Soeren Mueller, PhD

TitlePostdoctoral Scholar
InstitutionUniversity of California San Francisco
DepartmentNeurological Surgery
Address1450 Third St
San Francisco CA 94158
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    Collapse Biography 
    Collapse Awards and Honors
    Society for Neuro-Oncology2016Adult Basic Research Award
    American Academy of Neurology2017Critical advance in the field of neuroscience
    European Association for Cancer Research2018EACR25 Meeting Bursary

    Collapse Research 
    Collapse Research Activities and Funding
    Identification of novel medulloblastoma therapy targets using single-cell RNA sequencing
    Burroughs Wellcome Fund 1018759Jun 1, 2018 - Dec 31, 2019
    Role: Principal Investigator

    Collapse ORNG Applications 
    Collapse Featured Publications
    Collapse Websites
    Collapse Featured Videos

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Müller S, Cho A, Liu SJ, Lim DA, Diaz A. CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones. Bioinformatics. 2018 Apr 20. PMID: 29897414.
      View in: PubMed
    2. Müller S, Agnihotri S, Shoger KE, Myers MI, Smith N, Chaparala S, Villanueva CR, Chattopadhyay A, Lee AV, Butterfield LH, Diaz A, Okada H, Pollack IF, Kohanbash G. Peptide vaccine immunotherapy biomarkers and response patterns in pediatric gliomas. JCI Insight. 2018 Apr 05; 3(7). PMID: 29618666.
      View in: PubMed
    3. Müller S, Kohanbash G, Liu SJ, Alvarado B, Carrera D, Bhaduri A, Watchmaker PB, Yagnik G, Di Lullo E, Malatesta M, Amankulor NM, Kriegstein AR, Lim DA, Aghi M, Okada H, Diaz A. Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment. Genome Biol. 2017 Dec 20; 18(1):234. PMID: 29262845.
      View in: PubMed
    4. Bartlett TE, Müller S, Diaz A. Single-cell Co-expression Subnetwork Analysis. Sci Rep. 2017 Nov 08; 7(1):15066. PMID: 29118406.
      View in: PubMed
    5. Müller S, Diaz A. Single-Cell mRNA Sequencing in Cancer Research: Integrating the Genomic Fingerprint. Front Genet. 2017; 8:73. PMID: 28620412.
      View in: PubMed
    6. Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Mol Syst Biol. 2016 Nov 25; 12(11):889. PMID: 27888226.
      View in: PubMed
    7. Afonso-Grunz F, Müller S. Principles of miRNA-mRNA interactions: beyond sequence complementarity. Cell Mol Life Sci. 2015 Aug; 72(16):3127-41. PMID: 26037721.
      View in: PubMed
    8. Müller S, Raulefs S, Bruns P, Afonso-Grunz F, Plötner A, Thermann R, Jäger C, Schlitter AM, Kong B, Regel I, Roth WK, Rotter B, Hoffmeier K, Kahl G, Koch I, Theis FJ, Kleeff J, Winter P, Michalski CW. Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer. Mol Cancer. 2015 Apr 25; 14:94. PMID: 25910082; PMCID: PMC4417536.
    9. Fittschen M, Lastres-Becker I, Halbach MV, Damrath E, Gispert S, Azizov M, Walter M, Müller S, Auburger G. Genetic ablation of ataxin-2 increases several global translation factors in their transcript abundance but decreases translation rate. Neurogenetics. 2015 Jul; 16(3):181-92. PMID: 25721894; PMCID: PMC4475250.
    10. Müller S. In silico analysis of regulatory networks underlines the role of miR-10b-5p and its target BDNF in huntington's disease. Transl Neurodegener. 2014; 3:17. PMID: 25210621; PMCID: PMC4160136.
    11. Müller S, Rycak L, Afonso-Grunz F, Winter P, Zawada AM, Damrath E, Scheider J, Schmäh J, Koch I, Kahl G, Rotter B. APADB: a database for alternative polyadenylation and microRNA regulation events. Database (Oxford). 2014; 2014. PMID: 25052703; PMCID: PMC4105710.
    12. Müller S, Nowak K. Exploring the miRNA-mRNA regulatory network in clear cell renal cell carcinomas by next-generation sequencing expression profiles. Biomed Res Int. 2014; 2014:948408. PMID: 24977165; PMCID: PMC4054612.
    13. Zawada AM, Rogacev KS, Müller S, Rotter B, Winter P, Fliser D, Heine GH. Massive analysis of cDNA Ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney disease. Epigenetics. 2014 Jan; 9(1):161-72. PMID: 24184689; PMCID: PMC3928179.
    14. Müller S, Rycak L, Winter P, Kahl G, Koch I, Rotter B. omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data. Bioinformatics. 2013 Oct 15; 29(20):2651-2. PMID: 23946503.
      View in: PubMed