Ray Wang, PhD

TitlePostdoctoral Research Assoc
SchoolUCSF School of Medicine
DepartmentHoward Hughes Medical Instit
Address600 16th St
San Francisco CA 94158
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    1. Wang R, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F, et al. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta. Elife. 2016 Sep 26; 5. PMID: 27669148.
      View in: PubMed
    2. Verba KA, Wang R, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA. Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Science. 2016 Jun 24; 352(6293):1542-7. PMID: 27339980.
      View in: PubMed
    3. Ovchinnikov S, Park H, Kim DE, Liu Y, Wang R, Baker D. Structure prediction using sparse simulated NOE restraints with Rosetta in CASP11. Proteins. 2016 Sep; 84 Suppl 1:181-8. PMID: 26857542.
      View in: PubMed
    4. Ovchinnikov S, Kim DE, Wang R, Liu Y, DiMaio F, Baker D. Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta. Proteins. 2016 Sep; 84 Suppl 1:67-75. PMID: 26677056.
      View in: PubMed
    5. Barad BA, Echols N, Wang R, Cheng Y, DiMaio F, Adams PD, Fraser JS. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nat Methods. 2015 Oct; 12(10):943-6. PMID: 26280328; PMCID: PMC4589481.
    6. Blok NB, Tan D, Wang R, Penczek PA, Baker D, DiMaio F, Rapoport TA, Walz T. Unique double-ring structure of the peroxisomal Pex1/Pex6 ATPase complex revealed by cryo-electron microscopy. Proc Natl Acad Sci U S A. 2015 Jul 28; 112(30):E4017-25. PMID: 26170309; PMCID: PMC4522808.
    7. Kudryashev M, Wang R, Brackmann M, Scherer S, Maier T, Baker D, DiMaio F, Stahlberg H, Egelman EH, Basler M. Structure of the type VI secretion system contractile sheath. Cell. 2015 Feb 26; 160(5):952-62. PMID: 25723169; PMCID: PMC4359589.
    8. Wang R, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nat Methods. 2015 Apr; 12(4):335-8. PMID: 25707029; PMCID: PMC4435692.
    9. Song Y, DiMaio F, Wang R, Kim D, Miles C, Brunette T, Thompson J, Baker D. High-resolution comparative modeling with RosettaCM. Structure. 2013 Oct 08; 21(10):1735-42. PMID: 24035711; PMCID: PMC3811137.
    10. Kim DE, Dimaio F, Yu-Ruei Wang R, Song Y, Baker D. One contact for every twelve residues allows robust and accurate topology-level protein structure modeling. Proteins. 2014 Feb; 82 Suppl 2:208-18. PMID: 23900763; PMCID: PMC4128384.
    11. Wang R, Han Y, Krassovsky K, Sheffler W, Tyka M, Baker D. Modeling disordered regions in proteins using Rosetta. PLoS One. 2011; 6(7):e22060. PMID: 21829444; PMCID: PMC3146542.
    12. Huang WL, Wang YR, Ko TP, Chia CY, Huang KF, Wang R. Crystal structure and functional analysis of the glutaminyl cyclase from Xanthomonas campestris. J Mol Biol. 2010 Aug 20; 401(3):374-88. PMID: 20558177.
      View in: PubMed
    13. Huang KF, Wang YR, Chang EC, Chou TL, Wang R. A conserved hydrogen-bond network in the catalytic centre of animal glutaminyl cyclases is critical for catalysis. Biochem J. 2008 Apr 01; 411(1):181-90. PMID: 18072935.
      View in: PubMed
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