Simone Bianco, PhD

Title(s)Employee of Affiliated Org., Biochemistry and Biophysics
SchoolSchool of Medicine
Address600 16th Street
San Francisco CA 94158
ORCID ORCID Icon0000-0003-3367-2084 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes. Viruses. 2021 12 03; 13(12). Beck KL, Seabolt E, Agarwal A, Nayar G, Bianco S, Krishnareddy H, Ngo TA, Kunitomi M, Mukherjee V, Kaufman JH. PMID: 34960694; PMCID: PMC8706859.
      View in: PubMed   Mentions:
    2. A defective viral genome strategy elicits broad protective immunity against respiratory viruses. Cell. 2021 12 09; 184(25):6037-6051.e14. Xiao Y, Lidsky PV, Shirogane Y, Aviner R, Wu CT, Li W, Zheng W, Talbot D, Catching A, Doitsh G, Su W, Gekko CE, Nayak A, Ernst JD, Brodsky L, Brodsky E, Rousseau E, Capponi S, Bianco S, Nakamura R, Jackson PK, Frydman J, Andino R. PMID: 34852237; PMCID: PMC8598942.
      View in: PubMed   Mentions:
    3. AI-driven prediction of SARS-CoV-2 variant binding trends from atomistic simulations. Eur Phys J E Soft Matter. 2021 Oct 06; 44(10):123. Capponi S, Wang S, Navarro EJ, Bianco S. PMID: 34613523; PMCID: PMC8493367.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome. PLoS Pathog. 2021 09; 17(9):e1009277. Shirogane Y, Rousseau E, Voznica J, Xiao Y, Su W, Catching A, Whitfield ZJ, Rouzine IM, Bianco S, Andino R. PMID: 34570820; PMCID: PMC8496841.
      View in: PubMed   Mentions:    Fields:    
    5. Examining the interplay between face mask usage, asymptomatic transmission, and social distancing on the spread of COVID-19. Sci Rep. 2021 08 06; 11(1):15998. Catching A, Capponi S, Yeh MT, Bianco S, Andino R. PMID: 34362936; PMCID: PMC8346500.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    6. Optimal periodic closure for minimizing risk in emerging disease outbreaks. PLoS One. 2021; 16(1):e0244706. Hindes J, Bianco S, Schwartz IB. PMID: 33406106; PMCID: PMC7787468.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansPHPublic Health
    7. Non-random distribution of vacuoles in Schizosaccharomyces pombe. Phys Biol. 2020 10 09; 17(6):065004. Chadwick WL, Biswas SK, Bianco S, Chan YM. PMID: 33035200.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    8. Mapping Attenuation Determinants in Enterovirus-D68. Viruses. 2020 08 08; 12(8). Yeh MT, Capponi S, Catching A, Bianco S, Andino R. PMID: 32784424; PMCID: PMC7472100.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    9. Annotation-free learning of plankton for classification and anomaly detection. Sci Rep. 2020 07 22; 10(1):12142. Pastore VP, Zimmerman TG, Biswas SK, Bianco S. PMID: 32699302; PMCID: PMC7376023.
      View in: PubMed   Mentions: 1     Fields:    
    10. Non-random distribution of vacuoles inSchizosaccharomyces pombe. Phys Biol. 2020 Jul 10. Chadwick W, Biswas S, Bianco S, Chan YM. PMID: 32650322.
      View in: PubMed   Mentions:    Fields:    
    11. Towards computer-aided design of cellular structure. Phys Biol. 2020 02 25; 17(2):023001. Bianco S, Chan YM, Marshall WF. PMID: 31952048.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    12. a tool for rapid, flexible, crowd-based annotation of images. Nat Methods. 2018 08; 15(8):587-590. Hughes AJ, Mornin JD, Biswas SK, Beck LE, Bauer DP, Raj A, Bianco S, Gartner ZJ. PMID: 30065368; PMCID: PMC8863499.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimals
    13. RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence. Cell Host Microbe. 2017 09 13; 22(3):420. Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R. PMID: 28910639; PMCID: PMC5807061.
      View in: PubMed   Mentions: 4  
    14. Hamiltonian Analysis of Subcritical Stochastic Epidemic Dynamics. Comput Math Methods Med. 2017; 2017:4253167. Worden L, Schwartz IB, Bianco S, Ackley SF, Lietman TM, Porco TC. PMID: 28932256; PMCID: PMC5592420.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    15. RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence. Cell Host Microbe. 2016 Apr 13; 19(4):493-503. Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R. PMID: 27078068; PMCID: PMC4840895.
      View in: PubMed   Mentions: 48  Translation:HumansAnimalsCells
    16. Statistical Mechanics and Thermodynamics of Viral Evolution. PLoS One. 2015; 10(9):e0137482. Jones BA, Lessler J, Bianco S, Kaufman JH. PMID: 26422205; PMCID: PMC4589373.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    17. Costs and benefits of mutational robustness in RNA viruses. Cell Rep. 2014 Aug 21; 8(4):1026-36. Stern A, Bianco S, Yeh MT, Wright C, Butcher K, Tang C, Nielsen R, Andino R. PMID: 25127138; PMCID: PMC4142091.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    18. Generic Properties of Random Gene Regulatory Networks. Quant Biol. 2013 Dec; 1(4):253-260. Li Z, Bianco S, Zhang Z, Tang C. PMID: 25328770; PMCID: PMC4198180.
      View in: PubMed   Mentions: 6  
    19. Converging towards the optimal path to extinction. J R Soc Interface. 2011 Dec 07; 8(65):1699-707. Schwartz IB, Forgoston E, Bianco S, Shaw LB. PMID: 21571943; PMCID: PMC3203485.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    20. Maximal sensitive dependence and the optimal path to epidemic extinction. Bull Math Biol. 2011 Mar; 73(3):495-514. Forgoston E, Bianco S, Shaw LB, Schwartz IB. PMID: 20352495; PMCID: PMC3056896.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansPHPublic Health
    21. Epidemics with multistrain interactions: the interplay between cross immunity and antibody-dependent enhancement. Chaos. 2009 Dec; 19(4):043123. Bianco S, Shaw LB, Schwartz IB. PMID: 20059219; PMCID: PMC4108630.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsPHPublic Health
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