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A novel reporter for helicase activity in translation uncovers DDX3X interactions. RNA. 2024 Jul 16; 30(8):1041-1057.
Wilkins KC, Schroeder T, Gu S, Revalde JL, Floor SN. PMID: 38697667; PMCID: PMC11251518.
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PubMed Mentions: Fields:
Translation:
HumansCells
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Genome-wide quantification of RNA flow across subcellular compartments reveals determinants of the mammalian transcript life cycle. Mol Cell. 2024 Jul 25; 84(14):2765-2784.e16.
Ietswaart R, Smalec BM, Xu A, Choquet K, McShane E, Jowhar ZM, Guegler CK, Baxter-Koenigs AR, West ER, Fu BXH, Gilbert L, Floor SN, Churchman LS. PMID: 38964322; PMCID: PMC11315470.
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PubMed Mentions:
4 Fields:
Translation:
HumansAnimalsCells
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IGHMBP2 deletion suppresses translation and activates the integrated stress response. Life Sci Alliance. 2024 Aug; 7(8).
Park J, Desai H, Liboy-Lugo JM, Gu S, Jowhar Z, Xu A, Floor SN. PMID: 38803225; PMCID: PMC11109757.
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Translation:
HumansCells
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Protein-protein interactions with G3BPs drive stress granule condensation and gene expression changes under cellular stress. bioRxiv. 2024 Feb 07.
Liboy-Lugo JM, Espinoza CA, Sheu-Gruttadauria J, Park JE, Xu A, Jowhar Z, Gao AL, Carmona-Negrón JA, Wittmann T, Jura N, Floor SN. PMID: 38370785; PMCID: PMC10871250.
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A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X. Mol Syst Biol. 2024 Mar; 20(3):276-290.
Jowhar Z, Xu A, Venkataramanan S, Dossena F, Hoye ML, Silver DL, Floor SN, Calviello L. PMID: 38273160; PMCID: PMC10912769.
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PubMed Mentions: Fields:
Translation:
Animals
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IGHMBP2 deletion suppresses translation and activates the integrated stress response. bioRxiv. 2023 Dec 12.
Park JE, Desai H, Liboy-Lugo J, Gu S, Jowhar Z, Xu A, Floor SN. PMID: 38168189; PMCID: PMC10760061.
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A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X. bioRxiv. 2023 Nov 23.
Jowhar Z, Xu A, Venkataramanan S, Dossena F, Hoye ML, Silver DL, Floor SN, Calviello L. PMID: 37214951; PMCID: PMC10197686.
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RNA molecular recording with an engineered RNA deaminase. Nat Methods. 2023 Dec; 20(12):1887-1899.
Lin Y, Kwok S, Hein AE, Thai BQ, Alabi Y, Ostrowski MS, Wu K, Floor SN. PMID: 37857907.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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A Legionella toxin exhibits tRNA mimicry and glycosyl transferase activity to target the translation machinery and trigger a ribotoxic stress response. Nat Cell Biol. 2023 Nov; 25(11):1600-1615.
Subramanian A, Wang L, Moss T, Voorhies M, Sangwan S, Stevenson E, Pulido EH, Kwok S, Chalkley RJ, Li KH, Krogan NJ, Swaney DL, Burlingame AL, Floor SN, Sil A, Walter P, Mukherjee S. PMID: 37857833; PMCID: PMC11005034.
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1 Fields:
Translation:
HumansCells
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PubMed Mentions:
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Determinants of DDX3X sensitivity uncovered using a helicase activity in translation reporter. bioRxiv. 2023 Sep 14.
Wilkins KC, Schroeder T, Gu S, Revalde JL, Floor SN. PMID: 37745530; PMCID: PMC10515938.
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Dynamic regulation of messenger RNA structure controls translation. Nature. 2023 Sep; 621(7978):259-260.
Lin Y, Floor SN. PMID: 37674086.
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The variant landscape and function of DDX3X in cancer and neurodevelopmental disorders. Trends Mol Med. 2023 09; 29(9):726-739.
Gadek M, Sherr EH, Floor SN. PMID: 37422363.
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PubMed Mentions:
4 Fields:
Translation:
Humans
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Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression. Cell Rep. 2023 06 27; 42(6):112642.
Campbell AE, Dyle MC, Albanese R, Matheny T, Sudheendran K, Cortázar MA, Forman T, Fu R, Gillen AE, Caruthers MH, Floor SN, Calviello L, Jagannathan S. PMID: 37314931; PMCID: PMC10592454.
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PubMed Mentions:
5 Fields:
Translation:
HumansCells
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Aberrant cortical development is driven by impaired cell cycle and translational control in a DDX3X syndrome model. Elife. 2022 06 28; 11.
Hoye ML, Calviello L, Poff AJ, Ejimogu NE, Newman CR, Montgomery MD, Ou J, Floor SN, Silver DL. PMID: 35762573; PMCID: PMC9239684.
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PubMed Mentions:
15 Fields:
Translation:
Animals
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Lysate and cell-based assays to probe the translational role of RNA helicases. Methods Enzymol. 2022; 673:141-168.
Wilkins KC, Venkataramanan S, Floor SN. PMID: 35965005.
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PubMed Mentions:
2 Fields:
Translation:
Cells
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SRSF1 governs progenitor-specific alternative splicing to maintain adult epithelial tissue homeostasis and renewal. Dev Cell. 2022 03 14; 57(5):624-637.e4.
Yu T, Cazares O, Tang AD, Kim HY, Wald T, Verma A, Liu Q, Barcellos-Hoff MH, Floor SN, Jung HS, Brooks AN, Klein OD. PMID: 35202586; PMCID: PMC8974236.
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PubMed Mentions:
8 Fields:
Translation:
AnimalsCells
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The role of G3BP stress granules assembly in cell fitness during the integrated stress response. Biophysical Journal. 2022 Feb 1; 121(3):497a.
Liboy-Lugo LJ, Sheu-Gruttadauria SJ, Floor FS. .
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Mapping the regulatory landscape of membraneless organelle assembly and dynamics. Biophysical Journal. 2022 Feb 1; 121(3):293a-294a.
Sheu-Gruttadauria SJ, Yan YX, Stuurman SN, Floor FS, Vale VR. .
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Determining the impact of stress granule composition on cell survival. Biophysical Journal. 2022 Feb 1; 121(3):210a.
Park PJ, Venkataramanan VS, Liboy-Lugo LJ, Blackwell BV, Floor FS. .
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The impact of periodic stress on stress granules in human cells. Biophysical Journal. 2022 Feb 1; 121(3):211a.
Gao GA, Liboy-Lugo LJ, Park PJ, Floor FS. .
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Directed evolution of the rRNA methylating enzyme Cfr reveals molecular basis of antibiotic resistance. Elife. 2022 01 11; 11.
Tsai K, Stojkovic V, Noda-Garcia L, Young ID, Myasnikov AG, Kleinman J, Palla A, Floor SN, Frost A, Fraser JS, Tawfik DS, Fujimori DG. PMID: 35015630; PMCID: PMC8752094.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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DDX3X and DDX3Y are redundant in protein synthesis. RNA. 2021 12; 27(12):1577-1588.
Venkataramanan S, Gadek M, Calviello L, Wilkins K, Floor SN. PMID: 34535544; PMCID: PMC8594478.
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PubMed Mentions:
25 Fields:
Translation:
HumansCells
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DDX3 depletion represses translation of mRNAs with complex 5' UTRs. Nucleic Acids Res. 2021 05 21; 49(9):5336-5350.
Calviello L, Venkataramanan S, Rogowski KJ, Wyler E, Wilkins K, Tejura M, Thai B, Krol J, Filipowicz W, Landthaler M, Floor SN. PMID: 33905506; PMCID: PMC8136831.
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PubMed Mentions:
38 Fields:
Translation:
HumansCells
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Control of ribosomal protein synthesis by the Microprocessor complex. Sci Signal. 2021 02 23; 14(671).
Jiang X, Prabhakar A, Van der Voorn SM, Ghatpande P, Celona B, Venkataramanan S, Calviello L, Lin C, Wang W, Black BL, Floor SN, Lagna G, Hata A. PMID: 33622983; PMCID: PMC8012103.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Dual targeting of DDX3 and eIF4A by the translation inhibitor rocaglamide A. Cell Chem Biol. 2021 04 15; 28(4):475-486.e8.
Chen M, Asanuma M, Takahashi M, Shichino Y, Mito M, Fujiwara K, Saito H, Floor SN, Ingolia NT, Sodeoka M, Dodo K, Ito T, Iwasaki S. PMID: 33296667; PMCID: PMC8052261.
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PubMed Mentions:
24 Fields:
Translation:
HumansCells
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A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature. 2020 07; 583(7816):459-468.
Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, White KM, O'Meara MJ, Rezelj VV, Guo JZ, Swaney DL, Tummino TA, Hüttenhain R, Kaake RM, Richards AL, Tutuncuoglu B, Foussard H, Batra J, Haas K, Modak M, Kim M, Haas P, Polacco BJ, Braberg H, Fabius JM, Eckhardt M, Soucheray M, Bennett MJ, Cakir M, McGregor MJ, Li Q, Meyer B, Roesch F, Vallet T, Mac Kain A, Miorin L, Moreno E, Naing ZZC, Zhou Y, Peng S, Shi Y, Zhang Z, Shen W, Kirby IT, Melnyk JE, Chorba JS, Lou K, Dai SA, Barrio-Hernandez I, Memon D, Hernandez-Armenta C, Lyu J, Mathy CJP, Perica T, Pilla KB, Ganesan SJ, Saltzberg DJ, Rakesh R, Liu X, Rosenthal SB, Calviello L, Venkataramanan S, Liboy-Lugo J, Lin Y, Huang XP, Liu Y, Wankowicz SA, Bohn M, Safari M, Ugur FS, Koh C, Savar NS, Tran QD, Shengjuler D, Fletcher SJ, O'Neal MC, Cai Y, Chang JCJ, Broadhurst DJ, Klippsten S, Sharp PP, Wenzell NA, Kuzuoglu-Ozturk D, Wang HY, Trenker R, Young JM, Cavero DA, Hiatt J, Roth TL, Rathore U, Subramanian A, Noack J, Hubert M, Stroud RM, Frankel AD, Rosenberg OS, Verba KA, Agard DA, Ott M, Emerman M, Jura N, von Zastrow M, Verdin E, Ashworth A, Schwartz O, d'Enfert C, Mukherjee S, Jacobson M, Malik HS, Fujimori DG, Ideker T, Craik CS, Floor SN, Fraser JS, Gross JD, Sali A, Roth BL, Ruggero D, Taunton J, Kortemme T, Beltrao P, Vignuzzi M, García-Sastre A, Shokat KM, Shoichet BK, Krogan NJ. PMID: 32353859; PMCID: PMC7431030.
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A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. bioRxiv. 2020 Mar 22.
Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, O'Meara MJ, Guo JZ, Swaney DL, Tummino TA, Hüttenhain R, Kaake RM, Richards AL, Tutuncuoglu B, Foussard H, Batra J, Haas K, Modak M, Kim M, Haas P, Polacco BJ, Braberg H, Fabius JM, Eckhardt M, Soucheray M, Bennett MJ, Cakir M, McGregor MJ, Li Q, Naing ZZC, Zhou Y, Peng S, Kirby IT, Melnyk JE, Chorba JS, Lou K, Dai SA, Shen W, Shi Y, Zhang Z, Barrio-Hernandez I, Memon D, Hernandez-Armenta C, Mathy CJP, Perica T, Pilla KB, Ganesan SJ, Saltzberg DJ, Ramachandran R, Liu X, Rosenthal SB, Calviello L, Venkataramanan S, Lin Y, Wankowicz SA, Bohn M, Trenker R, Young JM, Cavero D, Hiatt J, Roth T, Rathore U, Subramanian A, Noack J, Hubert M, Roesch F, Vallet T, Meyer B, White KM, Miorin L, Agard D, Emerman M, Ruggero D, García-Sastre A, Jura N, von Zastrow M, Taunton J, Schwartz O, Vignuzzi M, d'Enfert C, Mukherjee S, Jacobson M, Malik HS, Fujimori DG, Ideker T, Craik CS, Floor S, Fraser JS, Gross J, Sali A, Kortemme T, Beltrao P, Shokat K, Shoichet BK, Krogan NJ. PMID: 32511329; PMCID: PMC7239059.
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30
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Pathogenic DDX3X Mutations Impair RNA Metabolism and Neurogenesis during Fetal Cortical Development. Neuron. 2020 05 06; 106(3):404-420.e8.
Lennox AL, Hoye ML, Jiang R, Johnson-Kerner BL, Suit LA, Venkataramanan S, Sheehan CJ, Alsina FC, Fregeau B, Aldinger KA, Moey C, Lobach I, Afenjar A, Babovic-Vuksanovic D, Bézieau S, Blackburn PR, Bunt J, Burglen L, Campeau PM, Charles P, Chung BHY, Cogné B, Curry C, D'Agostino MD, Di Donato N, Faivre L, Héron D, Innes AM, Isidor B, Keren B, Kimball A, Klee EW, Kuentz P, Küry S, Martin-Coignard D, Mirzaa G, Mignot C, Miyake N, Matsumoto N, Fujita A, Nava C, Nizon M, Rodriguez D, Blok LS, Thauvin-Robinet C, Thevenon J, Vincent M, Ziegler A, Dobyns W, Richards LJ, Barkovich AJ, Floor SN, Silver DL, Sherr EH. PMID: 32135084; PMCID: PMC7331285.
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PubMed Mentions:
74 Fields:
Translation:
HumansAnimalsCells
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PTBP1 mRNA isoforms and regulation of their translation. RNA. 2019 10; 25(10):1324-1336.
Arake de Tacca LM, Pulos-Holmes MC, Floor SN, Cate JHD. PMID: 31263002; PMCID: PMC6800477.
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PubMed Mentions:
12 Fields:
Translation:
HumansCells
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The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA. Mol Cell. 2019 02 21; 73(4):738-748.e9.
Iwasaki S, Iwasaki W, Takahashi M, Sakamoto A, Watanabe C, Shichino Y, Floor SN, Fujiwara K, Mito M, Dodo K, Sodeoka M, Imataka H, Honma T, Fukuzawa K, Ito T, Ingolia NT. PMID: 30595437; PMCID: PMC6386617.
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PubMed Mentions:
77 Fields:
Translation:
HumansAnimalsCells
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CRISPR-Cas9 genome editing in human cells occurs via the Fanconi anemia pathway. Nat Genet. 2018 08; 50(8):1132-1139.
Richardson CD, Kazane KR, Feng SJ, Zelin E, Bray NL, Schäfer AJ, Floor SN, Corn JE. PMID: 30054595.
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PubMed Mentions:
123 Fields:
Translation:
HumansCells
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The Traffic Jam: Polyamine Prevalence Pauses Protein Production. Mol Cell. 2018 04 19; 70(2):191-192.
Venkataramanan S, Floor SN. PMID: 29677487.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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Move Over, Genomes: Here Comes Transcriptome Engineering. CRISPR J. 2018 04; 1:126-127.
Thai B, Floor SN. PMID: 31021197.
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PubMed Mentions:
1 Fields:
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Widespread Translational Remodeling during Human Neuronal Differentiation. Cell Rep. 2017 Nov 14; 21(7):2005-2016.
Blair JD, Hockemeyer D, Doudna JA, Bateup HS, Floor SN. PMID: 29141229; PMCID: PMC5759054.
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PubMed Mentions:
72 Fields:
Translation:
HumansCells
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Widespread translational remodeling during human neuronal differentiation. bioRxiv preprint. 2017.
John D Blair, Dirk Hockemeyer, Jennifer A Doudna, Helen S Bateup, Stephen N Floor. . View Publication.
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CRISPR-Cas9 Genome Editing In Human Cells Works Via The Fanconi Anemia Pathway. bioRxiv preprint. 2017.
Chris D. Richardson, Katelynn R. Kazane, Sharon J. Feng, Nicholas L. Bray, Axel J. Schaefer, Stephen Floor, Jacob Corn. View Publication.
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Efficient genome editing in the mouse brain by local delivery of engineered Cas9 ribonucleoprotein complexes. Nat Biotechnol. 2017 05; 35(5):431-434.
Staahl BT, Benekareddy M, Coulon-Bainier C, Banfal AA, Floor SN, Sabo JK, Urnes C, Munares GA, Ghosh A, Doudna JA. PMID: 28191903; PMCID: PMC6649674.
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PubMed Mentions:
149 Fields:
Translation:
AnimalsCells
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Rocaglates convert DEAD-box protein eIF4A into a sequence-selective translational repressor. Nature. 2016 06 23; 534(7608):558-61.
Iwasaki S, Floor SN, Ingolia NT. PMID: 27309803; PMCID: PMC4946961.
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PubMed Mentions:
148 Fields:
Translation:
HumansCells
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Medulloblastoma-associated DDX3 variant selectively alters the translational response to stress. Oncotarget. 2016 May 10; 7(19):28169-82.
Oh S, Flynn RA, Floor SN, Purzner J, Martin L, Do BT, Schubert S, Vaka D, Morrissy S, Li Y, Kool M, Hovestadt V, Jones DT, Northcott PA, Risch T, Warnatz HJ, Yaspo ML, Adams CM, Leib RD, Breese M, Marra MA, Malkin D, Lichter P, Doudna JA, Pfister SM, Taylor MD, Chang HY, Cho YJ. PMID: 27058758; PMCID: PMC5053718.
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PubMed Mentions:
42 Fields:
Translation:
HumansCells
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Tunable protein synthesis by transcript isoforms in human cells. Elife. 2016 Jan 06; 5.
Floor SN, Doudna JA. PMID: 26735365; PMCID: PMC4764583.
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PubMed Mentions:
140 Fields:
Translation:
HumansCells
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Analog sensitive chemical inhibition of the DEAD-box protein DDX3. Protein Sci. 2016 Mar; 25(3):638-49.
Floor SN, Barkovich KJ, Condon KJ, Shokat KM, Doudna JA. PMID: 26650549; PMCID: PMC4815421.
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PubMed Mentions:
6 Fields:
Translation:
HumansCells
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Get in LINE: Competition for Newly Minted Retrotransposon Proteins at the Ribosome. Mol Cell. 2015 Dec 03; 60(5):712-714.
Floor SN, Doudna JA. PMID: 26638173.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3. J Biol Chem. 2016 Jan 29; 291(5):2412-21.
Floor SN, Condon KJ, Sharma D, Jankowsky E, Doudna JA. PMID: 26598523; PMCID: PMC4732223.
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PubMed Mentions:
44 Fields:
Translation:
HumansAnimalsCells
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Engineering Inhibitor Specificity in the Dead-Box Protein Family. Biophysical Journal. 2014 Jan 1; 106(2):495a-496a.
Condon CK, Floor FS, Doudna DJ. .
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Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme Dcp2. Structure. 2013 Sep 03; 21(9):1571-80.
Aglietti RA, Floor SN, McClendon CL, Jacobson MP, Gross JD. PMID: 23911090; PMCID: PMC3769517.
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PubMed Mentions:
16 Fields:
Translation:
AnimalsCells
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Preliminary in vitro functional analysis of the DEAD-box protein DDX3. The FASEB Journal. 2012 Apr 1; 26:947.2-947.2.
Floor FS, Smith SA, Zhou ZK, Doudna DJ. .
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Interdomain dynamics and coactivation of the mRNA decapping enzyme Dcp2 are mediated by a gatekeeper tryptophan. Proc Natl Acad Sci U S A. 2012 Feb 21; 109(8):2872-7.
Floor SN, Borja MS, Gross JD. PMID: 22323607; PMCID: PMC3286934.
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PubMed Mentions:
26 Fields:
Translation:
AnimalsCells
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A split active site couples cap recognition by Dcp2 to activation. Nat Struct Mol Biol. 2010 Sep; 17(9):1096-101.
Floor SN, Jones BN, Hernandez GA, Gross JD. PMID: 20711189; PMCID: PMC2933276.
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PubMed Mentions:
37 Fields:
Translation:
HumansAnimalsCells
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Ligand-induced conformational heterogeneity of cytochrome P450 CYP119 identified by 2D NMR spectroscopy with the unnatural amino acid (13)C-p-methoxyphenylalanine. J Am Chem Soc. 2008 Dec 03; 130(48):16168-9.
Lampe JN, Floor SN, Gross JD, Nishida CR, Jiang Y, Trnka MJ, Ortiz de Montellano PR. PMID: 18998650; PMCID: PMC2645923.
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PubMed Mentions:
20 Fields:
Translation:
Cells
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Control of mRNA decapping by Dcp2: An open and shut case? RNA Biol. 2008 Oct-Dec; 5(4):189-92.
Floor SN, Jones BN, Gross JD. PMID: 18971632; PMCID: PMC2699264.
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PubMed Mentions:
7 Fields:
Translation:
Animals
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SRP RNA controls a conformational switch regulating the SRP-SRP receptor interaction. Nat Struct Mol Biol. 2008 Sep; 15(9):916-23.
Neher SB, Bradshaw N, Floor SN, Gross JD, Walter P. PMID: 19172744; PMCID: PMC2767265.
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PubMed Mentions:
22 Fields:
Translation:
Cells
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mRNA decapping is promoted by an RNA-binding channel in Dcp2. Mol Cell. 2008 Feb 15; 29(3):324-36.
Deshmukh MV, Jones BN, Quang-Dang DU, Flinders J, Floor SN, Kim C, Jemielity J, Kalek M, Darzynkiewicz E, Gross JD. PMID: 18280238.
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PubMed Mentions:
62 Fields:
Translation:
AnimalsCells
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Simulated Versus Observed Cluster Eccentricity Evolution. The Astrophysical Journal. 2004 Aug 10; 611(1):153-157.
Floor FS, Melott MA, Motl MP. .
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Simulated versus observed cluster eccentricity evolution. The Astrophysical Journal. 2004; 611:153.
Floor, S. N., Melott, A. L., & Motl, P. M.
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Eccentricity Evolution in Simulated Galaxy Clusters. The Astrophysical Journal. 2003 Jul 10; 591(2):741-748.
Floor FS, Melott MA, Miller MC, Bryan BG. .
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Eccentricity evolution in simulated galaxy
clusters. The Astrophysical Journal. 2003; 591:741.
Floor, S. N., Melott, A. L., Miller, C. J., & Bryan, G. L.
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Empirical investigation of extreme single-particle behavior of nuclear quadrupole moments in highly collective A~150 superdeformed bands. AIP Conference Proceedings. 2002 Apr 2; 610(1):825-829.
Clark CS, Hackman HG, Janssens JR, Clark CR, Fallon FP, Floor FS, Lane LG, Macchiavelli MA, Norris NJ, Sanders SS, Svensson SC. .
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Empirical investigation of extreme single-particle behavior of nuclear quadrupole moments in highly collective A approximately 150 superdeformed bands. Phys Rev Lett. 2001 Oct 22; 87(17):172503.
Clark ST, Hackman G, Janssens RV, Clark RM, Fallon P, Floor SN, Lane GJ, Macchiavelli AO, Norris J, Sanders SJ, Svensson CE. PMID: 11690269.
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