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Ray Wang, PhD

Title(s)Associate Specialist, Biochemistry and Biophysics
SchoolSchool of Medicine
Address600 16th Street
San Francisco CA 94158
Phone--
ORCID ORCID Icon0000-0001-5025-9596 Additional info
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    Email: wangyr@msg.ucsf.edu

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Structural basis of mitochondrial receptor binding and constriction by DRP1. Nature. 2018 06; 558(7710):401-405. Kalia R, Wang RY, Yusuf A, Thomas PV, Agard DA, Shaw JM, Frost A. PMID: 29899447.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    2. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta. Elife. 2016 09 26; 5. Wang RY, Song Y, Barad BA, Cheng Y, Fraser JS, DiMaio F. PMID: 27669148.
      View in: PubMed   Mentions: 53     Fields:    
    3. Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Science. 2016 Jun 24; 352(6293):1542-7. Verba KA, Wang RY, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA. PMID: 27339980.
      View in: PubMed   Mentions: 71     Fields:    Translation:HumansAnimalsCells
    4. Structure prediction using sparse simulated NOE restraints with Rosetta in CASP11. Proteins. 2016 09; 84 Suppl 1:181-8. Ovchinnikov S, Park H, Kim DE, Liu Y, Wang RY, Baker D. PMID: 26857542.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    5. Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta. Proteins. 2016 09; 84 Suppl 1:67-75. Ovchinnikov S, Kim DE, Wang RY, Liu Y, DiMaio F, Baker D. PMID: 26677056.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    6. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nat Methods. 2015 Oct; 12(10):943-6. Barad BA, Echols N, Wang RY, Cheng Y, DiMaio F, Adams PD, Fraser JS. PMID: 26280328.
      View in: PubMed   Mentions: 143     Fields:    Translation:Cells
    7. Unique double-ring structure of the peroxisomal Pex1/Pex6 ATPase complex revealed by cryo-electron microscopy. Proc Natl Acad Sci U S A. 2015 Jul 28; 112(30):E4017-25. Blok NB, Tan D, Wang RY, Penczek PA, Baker D, DiMaio F, Rapoport TA, Walz T. PMID: 26170309.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    8. Structure of the type VI secretion system contractile sheath. Cell. 2015 Feb 26; 160(5):952-962. Kudryashev M, Wang RY, Brackmann M, Scherer S, Maier T, Baker D, DiMaio F, Stahlberg H, Egelman EH, Basler M. PMID: 25723169.
      View in: PubMed   Mentions: 71     Fields:    Translation:Cells
    9. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nat Methods. 2015 Apr; 12(4):335-8. Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. PMID: 25707029.
      View in: PubMed   Mentions: 58     Fields:    Translation:Cells
    10. High-resolution comparative modeling with RosettaCM. Structure. 2013 Oct 08; 21(10):1735-42. Song Y, DiMaio F, Wang RY, Kim D, Miles C, Brunette T, Thompson J, Baker D. PMID: 24035711.
      View in: PubMed   Mentions: 203     Fields:    Translation:Cells
    11. One contact for every twelve residues allows robust and accurate topology-level protein structure modeling. Proteins. 2014 Feb; 82 Suppl 2:208-18. Kim DE, Dimaio F, Yu-Ruei Wang R, Song Y, Baker D. PMID: 23900763.
      View in: PubMed   Mentions: 30     Fields:    Translation:Cells
    12. Modeling disordered regions in proteins using Rosetta. PLoS One. 2011; 6(7):e22060. Wang RY, Han Y, Krassovsky K, Sheffler W, Tyka M, Baker D. PMID: 21829444.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    13. Crystal structure and functional analysis of the glutaminyl cyclase from Xanthomonas campestris. J Mol Biol. 2010 Aug 20; 401(3):374-88. Huang WL, Wang YR, Ko TP, Chia CY, Huang KF, Wang AH. PMID: 20558177.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    14. A conserved hydrogen-bond network in the catalytic centre of animal glutaminyl cyclases is critical for catalysis. Biochem J. 2008 Apr 01; 411(1):181-90. Huang KF, Wang YR, Chang EC, Chou TL, Wang AH. PMID: 18072935.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
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