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Swati Kaushik, PhD

Title(s)Specialist, Bioengineering
SchoolSchool of Pharmacy
Address1450 Third St
San Francisco CA 94158
Phone415-476-3425
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    Collapse Biography 
    Collapse Education and Training
    National Center For Biological SciencesPhD2014Computational biology
    University of PuneMS2008Bioinformatics
    Collapse Awards and Honors
    DBT, India2008  - 2013Department of Biotechnology, PhD fellowship
    NCBS-TIFR2013  - 2014Bridging fellowship

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. ER alpha selective chromone, isoxazolylchromones, induces ROS-mediated cell death without autophagy. Chem Biol Drug Des. 2019 07; 94(1):1352-1367. Kaushik S, Sanawar R, Lekshmi A, Chandrasekhar L, Nair M, Bhatnagar S, Santhoshkumar TR. PMID: 31066219.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Aurora kinase A drives the evolution of resistance to third-generation EGFR inhibitors in lung cancer. Nat Med. 2019 01; 25(1):111-118. Shah KN, Bhatt R, Rotow J, Rohrberg J, Olivas V, Wang VE, Hemmati G, Martins MM, Maynard A, Kuhn J, Galeas J, Donnella HJ, Kaushik S, Ku A, Dumont S, Krings G, Haringsma HJ, Robillard L, Simmons AD, Harding TC, McCormick F, Goga A, Blakely CM, Bivona TG, Bandyopadhyay S. PMID: 30478424.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    3. Integration of Tumor Genomic Data with Cell Lines Using Multi-dimensional Network Modules Improves Cancer Pharmacogenomics. Cell Syst. 2018 11 28; 7(5):526-536.e6. Webber JT, Kaushik S, Bandyopadhyay S. PMID: 30414925.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    4. A tyrosine kinase interactome reveals network states that guide the use of targeted therapies in cancer. A tyrosine kinase interactome reveals network states that guide the use of targeted therapies in cancer. 2018; 78(13). Kaushik S , Jang Gwendolyn , Hu Gwendolyn , Shah Khyati , Zhao Xin, Jascur John , Von Dollen John , Verschueren Erik , Johnson Jeffrey , Krogan Nevan, Bandyopadhyay Sourav. View Publication.
    5. A Quantitative Chemotherapy Genetic Interaction Map Reveals Factors Associated with PARP Inhibitor Resistance. Cell Rep. 2018 Apr 17; 23(3):918-929. Hu HM, Zhao X, Kaushik S, Robillard L, Barthelet A, Lin KK, Shah KN, Simmons AD, Raponi M, Harding TC, Bandyopadhyay S. PMID: 29669295.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    6. Nonsteroidal estrogen receptor isoform-selective biphenyls. Chem Biol Drug Des. 2018 02; 91(2):620-630. Bhatnagar S, Soni A, Kaushik S, Rikhi M, Santhoshkumar TR, Jayaram B. PMID: 29052968.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    7. Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space. Bioinformatics. 2016 Feb 01; 32(3):338-44. Kaushik S, Nair AG, Mutt E, Subramanian HP, Sowdhamini R. PMID: 26454276.
      View in: PubMed   Mentions:    Fields:    
    8. Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties. BMC Plant Biol. 2015 Aug 28; 15:212. Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N, Lingu CS, Mahita J, Malarini R, Malhotra S, Malini M, Mathew OK, Mutt E, Naika M, Nitish S, Pasha SN, Raghavender US, Rajamani A, Shilpa S, Shingate PN, Singh HR, Sukhwal A, Sunitha MS, Sumathi M, Ramaswamy S, Gowda M, Sowdhamini R. PMID: 26315624.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    9. Computational Analysis of the Domain Architecture and Substrate-Gating Mechanism of Prolyl Oligopeptidases from Shewanella woodyi and Identification of Probable Lead Molecules. Interdiscip Sci. 2016 Sep; 8(3):284-93. Patil P, Skariyachan S, Mutt E, Kaushik S. PMID: 26298583.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    10. Computational analysis of the domain architecture and substrate-gating mechanism of prolyl oligopeptidases from Shewanella woodyi and identification probable lead molecules. Interdiscip Sci. 2015 Feb 06. Patil P, Skariyachan S, Mutt E, Kaushik S. PMID: 25663117.
      View in: PubMed   Mentions:    Fields:    
    11. Distribution, classification, domain architectures and evolution of prolyl oligopeptidases in prokaryotic lineages. BMC Genomics. 2014 Nov 18; 15:985. Kaushik S, Sowdhamini R. PMID: 25407321.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    12. Decoding the structural events in substrate-gating mechanism of eukaryotic prolyl oligopeptidase using normal mode analysis and molecular dynamics simulations. Proteins. 2014 Jul; 82(7):1428-43. Kaushik S, Etchebest C, Sowdhamini R. PMID: 24500901.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    13. Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage. PLoS One. 2013; 8(2):e56449. Kaushik S, Mutt E, Chellappan A, Sankaran S, Srinivasan N, Sowdhamini R. PMID: 23437136.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    14. Structural analysis of prolyl oligopeptidases using molecular docking and dynamics: insights into conformational changes and ligand binding. PLoS One. 2011; 6(11):e26251. Kaushik S, Sowdhamini R. PMID: 22132071.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    15. A quantitative chemotherapy genetic interaction map reveals new factors associated with PARP inhibitor resistance. bioRxiv, 171918. Hsien-Ming Hu, Xin Zhao, Swati Kaushik, Lilliane Robillard, Antoine Barthelet, Kevin K Lin, Andy Simmons, Mitch Raponi, Thomas C Harding, Sourav Bandyopadhyay. View Publication.
    16. Connecting tumor genomics with therapeutics through multi-dimensional network modules. bioRxiv, 083410. View Publication.
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