Magill ST, Wu A, Vasudevan HN, Morin O, Aghi MK, Theodosopoulos PV, Perry A, McDermott MW, Sneed PK, Braunstein SE, Raleigh DR. Histopathological features predictive of local control of atypical meningioma after surgery and adjuvant radiotherapy. J Neurosurg. 2018 04 06; 130(2):443-450. PMID: 29624151.
      View in: PubMed
    18. Held M, Cheung J, Perez Andujar A, Husson F, Morin O. Commissioning and Evaluation of an Electronic Portal Imaging Device-Based In-Vivo Dosimetry Software. Cureus. 2018 Feb 02; 10(2):e2139. PMID: 29632749.
      View in: PubMed
    19. Lloyd S, Morin O, Whitman I, Raleigh D, Fogh S, Menzel P. Multiple myeloma and a mischievous pacemaker: A teaching case involving irradiation of a cardiovascular implantable electronic device. Pract Radiat Oncol. 2018 Mar - Apr; 8(2):90-94. PMID: 29331513.
      View in: PubMed
    20. Anwar M, Molinaro AM, Morin O, Chang SM, Haas-Kogan DA, Nelson SJ, Lupo JM. Identifying Voxels at Risk for Progression in Glioblastoma Based on Dosimetry, Physiologic and Metabolic MRI. Radiat Res. 2017 09; 188(3):303-313. PMID: 28723274.
      View in: PubMed
    21. Cheung JP, Perez-Andujar A, Morin O. Characterization of the effect of a new commercial transmission detector on radiation therapy beams. Pract Radiat Oncol. 2017 Nov - Dec; 7(6):e559-e567. PMID: 28666901.
      View in: PubMed
    22. Togno M, Wilkens JJ, Menichelli D, Oechsner M, Perez-Andujar A, Morin O. Development and clinical evaluation of an ionization chamber array with 3.5 mm pixel pitch for quality assurance in advanced radiotherapy techniques. Med Phys. 2016 May; 43(5):2283. PMID: 27147340.
      View in: PubMed
    23. Kirby N, Chen J, Kim H, Morin O, Nie K, Pouliot J. An automated deformable image registration evaluation of confidence tool. Phys Med Biol. 2016 Apr 21; 61(8):N203-14. PMID: 27025957.
      View in: PubMed
    24. Held M, Cremers F, Sneed PK, Braunstein S, Fogh SE, Nakamura J, Barani I, Perez-Andujar A, Pouliot J, Morin O. Assessment of image quality and dose calculation accuracy on kV CBCT, MV CBCT, and MV CT images for urgent palliative radiotherapy treatments. J Appl Clin Med Phys. 2016 03 08; 17(2):279-290. PMID: 27074487.
      View in: PubMed
    25. Held M, Sneed PK, Fogh SE, Pouliot J, Morin O. Feasibility of MV CBCT-based treatment planning for urgent radiation therapy: dosimetric accuracy of MV CBCT-based dose calculations. J Appl Clin Med Phys. 2015 11 08; 16(6):458-471. PMID: 26699575.
      View in: PubMed
    26. Valdes G, Morin O, Valenciaga Y, Kirby N, Pouliot J, Chuang C. Use of TrueBeam developer mode for imaging QA. J Appl Clin Med Phys. 2015 07 08; 16(4):322–333. PMID: 26219002.
      View in: PubMed
    27. Held M, Kirby N, Morin O, Pouliot J. Dosimetric aspects of inverse-planned modulated-arc total-body irradiation. Med Phys. 2012 Aug; 39(8):5263-71. PMID: 22894451.
      View in: PubMed
    28. Morin O, Held M, Kirby N, Perez-Andujar A, Chuang C, Pouliot J. SU-E-T-556: Integration of Lung Blocks in the Inverse Planning Process of Modulated Arc Total Body Irradiation Using Cone Beam CT. Med Phys. 2012 Jun; 39(6Part18):3833. PMID: 28518517.
      View in: PubMed
    29. Chuang C, Morin O, Pouliot J. SU-E-J-96: Investigation into the Accuracy of Deformable Registration Algorithms for Use in Dose Summation: A Case Study in Combined Modalities. Med Phys. 2012 Jun; 39(6Part7):3674. PMID: 28519824.
      View in: PubMed
    30. Perez-Andujar A, Morin O, Chuang C, Pouliot J. SU-E-T-123: Understanding the Meaning of IMRT QA Passing Rates with a 2D Diode Array. Med Phys. 2012 Jun; 39(6Part11):3731. PMID: 28517152.
      View in: PubMed
    31. Kirby N, Held M, Morin O, Fogh S, Pouliot J. Inverse-planned modulated-arc total-body irradiation. Med Phys. 2012 May; 39(5):2761-4. PMID: 22559647.
      View in: PubMed
    32. Faddegon BA, Aubin M, Bani-Hashemi A, Gangadharan B, Gottschalk AR, Morin O, Sawkey D, Wu V, Yom SS. Comparison of patient megavoltage cone beam CT images acquired with an unflattened beam from a carbon target and a flattened treatment beam. Med Phys. 2010 Apr; 37(4):1737-41. PMID: 20443494.
      View in: PubMed
    33. Sawkey D, Lu M, Morin O, Aubin M, Yom SS, Gottschalk AR, Bani-Hashemi A, Faddegon BA. A diamond target for megavoltage cone-beam CT. Med Phys. 2010 Mar; 37(3):1246-53. PMID: 20384262.
      View in: PubMed
    34. Aubry JF, Cheung J, Morin O, Beaulieu L, Hsu IC, Pouliot J. Investigation of geometric distortions on magnetic resonance and cone beam computed tomography images used for planning and verification of high-dose rate brachytherapy cervical cancer treatment. Brachytherapy. 2010 Jul-Sep; 9(3):266-73. PMID: 20149759.
      View in: PubMed
    35. Morin O, Aubry JF, Aubin M, Chen J, Descovich M, Hashemi AB, Pouliot J. Physical performance and image optimization of megavoltage cone-beam CT. Med Phys. 2009 Apr; 36(4):1421-32. PMID: 19472649.
      View in: PubMed
    36. Aubry JF, Cheung J, Morin O, Gottschalk A, Beaulieu L, Pouliot J. Correction of megavoltage cone-beam CT images of the pelvic region based on phantom measurements for dose calculation purposes. J Appl Clin Med Phys. 2009 Jan 27; 10(1):2852. PMID: 19223832.
      View in: PubMed
    37. Aubry JF, Cheung J, Yom S, Gottschalk A, Aubin M, Morin O, Descovich M, Beaulieu L, Pouliot J. Sci-Thurs PM: Delivery-12: Correction and calibration of megavoltage cone-beam CT images for the calculation of the dose of the day. Med Phys. 2008 Jul; 35(7Part2):3401. PMID: 28512819.
      View in: PubMed
    38. Maltz JS, Gangadharan B, Vidal M, Paidi A, Bose S, Faddegon BA, Aubin M, Morin O, Pouliot J, Zheng Z, Svatos MM, Bani-Hashemi AR. Focused beam-stop array for the measurement of scatter in megavoltage portal and cone beam CT imaging. Med Phys. 2008 Jun; 35(6):2452-62. PMID: 18649478.
      View in: PubMed
    39. Descovich M, Morin O, Aubry JF, Aubin M, Chen J, Bani-Hashemi A, Pouliot J. Characteristics of megavoltage cone-beam digital tomosynthesis. Med Phys. 2008 Apr; 35(4):1310-6. PMID: 18491525.
      View in: PubMed
    40. Morin O, Gillis A, Descovich M, Chen J, Aubin M, Aubry JF, Chen H, Gottschalk AR, Xia P, Pouliot J. Patient dose considerations for routine megavoltage cone-beam CT imaging. Med Phys. 2007 May; 34(5):1819-27. PMID: 17555263.
      View in: PubMed
    41. Morin O, Chen J, Aubin M, Gillis A, Aubry JF, Bose S, Chen H, Descovich M, Xia P, Pouliot J. Dose calculation using megavoltage cone-beam CT. Int J Radiat Oncol Biol Phys. 2007 Mar 15; 67(4):1201-10. PMID: 17336221.
      View in: PubMed
    42. Hansen EK, Larson DA, Aubin M, Chen J, Descovich M, Gillis AM, Morin O, Xia P, Pouliot J. Image-guided radiotherapy using megavoltage cone-beam computed tomography for treatment of paraspinous tumors in the presence of orthopedic hardware. Int J Radiat Oncol Biol Phys. 2006 Oct 01; 66(2):323-6. PMID: 16965986.
      View in: PubMed
    43. Chen J, Morin O, Aubin M, Bucci MK, Chuang CF, Pouliot J. Dose-guided radiation therapy with megavoltage cone-beam CT. Br J Radiol. 2006 Sep; 79 Spec No 1:S87-98. PMID: 16980688.
      View in: PubMed
    44. Aubin M, Morin O, Chen J, Gillis A, Pickett B, Aubry JF, Akazawa C, Speight J, Roach M, Pouliot J. The use of megavoltage cone-beam CT to complement CT for target definition in pelvic radiotherapy in the presence of hip replacement. Br J Radiol. 2006 Nov; 79(947):918-21. PMID: 16916807.
      View in: PubMed
    45. Pouliot J, Morin O, Aubin M, Aubry JF, Chen J, Speight J, Roach M. [Megavoltage cone-beam CT: Recent developments and clinical applications]. Cancer Radiother. 2006 Sep; 10(5):258-68. PMID: 16861025.
      View in: PubMed
    46. Chen J, Chuang CF, Morin O, Aubin M, Pouliot J. Calibration of an amorphous-silicon flat panel portal imager for exit-beam dosimetry. Med Phys. 2006 Mar; 33(3):584-94. PMID: 16878562.
      View in: PubMed
    47. Morin O, Gillis A, Chen J, Aubin M, Bucci MK, Roach M, Pouliot J. Megavoltage cone-beam CT: system description and clinical applications. Med Dosim. 2006; 31(1):51-61. PMID: 16551529.
      View in: PubMed
    48. Pouliot J, Bani-Hashemi A, Chen J, Svatos M, Ghelmansarai F, Mitschke M, Aubin M, Xia P, Morin O, Bucci K, Roach M, Hernandez P, Zheng Z, Hristov D, Verhey L. Low-dose megavoltage cone-beam CT for radiation therapy. Int J Radiat Oncol Biol Phys. 2005 Feb 01; 61(2):552-60. PMID: 15736320.
      View in: PubMed
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