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A single-cell genome perspective on studying intracellular associations in unicellular eukaryotes. Philos Trans R Soc Lond B Biol Sci. 2019 11 25; 374(1786):20190082.
Tyml T, Date SV, Woyke T. PMID: 31587647.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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A Putative Bacterial ABC Transporter Circumvents the Essentiality of Signal Peptidase. mBio. 2016 09 06; 7(5).
Morisaki JH, Smith PA, Date SV, Kajihara KK, Truong CL, Modrusan Z, Yan D, Kang J, Xu M, Shah IM, Mintzer R, Kofoed EM, Cheung TK, Arnott D, Koehler MF, Heise CE, Brown EJ, Tan MW, Hazenbos WL. PMID: 27601569.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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De Novo Guanine Biosynthesis but Not the Riboswitch-Regulated Purine Salvage Pathway Is Required for Staphylococcus aureus Infection In Vivo. J Bacteriol. 2016 07 15; 198(14):2001-2015.
Kofoed EM, Yan D, Katakam AK, Reichelt M, Lin B, Kim J, Park S, Date SV, Monk IR, Xu M, Austin CD, Maurer T, Tan MW. PMID: 27161118.
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PubMed Mentions:
15 Fields:
Translation:
HumansAnimalsCells
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Global gene expression of methicillin-resistant Staphylococcus aureus USA300 during human and mouse infection. J Infect Dis. 2014 May 15; 209(10):1542-50.
Date SV, Modrusan Z, Lawrence M, Morisaki JH, Toy K, Shah IM, Kim J, Park S, Xu M, Basuino L, Chan L, Zeitschel D, Chambers HF, Tan MW, Brown EJ, Diep BA, Hazenbos WL, Date SV, Modrusan Z, Lawrence M, Morisaki JH, Toy K, Shah IM, Kim J, Park S, Xu M, Basuino L, Chan L, Zeitschel D, Chambers HF, Tan MW, Brown EJ, Diep BA, Hazenbos WL. PMID: 24286981.
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PubMed Mentions:
39 Fields:
Translation:
HumansAnimalsCells
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Identifying potential therapeutic targets of methicillin-resistant Staphylococcus aureus through in vivo proteomic analysis. J Infect Dis. 2014 May 15; 209(10):1533-41.
Diep BA, Phung Q, Date S, Arnott D, Bakalarski C, Xu M, Nakamura G, Swem DL, Alexander MK, Le HN, Mai TT, Tan MW, Brown EJ, Nishiyama M, Diep BA, Phung Q, Date S, Arnott D, Bakalarski C, Xu M, Nakamura G, Swem DL, Alexander MK, Le HN, Mai TT, Tan MW, Brown EJ, Nishiyama M. PMID: 24280367; PMCID: PMC3997574.
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PubMed Mentions:
18 Fields:
Translation:
HumansAnimalsCells
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Glycan shifting on hepatitis C virus (HCV) E2 glycoprotein is a mechanism for escape from broadly neutralizing antibodies. J Mol Biol. 2013 Jun 12; 425(11):1899-1914.
Pantua H, Diao J, Ultsch M, Hazen M, Mathieu M, McCutcheon K, Takeda K, Date S, Cheung TK, Phung Q, Hass P, Arnott D, Hongo JA, Matthews DJ, Brown A, Patel AH, Kelley RF, Eigenbrot C, Kapadia SB, Pantua H, Diao J, Ultsch M, Hazen M, Mathieu M, McCutcheon K, Takeda K, Date S, Cheung TK, Phung Q, Hass P, Arnott D, Hongo JA, Matthews DJ, Brown A, Patel AH, Kelley RF, Eigenbrot C, Kapadia SB. PMID: 23458406.
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PubMed Mentions:
65 Fields:
Translation:
Cells
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Analysis of the nucleotide sequence of the guinea pig cytomegalovirus (GPCMV) genome. Virol J. 2008 Nov 12; 5:139.
Schleiss MR, McGregor A, Choi KY, Date SV, Cui X, McVoy MA, Schleiss MR, McGregor A, Choi KY, Date SV, Cui X, McVoy MA. PMID: 19014498; PMCID: PMC2614972.
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PubMed Mentions:
28 Fields:
Translation:
Cells
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The Rosetta stone method. Methods Mol Biol. 2008; 453:169-80.
Date SV, Date SV. PMID: 18712302.
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PubMed Mentions:
9 Fields:
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Phylogenetic profiling. Methods Mol Biol. 2008; 453:201-16.
Date SV, Peregrín-Alvarez JM, Date SV, Peregrín-Alvarez JM. PMID: 18712304.
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PubMed Mentions:
4 Fields:
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Estimating protein function using protein-protein relationships. Methods Mol Biol. 2007; 408:109-27.
Date SV, Date SV. PMID: 18314580.
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PubMed Mentions:
5 Fields:
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Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale. Genome Res. 2006 Apr; 16(4):542-9.
Date SV, Stoeckert CJ, Date SV, Stoeckert CJ. PMID: 16520460; PMCID: PMC1457034.
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PubMed Mentions:
49 Fields:
Translation:
Animals
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Protein function prediction using the Protein Link EXplorer (PLEX). Bioinformatics. 2005 May 15; 21(10):2558-9.
Date SV, Marcotte EM, Date SV, Marcotte EM. PMID: 15701682.
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PubMed Mentions:
13 Fields:
Translation:
Cells
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A probabilistic functional network of yeast genes. Science. 2004 Nov 26; 306(5701):1555-8.
Lee I, Date SV, Adai AT, Marcotte EM, Lee I, Date SV, Adai AT, Marcotte EM. PMID: 15567862.
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PubMed Mentions:
286 Fields:
Translation:
AnimalsCells
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Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res. 2004 Nov; 14(11):2221-34.
Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV, Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV. PMID: 15520287; PMCID: PMC525680.
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PubMed Mentions:
114 Fields:
Translation:
Cells
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LGL: creating a map of protein function with an algorithm for visualizing very large biological networks. J Mol Biol. 2004 Jun 25; 340(1):179-90.
Adai AT, Date SV, Wieland S, Marcotte EM, Adai AT, Date SV, Wieland S, Marcotte EM. PMID: 15184029.
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PubMed Mentions:
36 Fields:
Translation:
HumansCells
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Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages. Nat Biotechnol. 2003 Sep; 21(9):1055-62.
Date SV, Marcotte EM, Date SV, Marcotte EM. PMID: 12923548.
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PubMed Mentions:
76 Fields:
Translation:
Cells
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Exploiting big biology: integrating large-scale biological data for function inference. Brief Bioinform. 2001 Dec; 2(4):363-74.
Marcotte E, Date S, Marcotte E, Date S. PMID: 11808748.
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PubMed Mentions:
9 Fields: