Rohit Gupta • UCSF Profiles

Rohit Gupta, PhD

Title(s)	Cancer Genomics Data Analyst, Pathology
School	School of Medicine
Address	513 Parnassus Avenue, HSW, #001 San Francisco CA 94143
Phone	415-476-8479
ORCID	0000-0002-5873-7510
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Biography

Education and Training

University of California, Merced

PhD

06/2019

Genomics

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Sarcoidosis faculty development: The Pipeline is Running Dry. Chest. 2024 Mar 26. Arger N, Sharp M, Bonham C, Patel D, Gupta R, James WE. PMID: 38548100.

View in: PubMed Mentions: Fields:
Pul Pulmonary Medicine
"De novo replication repair deficient glioblastoma, IDH-wildtype" is a distinct glioblastoma subtype in adults that may benefit from immune checkpoint blockade. Acta Neuropathol. 2023 Dec 11; 147(1):3. Hadad S, Gupta R, Oberheim Bush NA, Taylor JW, Villanueva-Meyer JE, Young JS, Wu J, Ravindranathan A, Zhang Y, Warrier G, McCoy L, Shai A, Pekmezci M, Perry A, Bollen AW, Phillips JJ, Braunstein SE, Raleigh DR, Theodosopoulos P, Aghi MK, Chang EF, Hervey-Jumper SL, Costello JF, de Groot J, Butowski NA, Clarke JL, Chang SM, Berger MS, Molinaro AM, Solomon DA. PMID: 38079020; PMCID: PMC10713691.

View in: PubMed Mentions: Fields:
Neu Neurology
Translation:Humans
Novel SOX10 indel mutations drive schwannomas through impaired transactivation of myelination gene programs. Neuro Oncol. 2023 12 08; 25(12):2221-2236. Williams EA, Ravindranathan A, Gupta R, Stevers NO, Suwala AK, Hong C, Kim S, Yuan JB, Wu J, Barreto J, Lucas CG, Chan E, Pekmezci M, LeBoit PE, Mully T, Perry A, Bollen A, Van Ziffle J, Devine WP, Reddy AT, Gupta N, Basnet KM, Macaulay RJB, Malafronte P, Lee H, Yong WH, Williams KJ, Juratli TA, Mata DA, Huang RSP, Hiemenz MC, Pavlick DC, Frampton GM, Janovitz T, Ross JS, Chang SM, Berger MS, Jacques L, Song JS, Costello JF, Solomon DA. PMID: 37436963; PMCID: PMC10708934.

View in: PubMed Mentions: 3 Fields:
Neo Neoplasms Neu Neurology
Translation:Humans
Somatic mosaic SOX10 indel mutations underlie a form of segmental schwannomatosis. Acta Neuropathol. 2023 12; 146(6):857-860. Terry M, Gupta R, Ravindranathan A, Wu J, Chan E, Bollen AW, Chang SM, Berger MS, Jacques L, Solomon DA. PMID: 37821623; PMCID: PMC10627975.

View in: PubMed Mentions: Fields:
Neu Neurology
Translation:Humans
Photonic-Plasmonic Coupling Enhanced Fluorescence Enabling Digital-Resolution Ultrasensitive Protein Detection. Small. 2023 Nov; 19(44):e2207239. Barya P, Xiong Y, Shepherd S, Gupta R, Akin LD, Tibbs J, Lee H, Singamaneni S, Cunningham BT. PMID: 37104850; PMCID: PMC10603207.

View in: PubMed Mentions: 4 Fields:
Bio Biomedical Engineering Nan Nanotechnology
Translation:Humans
Emerging Markets and Technologies: A Special Issue and a New Section for Biopreservation and Biobanking. Biopreserv Biobank. 2022 Oct; 20(5):415-416. Gupta RK, Kozlakidis Z. PMID: 36301144.

View in: PubMed Mentions: Fields:
Bio Biotechnology
Multiplatform molecular analyses refine classification of gliomas arising in patients with neurofibromatosis type 1. Acta Neuropathol. 2022 10; 144(4):747-765. Lucas CG, Sloan EA, Gupta R, Wu J, Pratt D, Vasudevan HN, Ravindranathan A, Barreto J, Williams EA, Shai A, Whipple NS, Bruggers CS, Maher O, Nabors B, Rodriguez M, Samuel D, Brown M, Carmichael J, Lu R, Mirchia K, Sullivan DV, Pekmezci M, Tihan T, Bollen AW, Perry A, Banerjee A, Mueller S, Gupta N, Hervey-Jumper SL, Oberheim Bush NA, Daras M, Taylor JW, Butowski NA, de Groot J, Clarke JL, Raleigh DR, Costello JF, Phillips JJ, Reddy AT, Chang SM, Berger MS, Solomon DA. PMID: 35945463; PMCID: PMC9468105.

View in: PubMed Mentions: 5 Fields:
Neu Neurology
Translation:Humans
Proficiency Testing of Epidermal Growth Factor Receptor Mutations Detection in Saliva Using Spectrum Saliva Collector (SDNA-1000) and Preservative Solution Detected by Electric Field-Induced Release and Measurement. Biopreserv Biobank. 2022 10; 20(5):461-464. Li F, Wei F, Grogan TR, Elashoff DE, Vu D, Vigerust DJ, Gupta R, Wong DTW. PMID: 35878053; PMCID: PMC9603249.

View in: PubMed Mentions: Fields:
Bio Biotechnology
Translation:Humans
Call for Special Issue Papers: Emerging Markets and Technologies. Biopreserv Biobank. 2022 Feb; 20(1):2. Gupta RK, Kozlakidis Z. PMID: 35175835.

View in: PubMed Mentions: Fields:
Bio Biotechnology
Call for Papers: Emerging Markets and Technologies. Biopreserv Biobank. 2022 Feb; 20(1):1. Kozlakidis Z, Gupta RK. PMID: 35175834.

View in: PubMed Mentions: Fields:
Bio Biotechnology
EWSR1-BEND2 fusion defines an epigenetically distinct subtype of astroblastoma. Acta Neuropathol. 2022 01; 143(1):109-113. Lucas CG, Gupta R, Wu J, Shah K, Ravindranathan A, Barreto J, Gener M, Ginn KF, Prall OWJ, Xu H, Kee D, Ko HS, Yaqoob N, Zia N, Florez A, Cha S, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA. PMID: 34825267; PMCID: PMC8732961.

View in: PubMed Mentions: 6 Fields:
Neu Neurology
Intracranial mesenchymal tumors with FET-CREB fusion are composed of at least two epigenetic subgroups distinct from meningioma and extracranial sarcomas. Brain Pathol. 2022 07; 32(4):e13037. Sloan EA, Gupta R, Koelsche C, Chiang J, Villanueva-Meyer JE, Alexandrescu S, Eschbacher JM, Wang W, Mafra M, Ud Din N, Carr-Boyd E, Watson M, Punsoni M, Oviedo A, Gilani A, Kleinschmidt-DeMasters BK, Coss DJ, Lopes MB, Reddy A, Mueller S, Cho SJ, Horvai AE, Lee JC, Pekmezci M, Tihan T, Bollen AW, Rodriguez FJ, Ellison DW, Perry A, von Deimling A, Chang SM, Berger MS, Solomon DA. PMID: 34821426; PMCID: PMC9245938.

View in: PubMed Mentions: 8 Fields:
Bra Brain Pat Pathology
Translation:Humans
Tumor DNA requirements for accurate epigenetic-based classification of CNS neoplasia. Neuro Oncol. 2021 10 01; 23(10):1798-1800. Wu J, Gupta R, Barreto J, Doo P, Joseph NM, Lee JC, Perry A, Chang SM, Berger MS, Solomon DA. PMID: 34351421; PMCID: PMC8485446.

View in: PubMed Mentions: 1 Fields:
Neo Neoplasms Neu Neurology
Translation:Humans Cells
Low-grade glioneuronal tumors with FGFR2 fusion resolve into a single epigenetic group corresponding to 'Polymorphous low-grade neuroepithelial tumor of the young'. Acta Neuropathol. 2021 09; 142(3):595-599. Gupta R, Lucas CG, Wu J, Barreto J, Shah K, Simon IB, Casavilca-Zambrano S, Brathwaite C, Zhou H, Caccamo D, Gilani A, Kleinschmidt-DeMasters BK, Lee JC, Perry A, Clarke JL, Chang SM, Berger MS, Solomon DA. PMID: 34322742; PMCID: PMC8357689.

View in: PubMed Mentions: 8 Fields:
Neu Neurology
Translation:Humans Cells
Constipation and Postprandial Pain in a Patient With Shortness of Breath. Fed Pract. 2021 Jul; 38(7):325-327. Pydah SC, Gupta R, Evans J, Kuy S. PMID: 34733082; PMCID: PMC8560112.

View in: PubMed Mentions:
The immunohistochemical, DNA methylation, and chromosomal copy number profile of cauda equina paraganglioma is distinct from extra-spinal paraganglioma. Acta Neuropathol. 2020 12; 140(6):907-917. Ramani B, Gupta R, Wu J, Barreto J, Bollen AW, Tihan T, Mummaneni PV, Ames C, Clark A, Oberheim Bush NA, Butowski N, Phillips D, King BE, Bator SM, Treynor EC, Zherebitskiy V, Quinn PS, Walker JB, Pekmezci M, Sullivan DV, Hofmann JW, Sloan EA, M Chang S, Berger MS, Solomon DA, Perry A. PMID: 32892244; PMCID: PMC7682537.

View in: PubMed Mentions: 4 Fields:
Neu Neurology
Translation:Humans Cells
Comprehensive analysis of diverse low-grade neuroepithelial tumors with FGFR1 alterations reveals a distinct molecular signature of rosette-forming glioneuronal tumor. Acta Neuropathol Commun. 2020 08 28; 8(1):151. Lucas CG, Gupta R, Doo P, Lee JC, Cadwell CR, Ramani B, Hofmann JW, Sloan EA, Kleinschmidt-DeMasters BK, Lee HS, Wood MD, Grafe M, Born D, Vogel H, Salamat S, Puccetti D, Scharnhorst D, Samuel D, Cooney T, Cham E, Jin LW, Khatib Z, Maher O, Chamyan G, Brathwaite C, Bannykh S, Mueller S, Kline CN, Banerjee A, Reddy A, Taylor JW, Clarke JL, Oberheim Bush NA, Butowski N, Gupta N, Auguste KI, Sun PP, Roland JL, Raffel C, Aghi MK, Theodosopoulos P, Chang E, Hervey-Jumper S, Phillips JJ, Pekmezci M, Bollen AW, Tihan T, Chang S, Berger MS, Perry A, Solomon DA. PMID: 32859279; PMCID: PMC7456392.

View in: PubMed Mentions: 25 Fields:
Neu Neurology
Translation:Humans
Pediatric bithalamic gliomas have a distinct epigenetic signature and frequent EGFR exon 20 insertions resulting in potential sensitivity to targeted kinase inhibition. Acta Neuropathol. 2020 06; 139(6):1071-1088. Mondal G, Lee JC, Ravindranathan A, Villanueva-Meyer JE, Tran QT, Allen SJ, Barreto J, Gupta R, Doo P, Van Ziffle J, Onodera C, Devine P, Grenert JP, Samuel D, Li R, Metrock LK, Jin LW, Antony R, Alashari M, Cheshier S, Whipple NS, Bruggers C, Raffel C, Gupta N, Kline CN, Reddy A, Banerjee A, Hall MD, Mehta MP, Khatib Z, Maher OM, Brathwaite C, Pekmezci M, Phillips JJ, Bollen AW, Tihan T, Lucas JT, Broniscer A, Berger MS, Perry A, Orr BA, Solomon DA. PMID: 32303840; PMCID: PMC7792550.

View in: PubMed Mentions: 25 Fields:
Neu Neurology
Translation:Humans
Introduction to New Section: Emerging Markets and Technologies. Biopreserv Biobank. 2020 Apr; 18(2):45. Gupta R, Brooks A. PMID: 32281896.

View in: PubMed Mentions: Fields:
Bio Biotechnology
Translation:Humans
Gliomas arising in the setting of Li-Fraumeni syndrome stratify into two molecular subgroups with divergent clinicopathologic features. Acta Neuropathol. 2020 05; 139(5):953-957. Sloan EA, Hilz S, Gupta R, Cadwell C, Ramani B, Hofmann J, Kline CN, Banerjee A, Reddy A, Oberheim Bush NA, Chang S, Braunstein S, Chang EF, Raffel C, Gupta N, Sun PP, Kim JYH, Moes G, Alva E, Li R, Bruggers CS, Alashari M, Wetmore C, Garg S, Dishop M, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Phillips JJ, Pekmezci M, Tihan T, Bollen AW, Berger MS, Costello JF, Perry A, Solomon DA. PMID: 32157385; PMCID: PMC7183424.

View in: PubMed Mentions: 8 Fields:
Neu Neurology
Translation:Humans
Management of cirrhotic ascites: physiological basis of diuretic action. Eur J Intern Med. 2006 Jan; 17(1):8-19. Rosner MH, Gupta R, Ellison D, Okusa MD. PMID: 16378879.

View in: PubMed Mentions: 2 Fields:
Int Internal Medicine