Silvia Pineda San Juan, PhD
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Title(s) | Postdoctoral Scholar, Computational Health Scienc |
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School | School of Medicine |
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Address | Location Required Varies CA 00000
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Phone | -- |
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vCard | Download vCard |
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Biography Zaragoza University, Spain | B.S. | 2006 | Statistics | Madrid Complutense University, Spain | M.S. | 2009 | Statistics | Madrid Autónoma University, Spain | M.S. | 2012 | Quantitative Methods in Epidemiology | University of Liege, Belgium | Ph.D. | 2015 | System and Modeling Unit | National Cancer Research Centre | Ph.D. | 2015 | Genetic and Molecular Epidemiology |
Ministry of Education and Science, Spain | 2006 | | Statistics Degree National Award | Zaragoza University, Spain | 2006 | | Extraordinary Award for Statistics Degree |
Overview Silvia is currently a Post Doctoral fellow between the Sirota lab (Computational Health Science at UCSF) and Sarwal lab (Department of Surgery at UCSF) working on omics integration for organ transplantation. She completed her PhD in Statistical Genetics at the Spanish National Cancer Research Centre jointly with the University of Liege. Her work focused on the development and application of advanced statistical methods for the integration of omics data. Her research interest is based on the development of advanced statistical approaches to integrate omics and clinical/epidemiological data to better understand complex diseases. Now, she is working with Next Generation Sequencing data to improve rejection in kidney transplantation.
ORNG Applications Bibliographic
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Characterizing pre-transplant and post-transplant kidney rejection risk by B cell immune repertoire sequencing. Nat Commun. 2019 04 23; 10(1):1906.
Pineda S, Sigdel TK, Liberto JM, Vincenti F, Sirota M, Sarwal MM. PMID: 31015506.
View in: PubMed Mentions: 3 Fields: Translation: HumansCells
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Challenges in the Integration of Omics and Non-Omics Data. Genes (Basel). 2019 03 20; 10(3).
López de Maturana E, Alonso L, Alarcón P, Martín-Antoniano IA, Pineda S, Piorno L, Calle ML, Malats N. PMID: 30897838.
View in: PubMed Mentions: 13 Fields: Translation: Humans
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Determining Significance in the New Era for P Values. J Pediatr Gastroenterol Nutr. 2018 11; 67(5):547-548.
Pineda S, Sirota M. PMID: 30052572.
View in: PubMed Mentions: Fields: Translation: Humans
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Corrigendum: Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant. Front Immunol. 2018; 9:107.
Pineda S, Sigdel TK, Chen J, Jackson AM, Sirota M, Sarwal MM. PMID: 29406538.
View in: PubMed Mentions: Fields:
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Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant. Front Immunol. 2017; 8:1687.
Pineda S, Sigdel TK, Chen J, Jackson AM, Sirota M, Sarwal MM. PMID: 29259604.
View in: PubMed Mentions: 7 Fields:
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Integrative eQTL analysis of tumor and host omics data in individuals with bladder cancer. Genet Epidemiol. 2017 09; 41(6):567-573.
Pineda S, Van Steen K, Malats N. PMID: 28643332.
View in: PubMed Mentions: Fields: Translation: HumansCells
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Toward the integration of Omics data in epidemiological studies: still a "long and winding road". Genet Epidemiol. 2016 11; 40(7):558-569.
López de Maturana E, Pineda S, Brand A, Van Steen K, Malats N. PMID: 27432111.
View in: PubMed Mentions: 6 Fields: Translation: Humans
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Integration Analysis of Three Omics Data Using Penalized Regression Methods: An Application to Bladder Cancer. PLoS Genet. 2015 Dec; 11(12):e1005689.
Pineda S, Real FX, Kogevinas M, Carrato A, Chanock SJ, Malats N, Van Steen K. PMID: 26646822.
View in: PubMed Mentions: 15 Fields: Translation: HumansCells
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[Not Available]. Prog Urol. 2015 Nov; 25(13):758-9.
Mason-Lecomte A, Lopez de Maturana E, Pineda S, Rava M, Vordos D, Allory Y, Real F, Malats N. PMID: 26544283.
View in: PubMed Mentions: Fields:
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Framework for the Integration of Genomics, Epigenomics and Transcriptomics in Complex Diseases. Hum Hered. 2015; 79(3-4):124-36.
Pineda S, Gomez-Rubio P, Picornell A, Bessonov K, Márquez M, Kogevinas M, Real FX, Van Steen K, Malats N. PMID: 26201698.
View in: PubMed Mentions: 8 Fields: Translation: HumansCells
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Genetic variation in the TP53 pathway and bladder cancer risk. a comprehensive analysis. PLoS One. 2014; 9(5):e89952.
Pineda S, Milne RL, Calle ML, Rothman N, López de Maturana E, Herranz J, Kogevinas M, Chanock SJ, Tardón A, Márquez M, Guey LT, García-Closas M, Lloreta J, Baum E, González-Neira A, Carrato A, Navarro A, Silverman DT, Real FX, Malats N. PMID: 24818791.
View in: PubMed Mentions: 6 Fields: Translation: Humans
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FGF receptor genes and breast cancer susceptibility: results from the Breast Cancer Association Consortium. Br J Cancer. 2014 Feb 18; 110(4):1088-100.
Agarwal D, Pineda S, Michailidou K, Herranz J, Pita G, Moreno LT, Alonso MR, Dennis J, Wang Q, Bolla MK, Meyer KB, Menéndez-Rodríguez P, Hardisson D, Mendiola M, González-Neira A, Lindblom A, Margolin S, Swerdlow A, Ashworth A, Orr N, Jones M, Matsuo K, Ito H, Iwata H, Kondo N, , , Hartman M, Hui M, Lim WY, Iau PT, Sawyer E, Tomlinson I, Kerin M, Miller N, Kang D, Choi J-, Park SK, Noh D-, Hopper JL, Schmidt DF, Makalic E, Southey MC, Teo SH, Yip CH, Sivanandan K, Tay W-, Brauch H, Brüning T, Hamann U, , Dunning AM, Shah M, Andrulis IL, Knight JA, Glendon G, Tchatchou S, Schmidt MK, Broeks A, Rosenberg EH, van't Veer LJ, Fasching PA, Renner SP, Ekici AB, Beckmann MW, Shen C-, Hsiung C-, Yu J-, Hou M-, Blot W, Cai Q, Wu AH, Tseng C-, Van Den Berg D, Stram DO, Cox A, Brock IW, Reed MW, Muir K, Lophatananon A, Stewart-Brown S, Siriwanarangsan P, Zheng W, Deming-Halverson S, Shrubsole MJ, Long J, Shu X-, Lu W, Gao Y-, Zhang B, Radice P, Peterlongo P, Manoukian S, Mariette F, Sangrajrang S, McKay J, Couch FJ, Toland AE, , Yannoukakos D, Fletcher O, Johnson N, dos Santos Silva I, Peto J, Marme F, Burwinkel B, Guénel P, Truong T, Sanchez M, Mulot C, Bojesen SE, Nordestgaard BG, Flyer H, Brenner H, Dieffenbach AK, Arndt V, Stegmaier C, Mannermaa A, Kataja V, Kosma V-, Hartikainen JM, Lambrechts D, Yesilyurt BT, Floris G, Leunen K, Chang-Claude J, Rudolph A, Seibold P, Flesch-Janys D, Wang X, Olson JE, Vachon C, Purrington K, Giles GG, Severi G, Baglietto L, Haiman CA, Henderson BE, Schumacher F, Marchand LL, Simard J, Dumont M, Goldberg MS, Labréche F, Winqvist R, Pylkäs K, Jukkola-Vuorinen A, Grip M, Devilee P, Tollenaar RA, Seynaeve C, García-Closas M, Chanock SJ, Lissowska J, Figueroa JD, Czene K, Eriksson M, Humphreys K, Darabi H, Hooning MJ, Kriege M, Collée JM, Tilanus-Linthorst M, Li J, Jakubowska A, Lubinski J, Jaworska-Bieniek K, Durda K, Nevanlinna H, Muranen TA, Aittomäki K, Blomqvist C, Bogdanova N, Dörk T, Hall P, Chenevix-Trench G, Easton DF, Pharroah PD, Arias-Perez JI, Zamora P, Benítez J, Milne RL. PMID: 24548884.
View in: PubMed Mentions: 11 Fields: Translation: Humans
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Effects of cyclin D1 gene amplification and protein expression on time to recurrence in postmenopausal breast cancer patients treated with anastrozole or tamoxifen: a TransATAC study. Breast Cancer Res. 2012 Apr 04; 14(2):R57.
Lundgren K, Brown M, Pineda S, Cuzick J, Salter J, Zabaglo L, Howell A, Dowsett M, Landberg G, . PMID: 22475046.
View in: PubMed Mentions: 33 Fields: Translation: Humans
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Prognostic value of a combined estrogen receptor, progesterone receptor, Ki-67, and human epidermal growth factor receptor 2 immunohistochemical score and comparison with the Genomic Health recurrence score in early breast cancer. J Clin Oncol. 2011 Nov 10; 29(32):4273-8.
Cuzick J, Dowsett M, Pineda S, Wale C, Salter J, Quinn E, Zabaglo L, Mallon E, Green AR, Ellis IO, Howell A, Buzdar AU, Forbes JF. PMID: 21990413.
View in: PubMed Mentions: 188 Fields: Translation: Humans
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Predictive algorithms for adjuvant therapy: TransATAC. Steroids. 2011 Jul; 76(8):777-80.
Dowsett M, Salter J, Zabaglo L, Mallon E, Howell A, Buzdar AU, Forbes J, Pineda S, Cuzick J. PMID: 21470560.
View in: PubMed Mentions: 7 Fields: Translation: Humans
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Year | Publications |
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2011 | 2 | 2012 | 1 | 2014 | 2 | 2015 | 3 | 2016 | 1 | 2017 | 2 | 2018 | 2 | 2019 | 2 |
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This graph shows the number and percent of publications by field.
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Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
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