Shailesh Date • UCSF Profiles

Shailesh Date, PhD

Title(s)	Associate Professor, Epidemiology & Biostatistics
School	School of Medicine
Phone	--
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Biography

Education and Training

Stanford University (Graduate School of Business), Stanford, CA	Ignite Program	2013	Innovation & Entrepreneurship
Univ. of Pennsylvania School of Medicine, Philadelphia, PA	Postdoc	2008	Infectious Diseases (Comp. Bio. of Apicomplexan Parasites)
Univ. Of Texas at Austin, Austin, Texas	Ph.D.	2003	Molecular Biology (Computational Biology)
Univ. of Pune, Pune, India	M.Sc.	1997	Botany (Plant Biotech. as specialization)
Fergusson College, Pune, India	B.Sc. (Hons)	1995	Botany

Overview

Interests

Urban Pediatric Health, Microbial Ecology & Evolution, Complex Systems in Biology, Computational Biology & Bioinformatics

Websites

My profile at the LRC

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium. Microbiome. 2023 06 13; 11(1):130. Džunková M, La Clair JJ, Tyml T, Doud D, Schulz F, Piquer-Esteban S, Porcel Sanchis D, Osborn A, Robinson D, Louie KB, Bowen BP, Bowers RM, Lee J, Arnau V, Díaz-Villanueva W, Stepanauskas R, Gosliner T, Date SV, Northen TR, Cheng JF, Burkart MD, Woyke T. PMID: 37312139; PMCID: PMC10262491.

View in: PubMed Mentions: Fields:
Gen Genetics Mic Microbiology
Translation:Animals Cells
A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles. Science. 2022 06 24; 376(6600):1453-1458. Volland JM, Gonzalez-Rizzo S, Gros O, Tyml T, Ivanova N, Schulz F, Goudeau D, Elisabeth NH, Nath N, Udwary D, Malmstrom RR, Guidi-Rontani C, Bolte-Kluge S, Davies KM, Jean MR, Mansot JL, Mouncey NJ, Angert ER, Woyke T, Date SV. PMID: 35737788.

View in: PubMed Mentions: 10 Fields:
Sci Science
Translation:Cells
Examining the Relationship Between the Testate Amoeba Hyalosphenia papilio (Arcellinida, Amoebozoa) and its Associated Intracellular Microalgae Using Molecular and Microscopic Methods. Protist. 2022 02; 173(1):125853. Weiner AKM, Cullison B, Date SV, Tyml T, Volland JM, Woyke T, Katz LA, Sleith RS. PMID: 35030517; PMCID: PMC9148389.

View in: PubMed Mentions: 1 Fields:
Bio Biology
Translation:Animals
A single-cell genome perspective on studying intracellular associations in unicellular eukaryotes. Philos Trans R Soc Lond B Biol Sci. 2019 11 25; 374(1786):20190082. Tyml T, Date SV, Woyke T. PMID: 31587647; PMCID: PMC6792452.

View in: PubMed Mentions: 1 Fields:
Bio Biology
Translation:Cells
A Putative Bacterial ABC Transporter Circumvents the Essentiality of Signal Peptidase. mBio. 2016 09 06; 7(5). Morisaki JH, Smith PA, Date SV, Kajihara KK, Truong CL, Modrusan Z, Yan D, Kang J, Xu M, Shah IM, Mintzer R, Kofoed EM, Cheung TK, Arnott D, Koehler MF, Heise CE, Brown EJ, Tan MW, Hazenbos WL. PMID: 27601569; PMCID: PMC5013292.

View in: PubMed Mentions: 10 Fields:
Mic Microbiology
Translation:Animals Cells
De Novo Guanine Biosynthesis but Not the Riboswitch-Regulated Purine Salvage Pathway Is Required for Staphylococcus aureus Infection In Vivo. J Bacteriol. 2016 07 15; 198(14):2001-2015. Kofoed EM, Yan D, Katakam AK, Reichelt M, Lin B, Kim J, Park S, Date SV, Monk IR, Xu M, Austin CD, Maurer T, Tan MW. PMID: 27161118; PMCID: PMC4936099.

View in: PubMed Mentions: 23 Fields:
Bac Bacteriology
Translation:Humans Animals Cells
Global gene expression of methicillin-resistant Staphylococcus aureus USA300 during human and mouse infection. J Infect Dis. 2014 May 15; 209(10):1542-50. Date SV, Modrusan Z, Lawrence M, Morisaki JH, Toy K, Shah IM, Kim J, Park S, Xu M, Basuino L, Chan L, Zeitschel D, Chambers HF, Tan MW, Brown EJ, Diep BA, Hazenbos WL. PMID: 24286981.

View in: PubMed Mentions: 52 Fields:
Com Communicable Diseases
Translation:Humans Animals Cells
Identifying potential therapeutic targets of methicillin-resistant Staphylococcus aureus through in vivo proteomic analysis. J Infect Dis. 2014 May 15; 209(10):1533-41. Diep BA, Phung Q, Date S, Arnott D, Bakalarski C, Xu M, Nakamura G, Swem DL, Alexander MK, Le HN, Mai TT, Tan MW, Brown EJ, Nishiyama M. PMID: 24280367; PMCID: PMC3997574.

View in: PubMed Mentions: 21 Fields:
Com Communicable Diseases
Translation:Humans Animals Cells
Glycan shifting on hepatitis C virus (HCV) E2 glycoprotein is a mechanism for escape from broadly neutralizing antibodies. J Mol Biol. 2013 Jun 12; 425(11):1899-1914. Pantua H, Diao J, Ultsch M, Hazen M, Mathieu M, McCutcheon K, Takeda K, Date S, Cheung TK, Phung Q, Hass P, Arnott D, Hongo JA, Matthews DJ, Brown A, Patel AH, Kelley RF, Eigenbrot C, Kapadia SB. PMID: 23458406.

View in: PubMed Mentions: 80 Fields:
Mol Molecular Biology
Translation:Cells
Analysis of the nucleotide sequence of the guinea pig cytomegalovirus (GPCMV) genome. Virol J. 2008 Nov 12; 5:139. Schleiss MR, McGregor A, Choi KY, Date SV, Cui X, McVoy MA. PMID: 19014498; PMCID: PMC2614972.

View in: PubMed Mentions: 30 Fields:
Vir Virology
Translation:Cells
The Rosetta stone method. Methods Mol Biol. 2008; 453:169-80. Date SV. PMID: 18712302.

View in: PubMed Mentions: 9 Fields:
Mol Molecular Biology
Phylogenetic profiling. Methods Mol Biol. 2008; 453:201-16. Date SV, Peregrín-Alvarez JM. PMID: 18712304.

View in: PubMed Mentions: 4 Fields:
Mol Molecular Biology
Estimating protein function using protein-protein relationships. Methods Mol Biol. 2007; 408:109-27. Date SV. PMID: 18314580.

View in: PubMed Mentions: 6 Fields:
Mol Molecular Biology
Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale. Genome Res. 2006 Apr; 16(4):542-9. Date SV, Stoeckert CJ. PMID: 16520460; PMCID: PMC1457034.

View in: PubMed Mentions: 49 Fields:
Gen Genetics
Translation:Animals
Protein function prediction using the Protein Link EXplorer (PLEX). Bioinformatics. 2005 May 15; 21(10):2558-9. Date SV, Marcotte EM. PMID: 15701682.

View in: PubMed Mentions: 13 Fields:
Com Computational Biology
Translation:Cells
A probabilistic functional network of yeast genes. Science. 2004 Nov 26; 306(5701):1555-8. Lee I, Date SV, Adai AT, Marcotte EM. PMID: 15567862.

View in: PubMed Mentions: 301 Fields:
Sci Science
Translation:Animals Cells
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res. 2004 Nov; 14(11):2221-34. Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV. PMID: 15520287; PMCID: PMC525680.

View in: PubMed Mentions: 122 Fields:
Gen Genetics
Translation:Cells
LGL: creating a map of protein function with an algorithm for visualizing very large biological networks. J Mol Biol. 2004 Jun 25; 340(1):179-90. Adai AT, Date SV, Wieland S, Marcotte EM. PMID: 15184029.

View in: PubMed Mentions: 43 Fields:
Mol Molecular Biology
Translation:Humans Cells
Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages. Nat Biotechnol. 2003 Sep; 21(9):1055-62. Date SV, Marcotte EM. PMID: 12923548.

View in: PubMed Mentions: 82 Fields:
Bio Biotechnology
Translation:Cells
Exploiting big biology: integrating large-scale biological data for function inference. Brief Bioinform. 2001 Dec; 2(4):363-74. Marcotte E, Date S. PMID: 11808748.

View in: PubMed Mentions: 11 Fields:
Com Computational Biology