Simona Carini

Title(s)Programmer, Medicine
SchoolSchool of Medicine
PronounsShe/Her/Hers
ORCID ORCID Icon0000-0002-4054-9458 Additional info
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    Collapse Biography 
    Collapse education and training
    Mills College, Oakland, CAM.A.2001Mathematics and Computer Science
    Catholic University of the Sacred Heart, Milan, ItalyB.A.1991Letters
    Nursing School "Renato Donatelli", Perugia, ItalyNursing Diploma1984Nursing School

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Advancing digital sensing in mental health research. NPJ Digit Med. 2024 Dec 18; 7(1):362. Akre S, Seok D, Douglas C, Aguilera A, Carini S, Dunn J, Hotopf M, Mohr DC, Bui AAT, Freimer NB. PMID: 39695319; PMCID: PMC11655837.
      View in: PubMed   Mentions:
    2. Ontology-based categorization of clinical studies by their conditions. J Biomed Inform. 2022 11; 135:104235. Liu H, Carini S, Chen Z, Phillips Hey S, Sim I, Weng C. PMID: 36283581.
      View in: PubMed   Mentions: 2     Fields:    
    3. Standardized Integration of Person-Generated Data Into Routine Clinical Care. JMIR Mhealth Uhealth. 2022 02 10; 10(2):e31048. Zeng B, Bove R, Carini S, Lee JS, Pollak JP, Schleimer E, Sim I. PMID: 35142627; PMCID: PMC8874926.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    4. Sensor Data Integration: A New Cross-Industry Collaboration to Articulate Value, Define Needs, and Advance a Framework for Best Practices. J Med Internet Res. 2021 11 09; 23(11):e34493. Clay I, Angelopoulos C, Bailey AL, Blocker A, Carini S, Carvajal R, Drummond D, McManus KF, Oakley-Girvan I, Patel KB, Szepietowski P, Goldsack JC. PMID: 34751656; PMCID: PMC8663457.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    5. Recent Academic Research on Clinically Relevant Digital Measures: Systematic Review. J Med Internet Res. 2021 09 15; 23(9):e29875. Shandhi MMH, Goldsack JC, Ryan K, Bennion A, Kotla AV, Feng A, Jiang Y, Wang WK, Hurst T, Patena J, Carini S, Chung J, Dunn J. PMID: 34524089; PMCID: PMC8482196.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    6. Chia, a large annotated corpus of clinical trial eligibility criteria. Sci Data. 2020 08 27; 7(1):281. Kury F, Butler A, Yuan C, Fu LH, Sun Y, Liu H, Sim I, Carini S, Weng C. PMID: 32855408; PMCID: PMC7452886.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    7. A randomized trial provided new evidence on the accuracy and efficiency of traditional vs. electronically annotated abstraction approaches in systematic reviews. J Clin Epidemiol. 2019 11; 115:77-89. Li T, Saldanha IJ, Jap J, Smith BT, Canner J, Hutfless SM, Branch V, Carini S, Chan W, de Bruijn B, Wallace BC, Walsh SA, Whamond EJ, Murad MH, Sim I, Berlin JA, Lau J, Dickersin K, Schmid CH. PMID: 31302205.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    8. Evaluating Data Abstraction Assistant, a novel software application for data abstraction during systematic reviews: protocol for a randomized controlled trial. Syst Rev. 2016 11 22; 5(1):196. Saldanha IJ, Schmid CH, Lau J, Dickersin K, Berlin JA, Jap J, Smith BT, Carini S, Chan W, De Bruijn B, Wallace BC, Hutfless SM, Sim I, Murad MH, Walsh SA, Whamond EJ, Li T. PMID: 27876082; PMCID: PMC5120497.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    9. Multivariate analysis of the population representativeness of related clinical studies. J Biomed Inform. 2016 Apr; 60:66-76. He Z, Ryan P, Hoxha J, Wang S, Carini S, Sim I, Weng C. PMID: 26820188; PMCID: PMC4837055.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    10. Visual aggregate analysis of eligibility features of clinical trials. J Biomed Inform. 2015 Apr; 54:241-55. He Z, Carini S, Sim I, Weng C. PMID: 25615940; PMCID: PMC4408222.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    11. A method for analyzing commonalities in clinical trial target populations. AMIA Annu Symp Proc. 2014; 2014:1777-86. He Z, Carini S, Hao T, Sim I, Weng C. PMID: 25954450; PMCID: PMC4419878.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    12. The Ontology of Clinical Research (OCRe): an informatics foundation for the science of clinical research. J Biomed Inform. 2014 Dec; 52:78-91. Sim I, Tu SW, Carini S, Lehmann HP, Pollock BH, Peleg M, Wittkowski KM. PMID: 24239612; PMCID: PMC4019723.
      View in: PubMed   Mentions: 28     Fields:    Translation:Humans
    13. Sponsorship and design characteristics of trials registered in ClinicalTrials.gov. Contemp Clin Trials. 2013 Mar; 34(2):348-55. Roumiantseva D, Carini S, Sim I, Wagner TH. PMID: 23380028.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    14. Deriving an abstraction network to support quality assurance in OCRe. AMIA Annu Symp Proc. 2012; 2012:681-9. Ochs C, Agrawal A, Perl Y, Halper M, Tu SW, Carini S, Sim I, Noy N, Musen M, Geller J. PMID: 23304341; PMCID: PMC3540580.
      View in: PubMed   Mentions: 11     Fields:    
    15. Ontology-based federated data access to human studies information. AMIA Annu Symp Proc. 2012; 2012:856-65. Sim I, Carini S, Tu SW, Detwiler LT, Brinkley J, Mollah SA, Burke K, Lehmann HP, Chakraborty S, Wittkowski KM, Pollock BH, Johnson TM, Huser V, Human Studies Database Project. PMID: 23304360; PMCID: PMC3540523.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    16. EliXR-TIME: A Temporal Knowledge Representation for Clinical Research Eligibility Criteria. AMIA Jt Summits Transl Sci Proc. 2012; 2012:71-80. Boland MR, Tu SW, Carini S, Sim I, Weng C. PMID: 22779055; PMCID: PMC3392056.
      View in: PubMed   Mentions: 19  
    17. Network analysis of clinical trials on depression: implications for comparative effectiveness research. AMIA Annu Symp Proc. 2010 Nov 13; 2010:51-5. Bhavnani SK, Carini S, Ross J, Sim I. PMID: 21346939; PMCID: PMC3041357.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    18. ExaCT: automatic extraction of clinical trial characteristics from journal publications. BMC Med Inform Decis Mak. 2010 Sep 28; 10:56. Kiritchenko S, de Bruijn B, Carini S, Martin J, Sim I. PMID: 20920176; PMCID: PMC2954855.
      View in: PubMed   Mentions: 63     Fields:    Translation:Humans
    19. A practical method for transforming free-text eligibility criteria into computable criteria. J Biomed Inform. 2011 Apr; 44(2):239-50. Tu SW, Peleg M, Carini S, Bobak M, Ross J, Rubin D, Sim I. PMID: 20851207; PMCID: PMC3129371.
      View in: PubMed   Mentions: 64     Fields:    
    20. Analysis of eligibility criteria complexity in clinical trials. Summit Transl Bioinform. 2010 Mar 01; 2010:46-50. Ross J, Tu S, Carini S, Sim I. PMID: 21347148; PMCID: PMC3041539.
      View in: PubMed   Mentions: 63  
    21. The human studies database project: federating human studies design data using the ontology of clinical research. Summit Transl Bioinform. 2010 Mar 01; 2010:51-5. Sim I, Carini S, Tu S, Wynden R, Pollock BH, Mollah SA, Gabriel D, Hagler HK, Scheuermann RH, Lehmann HP, Wittkowski KM, Nahm M, Bakken S. PMID: 21347149; PMCID: PMC3041546.
      View in: PubMed   Mentions: 20  
    22. Ontology mapping and data discovery for the translational investigator. Summit Transl Bioinform. 2010 Mar 01; 2010:66-70. Wynden R, Weiner MG, Sim I, Gabriel D, Casale M, Carini S, Hastings S, Ervin D, Tu S, Gennari JH, Anderson N, Mobed K, Lakshminarayanan P, Massary M, Cucina RJ. PMID: 21347152; PMCID: PMC3041530.
      View in: PubMed   Mentions: 4  
    23. Development and evaluation of a study design typology for human research. AMIA Annu Symp Proc. 2009 Nov 14; 2009:81-5. Carini S, Pollock BH, Lehmann HP, Bakken S, Barbour EM, Gabriel D, Hagler HK, Harper CR, Mollah SA, Nahm M, Nguyen HH, Scheuermann RH, Sim I. PMID: 20351827; PMCID: PMC2815479.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    24. An interactive tool for visualizing design heterogeneity in clinical trials. AMIA Annu Symp Proc. 2008 Nov 06; 298-302. Hernandez ME, Carini S, Storey MA, Sim I. PMID: 18998925; PMCID: PMC2656051.
      View in: PubMed   Mentions: 4     Fields:    
    25. Automated information extraction of key trial design elements from clinical trial publications. AMIA Annu Symp Proc. 2008 Nov 06; 141-5. de Bruijn B, Carini S, Kiritchenko S, Martin J, Sim I. PMID: 18999067; PMCID: PMC2655966.
      View in: PubMed   Mentions: 25     Fields:    
    26. An ontology of randomized controlled trials for evidence-based practice: content specification and evaluation using the competency decomposition method. J Biomed Inform. 2004 Apr; 37(2):108-19. Sim I, Olasov B, Carini S. PMID: 15120657.
      View in: PubMed   Mentions: 20     Fields:    
    27. Trial bank publishing: phase I results. Stud Health Technol Inform. 2004; 107(Pt 2):1476-80. Sim I, Carini S, Olasov B, Jeng S. PMID: 15361060.
      View in: PubMed   Mentions: 3     Fields:    
    28. SysBank: a knowledge base for systematic reviews of randomized clinical trials. AMIA Annu Symp Proc. 2003; 804. Carini S, Sim I. PMID: 14728309; PMCID: PMC1479927.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    29. The Trial Bank system: capturing randomized trials for evidence-based medicine. AMIA Annu Symp Proc. 2003; 1076. Sim I, Olasov B, Carini S. PMID: 14728579; PMCID: PMC1479965.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
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