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Thomas James, PhD

TitleProfessor
InstitutionUniversity of California San Francisco
DepartmentPharmaceutical Chemistry
Address600 16th St
San Francisco CA 94158
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    Other Positions
    TitleInterim Director, Molecular Design Institute


    Collapse Biography 
    Collapse Awards and Honors
    University of New Mexico, Albuquerque1962  - 1965University Roll of Distinction
    University of New Mexico, Albuquerque1962  - 1965University Honor Roll
    University of New Mexico, Albuquerque1964Kappa Mu Epsilon (Mathematics Honorary)
    Bundesrepublik Deutschlan1964German Award
    University of New Mexico, Albuquerque1964Phi Kappa Phi (Scholastic Honorary)
    University of New Mexico, Albuquerque1965Phi Beta Kappa (Scholastic Honorary)

    Collapse Research 
    Collapse Research Activities and Funding
    Development and Application of In-Cell NMR Techniques
    NIH/NIGMS R21GM066039Aug 1, 2002 - Jul 31, 2005
    Role: Principal Investigator
    ACQUISITION OF AN 800 MHZ NMR SPECTROMETER
    NIH/NCRR S10RR015748Mar 15, 2001 - Sep 14, 2003
    Role: Principal Investigator
    RNA STRUCTURE IN AGILE LOCI OF RIBOSOME AND RETROVIRUSES
    NIH/FIC R03TW001465Feb 9, 2001 - Jan 31, 2005
    Role: Principal Investigator
    THERMODYNAMICS OF PROTEIN-DNA &LIGAND-DNA COMPLEXES
    NIH/FIC R03TW001234Feb 1, 2000 - Jan 31, 2004
    Role: Principal Investigator
    Three-Dimensional HIV RNA Genome Targeted Drug Leads
    NIH/NIAID R01AI046967Jan 1, 2000 - Aug 31, 2012
    Role: Principal Investigator
    TARGETING 4.5S RNA ANTIMICROBIAL DRUG DISCOVERY
    NIH/NIAID R41AI044515Sep 30, 1999 - Sep 29, 2000
    Role: Principal Investigator
    PURCHASE OF Q TOF MASS SPECTROMETER
    NIH/NCRR S10RR012961May 15, 1998 - May 14, 1999
    Role: Principal Investigator
    ACQUISITION OF A 500 MHZ NMR SPECTROMETER CONSOLE
    NIH/NCRR S10RR010490Jun 1, 1996 - May 31, 1997
    Role: Principal Investigator
    SLIPPED LOOP STRUCTURE--A NOVEL POLYNUCLEOTIDE FOLDING
    NIH/FIC R03TW000438Jul 1, 1994 - Jun 30, 1998
    Role: Principal Investigator
    ACQUISITION OF A 600 MHZ NMR SPECTROMETER
    NIH/NCRR S10RR007168May 19, 1992 - Sep 30, 1993
    Role: Principal Investigator
    PROTEIN STRUCTURE VIA ANALYSIS OF 2D NMR SPECTRA
    NIH/NIGMS R01GM041639Jan 1, 1991 - Dec 31, 1994
    Role: Principal Investigator
    High Performance Computing for Biomedical Research
    NIH P41RR006009Sep 1, 1990 - Jul 31, 2013
    Role: Co-Investigator
    OMEGA 500 UPGRADE WITH ARRAY PROCESSOR
    NIH/NCRR S10RR005608Mar 5, 1990 - Mar 4, 1991
    Role: Principal Investigator
    SELF-SHIELDED GRADIENT COILS FOR IN VIVO NMR INSTRUMENT
    NIH/NCRR S10RR004821Jun 14, 1989 - Jun 13, 1990
    Role: Principal Investigator
    SOLUTION STRUCTURE AND DYNAMICS OF NUCLEIC ACIDS
    NIH/NIGMS R01GM039247Feb 1, 1988 - Jun 30, 2002
    Role: Principal Investigator
    CONSOLE FOR IN VIVO MAGNETIC RESONANCE INSTRUMENT
    NIH/NCRR S10RR003841Feb 1, 1988 - Jan 31, 1989
    Role: Principal Investigator
    HIGH-FIELD 500MHZ NMR SPECTROMETER
    NIH/NCRR S10RR003479Jan 15, 1987 - Jan 14, 1988
    Role: Principal Investigator
    IN VIVO NMR SPECTROMETER/IMAGER
    NIH/NCRR S10RR002433Dec 1, 1984 - Nov 30, 1985
    Role: Principal Investigator
    NATIONAL STABLE ISOTOPE RESOURCE AT LOS ALAMOS
    NIH P41RR002231Dec 1, 1983 - Jun 30, 2005
    Role: Co-Investigator
    Pharmaceutical Sciences and Pharmacogenomics
    NIH/NIGMS T32GM007175Jul 1, 1982 - Jun 30, 2022
    Role: Co-Principal Investigator
    Theoretical Studies of Drug/Nucleic Acid Interactions
    NIH/NCI R01CA025644Jan 1, 1980 - Jul 31, 2003
    Role: Principal Investigator
    Resource for Biocomputing, Visualization, and Informatics
    NIH/NCRR P41RR001081Jun 1, 1976 - Sep 14, 2012
    Role: Co-Investigator

    Collapse ORNG Applications 
    Collapse In The News

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Chimenti MS, Bulfer SL, Neitz RJ, Renslo AR, Jacobson MP, James T, Arkin MR, Kelly MJ. A Fragment-Based Ligand Screen Against Part of a Large Protein Machine: The ND1 Domains of the AAA+ ATPase p97/VCP. J Biomol Screen. 2015 Jul; 20(6):788-800. PMID: 25690569.
      View in: PubMed
    2. Liu J, Segal MR, Kelly MJ, Pelton JG, Kim M, James T, Litt L. 13C NMR metabolomic evaluation of immediate and delayed mild hypothermia in cerebrocortical slices after oxygen-glucose deprivation. Anesthesiology. 2013 Nov; 119(5):1120-36. PMID: 23748856; PMCID: PMC3890426.
    3. Liu J, Sheldon RA, Segal MR, Kelly MJ, Pelton JG, Ferriero DM, James T, Litt L. 1H nuclear magnetic resonance brain metabolomics in neonatal mice after hypoxia-ischemia distinguished normothermic recovery from mild hypothermia recoveries. Pediatr Res. 2013 Aug; 74(2):170-9. PMID: 23708689; PMCID: PMC3734529.
    4. Saraceno M, Massarelli I, Imbriani M, James T, Bianucci AM. Optimizing QSAR models for predicting ligand binding to the drug-metabolizing cytochrome P450 isoenzyme CYP2D6. Chem Biol Drug Des. 2011 Aug; 78(2):236-51. PMID: 21575140.
      View in: PubMed
    5. Liu J, Litt L, Segal MR, Kelly MJ, Yoshihara HA, James T. Outcome-related metabolomic patterns from 1H/31P NMR after mild hypothermia treatments of oxygen-glucose deprivation in a neonatal brain slice model of asphyxia. J Cereb Blood Flow Metab. 2011 Feb; 31(2):547-59. PMID: 20717124; PMCID: PMC3010526.
    6. Chung J, Ulyanov NB, Guilbert C, Mujeeb A, James T. Binding characteristics of small molecules that mimic nucleocapsid protein-induced maturation of stem-loop 1 of HIV-1 RNA. Biochemistry. 2010 Aug 03; 49(30):6341-51. PMID: 20565056; PMCID: PMC2921804.
    7. Ulyanov NB, James T. RNA structural motifs that entail hydrogen bonds involving sugar-phosphate backbone atoms of RNA. New J Chem. 2010 May 01; 34(5):910-917. PMID: 20689681.
      View in: PubMed
    8. Lang PT, Brozell SR, Mukherjee S, Pettersen EF, Meng EC, Thomas V, Rizzo RC, Case DA, James T, Kuntz ID. DOCK 6: combining techniques to model RNA-small molecule complexes. RNA. 2009 Jun; 15(6):1219-30. PMID: 19369428; PMCID: PMC2685511.
    9. Pinto IG, Guilbert C, Ulyanov NB, Stearns J, James T. Discovery of ligands for a novel target, the human telomerase RNA, based on flexible-target virtual screening and NMR. J Med Chem. 2008 Nov 27; 51(22):7205-15. PMID: 18950148; PMCID: PMC2651004.
    10. Pellecchia M, Bertini I, Cowburn D, Dalvit C, Giralt E, Jahnke W, James T, Homans SW, Kessler H, Luchinat C, Meyer B, Oschkinat H, Peng J, Schwalbe H, Siegal G. Perspectives on NMR in drug discovery: a technique comes of age. Nat Rev Drug Discov. 2008 Sep; 7(9):738-45. PMID: 19172689; PMCID: PMC2891904.
    11. Du Z, Fenn S, Tjhen R, James T. Structure of a construct of a human poly(C)-binding protein containing the first and second KH domains reveals insights into its regulatory mechanisms. J Biol Chem. 2008 Oct 17; 283(42):28757-66. PMID: 18701464; PMCID: PMC2568903.
    12. Chung J, Mujeeb A, Jiang Y, Guilbert C, Pendke M, Wu Y, James T. A small molecule, Lys-Ala-7-amido-4-methylcoumarin, facilitates RNA dimer maturation of a stem-loop 1 transcript in vitro: structure-activity relationship of the activator. Biochemistry. 2008 Aug 05; 47(31):8148-56. PMID: 18616287.
      View in: PubMed
    13. Guilbert C, James T. Docking to RNA via root-mean-square-deviation-driven energy minimization with flexible ligands and flexible targets. J Chem Inf Model. 2008 Jun; 48(6):1257-68. PMID: 18510306; PMCID: PMC2910576.
    14. Du Z, Lee JK, Tjhen R, Stroud RM, James T. Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage. Proc Natl Acad Sci U S A. 2008 Feb 19; 105(7):2391-6. PMID: 18268334; PMCID: PMC2268147.
    15. Zeng J, Liu J, Yang GY, Kelly MJ, James T, Litt L. Exogenous ethyl pyruvate versus pyruvate during metabolic recovery after oxidative stress in neonatal rat cerebrocortical slices. Anesthesiology. 2007 Oct; 107(4):630-40. PMID: 17893460.
      View in: PubMed
    16. Ulyanov NB, Shefer K, James T, Tzfati Y. Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates. Nucleic Acids Res. 2007; 35(18):6150-60. PMID: 17827211; PMCID: PMC2094054.
    17. Du Z, Lee JK, Fenn S, Tjhen R, Stroud RM, James T. X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2. RNA. 2007 Jul; 13(7):1043-51. PMID: 17526645; PMCID: PMC1894928.
    18. Du Z, Fenn S, James T. Resonance assignment of the first and second KH (hnRNP-K homology) domains of human poly(C)-binding protein-2 (PCBP2). J Biomol NMR. 2007 Jun; 38(2):197. PMID: 17479348.
      View in: PubMed
    19. Fenn S, Du Z, Lee JK, Tjhen R, Stroud RM, James T. Crystal structure of the third KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.6 A resolution. Nucleic Acids Res. 2007; 35(8):2651-60. PMID: 17426136; PMCID: PMC1885661.
    20. Mujeeb A, Ulyanov NB, Georgantis S, Smirnov I, Chung J, Parslow TG, James T. Nucleocapsid protein-mediated maturation of dimer initiation complex of full-length SL1 stemloop of HIV-1: sequence effects and mechanism of RNA refolding. Nucleic Acids Res. 2007; 35(6):2026-34. PMID: 17341460; PMCID: PMC1874624.
    21. Mayer M, Lang PT, Gerber S, Madrid PB, Pinto IG, Guy RK, James T. Synthesis and testing of a focused phenothiazine library for binding to HIV-1 TAR RNA. Chem Biol. 2006 Sep; 13(9):993-1000. PMID: 16984889.
      View in: PubMed
    22. Zeng J, Yang GY, Ying W, Kelly M, Hirai K, James T, Swanson RA, Litt L. Pyruvate improves recovery after PARP-1-associated energy failure induced by oxidative stress in neonatal rat cerebrocortical slices. J Cereb Blood Flow Metab. 2007 Feb; 27(2):304-15. PMID: 16736046.
      View in: PubMed
    23. Ulyanov NB, Mujeeb A, Du Z, Tonelli M, Parslow TG, James T. NMR structure of the full-length linear dimer of stem-loop-1 RNA in the HIV-1 dimer initiation site. J Biol Chem. 2006 Jun 09; 281(23):16168-77. PMID: 16603544.
      View in: PubMed
    24. Ulyanov NB, Du Z, James T. Refinement of Nucleic Acid Structures with Residual Dipolar Coupling Restraints in Cartesian Coordinate Space. Modern Magnetic Resonance, Edited by G.A. Webb. Dordrecht: Springer. 2006; 661-666.
    25. Du Z, Lee JK, Tjhen R, Li S, Pan H, Stroud RM, James T. Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.7 A. J Biol Chem. 2005 Nov 18; 280(46):38823-30. PMID: 16186123.
      View in: PubMed
    26. Mayer M, James T. Discovery of ligands by a combination of computational and NMR-based screening: RNA as an example target. Methods Enzymol. 2005; 394:571-87. PMID: 15808238.
      View in: PubMed
    27. James T. Methods in Enzymology, Nuclear Magnetic Resonance of Biological Macromolecules, Vol. 394, 631 pages. New York: Elsevier. 2005.
    28. Lapidot A, Vijayabaskar V, Litovchick A, Yu J, James T. Structure-activity relationships of aminoglycoside-arginine conjugates that bind HIV-1 RNAs as determined by fluorescence and NMR spectroscopy. FEBS Lett. 2004 Nov 19; 577(3):415-21. PMID: 15556620.
      View in: PubMed
    29. Du Z, Yu J, Ulyanov NB, Andino R, James T. Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses. Biochemistry. 2004 Sep 28; 43(38):11959-72. PMID: 15379536.
      View in: PubMed
    30. Du Z, Yu J, Chen Y, Andino R, James T. Specific recognition of the C-rich strand of human telomeric DNA and the RNA template of human telomerase by the first KH domain of human poly(C)-binding protein-2. J Biol Chem. 2004 Nov 12; 279(46):48126-34. PMID: 15331611.
      View in: PubMed
    31. Zeng J, Hirai K, Yang GY, Ying W, Swanson RA, Kelly M, Mayer M, James T, Litt L. Using 31P NMR spectroscopy at 14.1 Tesla to investigate PARP-1 associated energy failure and metabolic rescue in cerebrocortical slices. J Bioenerg Biomembr. 2004 Aug; 36(4):415-9. PMID: 15377881.
      View in: PubMed
    32. Du Z, Ulyanov NB, Yu J, Andino R, James T. NMR structures of loop B RNAs from the stem-loop IV domain of the enterovirus internal ribosome entry site: a single C to U substitution drastically changes the shape and flexibility of RNA. Biochemistry. 2004 May 18; 43(19):5757-71. PMID: 15134450.
      View in: PubMed
    33. Hirai K, Hayashi T, Chan PH, Zeng J, Yang GY, Basus VJ, James T, Litt L. PI3K inhibition in neonatal rat brain slices during and after hypoxia reduces phospho-Akt and increases cytosolic cytochrome c and apoptosis. Brain Res Mol Brain Res. 2004 Apr 29; 124(1):51-61. PMID: 15093685.
      View in: PubMed
    34. Kuwata K, Kamatari YO, Akasaka K, James T. Slow conformational dynamics in the hamster prion protein. Biochemistry. 2004 Apr 20; 43(15):4439-46. PMID: 15078089.
      View in: PubMed
    35. Mayer M, James T. NMR-based characterization of phenothiazines as a RNA binding scaffold. J Am Chem Soc. 2004 Apr 07; 126(13):4453-60. PMID: 15053636.
      View in: PubMed
    36. Kuwata K, Matumoto T, Cheng H, Nagayama K, James T, Roder H. NMR-detected hydrogen exchange and molecular dynamics simulations provide structural insight into fibril formation of prion protein fragment 106-126. Proc Natl Acad Sci U S A. 2003 Dec 09; 100(25):14790-5. PMID: 14657385; PMCID: PMC299804.
    37. Tonelli M, Ulyanov NB, Billeci TM, Karwowski B, Guga P, Stec WJ, James T. Dynamic NMR structures of [Rp]- and [Sp]-phosphorothioated DNA-RNA hybrids: is flexibility required for RNase H recognition? Biophys J. 2003 Oct; 85(4):2525-38. PMID: 14507715; PMCID: PMC1303476.
    38. Du Z, Yu J, Andino R, James T. Extending the family of UNCG-like tetraloop motifs: NMR structure of a CACG tetraloop from coxsackievirus B3. Biochemistry. 2003 Apr 22; 42(15):4373-83. PMID: 12693932.
      View in: PubMed
    39. Litt L, Hirai K, Basus VJ, James T. Temperature control of respiring rat brain slices during high field NMR spectroscopy. Brain Res Brain Res Protoc. 2003 Feb; 10(3):191-8. PMID: 12565690.
      View in: PubMed
    40. Comolli LR, Smirnov I, Xu L, Blackburn EH, James T. A molecular switch underlies a human telomerase disease. Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26):16998-7003. PMID: 12482936; PMCID: PMC139258.
    41. Mayer M, James T. Detecting ligand binding to a small RNA target via saturation transfer difference NMR experiments in D(2)O and H(2)O. J Am Chem Soc. 2002 Nov 13; 124(45):13376-7. PMID: 12418877.
      View in: PubMed
    42. Kuwata K, Li H, Yamada H, Legname G, Prusiner SB, Akasaka K, James T. Locally disordered conformer of the hamster prion protein: a crucial intermediate to PrPSc? Biochemistry. 2002 Oct 15; 41(41):12277-83. PMID: 12369815.
      View in: PubMed
    43. Comolli LR, Ulyanov NB, Soto AM, Marky LA, James T, Gmeiner WH. NMR structure of the 3' stem-loop from human U4 snRNA. Nucleic Acids Res. 2002 Oct 15; 30(20):4371-9. PMID: 12384583; PMCID: PMC137124.
    44. Hirai K, Sugawara T, Chan PH, Basus VJ, James T, Litt L. Cytochrome c associated apoptosis during ATP recovery after hypoxia in neonatal rat cerebrocortical slices. J Neurochem. 2002 Oct; 83(2):309-19. PMID: 12423241.
      View in: PubMed
    45. Macdonald JM, Schmidlin O, James T. In vivo monitoring of hepatic glutathione in anesthetized rats by 13C NMR. Magn Reson Med. 2002 Sep; 48(3):430-9. PMID: 12210907.
      View in: PubMed
    46. Du Z, Lind KE, James T. Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening. Chem Biol. 2002 Jun; 9(6):707-12. PMID: 12079782.
      View in: PubMed
    47. Ulyanov NB, Bauer WR, James T. High-resolution NMR structure of an AT-rich DNA sequence. J Biomol NMR. 2002 Mar; 22(3):265-80. PMID: 11991355.
      View in: PubMed
    48. Lind KE, Du Z, Fujinaga K, Peterlin BM, James T. Structure-based computational database screening, in vitro assay, and NMR assessment of compounds that target TAR RNA. Chem Biol. 2002 Feb; 9(2):185-93. PMID: 11880033.
      View in: PubMed
    49. Konerding D, James T, Trump E, Soto AM, Marky LA, Gmeiner WH. NMR structure of a gemcitabine-substituted model Okazaki fragment. Biochemistry. 2002 Jan 22; 41(3):839-46. PMID: 11790105.
      View in: PubMed
    50. James T. The Encyclopedia of Molecular Medicine. Edited by T.E. Creighton. New York: John Wiley & Sons. 2002; 3100-3102.
    51. James T, Dötsch V, Schmitz U (Editors).Methods in Enzymology, Nuclear Magnetic Resonance of Biological Macromolecules, Part A, Vol. 338, 480 pages . New York: Academic Press. 2001.
    52. James T, Dötsch V, Schmitz U (Editors).Methods in Enzymology, Nuclear Magnetic Resonance of Biological Macromolecules, Part B, Vol. 339, 454 pages. New York: Academic Press. 2001.
    53. James T. Current Protocols in Nucleic Acid Chemistry. Edited by S.L. Beaucage, D.E. Bergstrom, G.D. Glick, and R.A. Jones. New York: John Wiley & Sons, Inc., 7.2. 2000; 1-15.
    54. James T, Lind KE, Filikov, AV, Mujeeb A. Three-Dimensional RNA Structure-Based Drug Discovery.Structure, Motion, Interaction and Expression of Biological Macromolecules. Proc. Eleventh Conversation in Biomolecular Structure & Dynamics. Edited by RH Sarma and MH Sarma. New York: Adenine Press, 11. 2000; 201-205.
    55. Bell TW, Khasanov AB, Drew MG, Filikov A, James T. A Small-Molecule Guanidinium Receptor: The Arginine Cork. Angew Chem Int Ed Engl. 1999 Sep; 38(17):2543-2547. PMID: 10508332.
      View in: PubMed
    56. Mujeeb A, Ulyanov NB, Billeci, TM, Farr-Jones S, James T. Structure Computation and Dynamics in Protein NMR, Biological Magnetic Resonance, Edited by LJ Berliner and N Rama Krishna. Vol. 17, New York: Plenum Publ Corp. 1999; 201-222.
    57. Ulyanov NB, Ivanov VI,Minyat EE, Khomyakova EB, Petrova MV, Lesiak K, James T. Structure, Motion, Interaction and Expression of Biological Macromolecules. Proc. Tenth Conversation in Biomolecular Structure & Dynamics. Edited by RH Sarma and MH Sarma. New York: Adenine Press, 75-88. 1998.
    58. Ulyanov NB, Mujeeb A, Donati A, Furrer P, Liu H, Farr-Jones S, Konerding DE, Schmitz U, T.L. James TL. Determination of Structural Ensembles from NMR Data: Conformational Sampling and Probability Assessment.Molecular Modeling and Structure Determination of Nucleic Acids, Symposium Series, Number XX. Edited by NB Leontis and J Santa Lucia. American Chemical Society, Washington, DC. 1998; 181-194.
    59. James T. Nuclear Magnetic Resonance. Bethesda: Biophysical Society. Ch 1. 1998; 1-31.
    60. Schmitz U, Blocker FJH, James T. Oxford Handbook of Nucleic Acid Structure, Edited by S. Neidle. Oxford: Oxford University Press. 1998; 253-294.
    61. Baldwin MA, James T, Cohen FE, Prusiner SB. The Three-Dimensional Structure of PrP: Implications for Prion Disease.Biochemical Soc. Trans. 26. 1998; 481-486.
    62. A. Donati, C. Rossi, S. Martini, N.B. Ulyanov, and T.L. James.NOE Intensities from Multiple Conformations in Solution Analyzed by the Complete Relaxation Matrix Approach. Appl. Magn. Reson. 1998; 15:401-406.
    63. Lukavsky P, Billeci TM, James T, Schmitz U. NMR Structure Determination of a 28-Nucleotide RNA from the Mammalian Signal Recognition Particle.Molecular Modeling and Structure Determination of Nucleic Acids, ACS Symposium Series, Edited by N.B. Leontis and J. Santa Lucia. American Chemical Society, 122-149. 1998.
    64. Litt L, Espanol MT, Xu Y, Cohen Y, Chang L-H, P.R. Weinstein PR, Chan PH, James T, Respiring Rat Brain Slices: Model Studies of Hypoxia, Ischemia, and Excitotoxicity. .NMR Spectroscopy of Biomolecules, Edited by J.L. Markley and S.J. Opella. New York: Oxford University Press, 340-357. 1997.
    65. Schmitz U, Gonzales C, Ulyanov NB, Blocker, FH, Liu H, James T. Biological Structure and Dynamics, Proceedings of the Ninth Conversation in Biomolecular Structure and Dynamics. Edited by R.H. Sarma and M.H. Sarma. New York: Adenine Press, Vol. 2, 165-187. 1996.
    66. Baldwin MA, Zhang H, Bekker T, Zhou S, Nguyen JT, Kolbert AC, Heller J, James T, Wemmer DE, Pines A, Cohen FE, Prusiner SB. Synthetic Peptides Model a-helix-b-sheet Conformational Changes in the Prion Protein.Peptides: Chemistry, Structure and Biology, Edited by P.T.P. Kaumaya and R.S. Hodges. Leiden: ESCOM Science Publishers B.V., 468-470. 1996.
    67. T.L. James TL, Gonzalez C, Liu, H, Schmitz U, Ulyanov NB. Dynamic Structure of Nucleic Acid Duplexes.NMR as a Structural Tool for Macromolecules: Current Status and Future Directions, Edited by B.D. Nageswara Rao and M.D. Kemple. New York: Plenum Publishing Corp., 191-206. 1996.
    68. James T. Methods in Enzymology, Nuclear Magnetic Resonance and Nucleic Acids, Vol. 261, 644 pages. New York: Academic Press. 1995.
    69. James T. Encyclopedia of Nuclear Magnetic Resonance. Edited by D.M. Grant and R.K. Harris. New York: John Wiley & Sons, 3320-3331. 1995.
    70. Schmitz U, James T. Methods in Enzymology, Nuclear Magnetic Resonance and Nucleic Acids, Edited by T.L. James. New York: Academic Press, Vol. 261, 3-44. 1995.
    71. James T. Encyclopedia of Nuclear Magnetic Resonance. Edited by D.M. Grant and R.K. Harris. New York: John Wiley & Sons. 1995.
    72. Ulyanov NB, James T. Methods in Enzymology, Nuclear Magnetic Resonance and Nucleic Acids. Edited by T.L. James. New York: Academic Press, Vol. 261. 1995; 90-121.
    73. James, T.L.Computational Strategies Pertinent to NMR Solution Structure Determination. Current Opinion in Structural Biology. 1994; 4:275-284.
    74. James T, 116, 9412.Book Review on "Nucleic Acid Targeted Drug Design. Edited by C.L. Propst and T.J. Perun. New York: Marcel Dekker, 1992". 1994.
    75. James T, Oppenheimer NJ (Editors).Methods in Enzymology, Nuclear Magnetic Resonance, Part C. Vol 239, 813 pages. New York: Academic Press. 1994.
    76. James T. Structural Biology: The State of the Art. Proc. Eighth Conversation in Biomolecular Structure & Dynamics. Vol. 2, pp. 251-272. Edited by R.H. Sarma and M.H. Sarma. New York: Adenine Press. 1994.
    77. James T, Bishop KD, Blocker F, Gonzalez C, Kumar A, Liu H, Mujeeb A, Schmitz U, Ulyanov NB, Yuan Y-C, Weisz K. Determination of High-Resolution, Sequence-Dependent DNA Duplex Structures in Solution.Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy. Edited by C.L. Stassinopoulou. NATO ASI Series Volume. Berlin: Springer-Verlag , Vol H87. 1994; 335-348.
    78. James T. Methods in Enzymology, Nuclear Magnetic Resonance, Part C. Edited by T.L. James and N.J. Oppenheimer. New York: Academic Press, Vol. 239. 1994; 416-439.
    79. Baldwin MA, Nguyen JT, Zhang H, Pan KM, Huang Z, Livshits TL, Kaneko K, Cohen FE, James T, Prusiner SB. Conformational Changes in the Prion Protein Can be Simulated with Synthetic Peptides. .Proceedings of the Twenty-Third European Peptide Symposium. Edited by H.L.S. Maia, Leiden: ESCOM Science Publishers B.V., 580-581. 1994.
    80. James T, Kerwood DJ, Gochin M, Mills PA, Borgias BA, Basus VJ. Refinement of Three-Dimensional Protein and DNA Structures in Solution from Two-Dimensional NMR Spectra.New Methods in Drug Research, Vol. 4. Edited by A. Makriannis. Barcelona: Prous. 1993.
    81. Liu, H., Weisz, K. and James, T.L. Tailored Excitation by Shaped RF Pulses: Optimization and Implementation of Excitation Containing a Notch.J. Magn. Reson. 1993.
    82. Liu, H., Kumar,A., Weisz,K., Schmitz, U., Bishop, K.D., and James, T.L. .Extracting Accurate Distances and Bounds from 2D NOE Exchangeable Proton Peaks. J. Am. Chem Soc. 1993; 115:1590-1591.
    83. James, TL.Refinement of Three-Dimensional Biopolymer Structures in Solution Using NMR Data. Chemical Design Automation News. 1992; 7:19-27.
    84. Liu, H., Thomas, P.D., and James, T.L.Averaging of Cross-Relaxation Rates and Distances for Methyl, Methylene and Aromatic Ring Protons Due to Motion or Overlap: Extraction of Accurate Distances Iteratively via Relaxation Matrix Analysis of 2D NOE Spectra. J. Magn. Reson. 1992; 98:163-175.
    85. Smith V, Kurhanewicz J, James T. Solvent-Suppression Pulses. III. Design Using Simulated-Annealing Optimization with in Vitro and in Vivo Testing. J Magn Reson. 1992; 96:345-362.
    86. Kumar, A., James, T.L., and Levy, G.C.Macromolecule Structure Refinement by Relaxation Matrix Analysis of 2D NOE Spectra: Effect of Differential Internal Motion on Internuclear Distance Determination in Proteins. Israel J. of Chem. 1992; 32:257-261.
    87. Chang L-H, James T. Biol Magn Reson, Edited by L.J. Berliner and J. Reuben. New York: Plenum Press. 1992; 135-158.
    88. Schmitz, U.,Kumar, A. and James, T.L.Dynamic Interpretation of NMR Data: Molecular Dynamics with Weighted Time-Averaged Restraints and Ensemble R-Factor. J. Am. Chem. Soc. 1992; 114:10654-10655.
    89. Thomas, M.A., Narayan, P., Kurhanewicz, J., Jajodia, P., James, T.L., and Weiner, M.Detection of Phosphorus Metabolites in Human Prostrates with a Transrectal Phosphorus-31 NMR Probe. J. Magn. Reson. 1992; 99:377-386.
    90. Litt L, Lockhart S, Cohen Y, Yasuda N, Kim F, Freire B, Laster M, Peterson N, Taheri S, Chang L-H, Sessler DI, Moseley M, Eger II EI, James T, Isoflurane, and Desflurane: Rapid Elimination and No Abundant Saturable Binding.Ann NY Acad Sci, 625,. 1991; 707-724.
    91. Smith V, Kurhanewicz J, James T. Solvent-Suppression Pulses. I. Design Using Optimal Control Theory. J Magn Reson. 1991; 95:41-60.
    92. Smith V, Kurhanewicz J, James T. Solvent-Suppression Pulses. II. In Vitro and In Vivo Testing of Optimal Control Theory Pulses. J Magn Reson. 1991; 95:61-70.
    93. James T, Gochin M, Kerwood DJ, Pearlman DA, Schmitz U, Thomas PD. Refinement of Three-Dimensional Protein and DNA Structures in Solution from NMR Data.Computational Aspects of the Study of Biological Macromolecules by NMR. Edited by J.C. Hoch, F.M. Poulsen, and D. Redfield. NATO ASI Series, Vol. 225. New York: Plenum Press. 1991; 331-347.
    94. Naderi HM, Thomason JF, Borgias BA, Anderson S, James T, I.D. Kuntz ID. 1H NMR Assignments and Three-Dimensional Structure of Ala14/Ala38 Bovine Pancreatic Trypsin Inhibitor Based on Two-Dimensional NMR and Distance Geometry.Conformations and Forces in Protein Folding, Edited by B.T. Nall and K.A. Dill. Washington: Amer Soc Adv Sci. 1991; 86-114.
    95. James T, Basus VJ. Generation of High-Resolution Protein Structures in Solution from Multidimensional NMR.Ann. Rev. Phys. Chem. 42, 501-542. 1991.
    96. James T, Borgias B, Bianucci AM, Zhou N. Solution Structure Refinement Using Complete Relaxation Matrix Analysis of 2D NOE Experiments: DNA Fragments.NMR and Biomolecular Structure, Edited by I. Bertini, H. Molinari, and N. Niccolai. Weinheim: VCH Verlagsgesellschaft. 1991; 87-111.
    97. James T. Relaxation Matrix Analysis of Two-Dimensional Nuclear Overhauser Effect Spectra to Obtain Accurate Biomolecular Structural Constraints and to Assess Structural Quality. Current Opinion in Structural Biology. 1991; 1:1042-1053.
    98. Lockhart SH, Cohen Y, Yasuda N, Kim F, Litt L, Eger EI, Chang LH, James T. Absence of abundant binding sites for anesthetics in rabbit brain: an in vivo NMR study. Anesthesiology. 1990 Sep; 73(3):455-60. PMID: 2393130.
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    99. Borgias BA, James T. MARDIGRAS –– A Procedure for Matrix Analysis of Relaxation for Discerning Geometry of an Aqueous Structure. J Magn Reson. 1990; 87:475-487.
    100. Borgias BA, Gochin M, Kerkwood DJ, James T. Progress in Nuclear Magnetic Resonance Spectroscopy, Edited by J.W. Emsley, J. Feeney, and L.H. Sutcliffe. Oxford: Pergamon Press. 1990; 83-100.
    101. James T. Frontiers of NMR in Molecular Biology, UCLA Symposium on Molecular and Cellular Biology, Vol. 109, Edited by D. Live, I. Armitage, and D. Patel. New York: Alan R. Liss, Inc. 1990; 271-274.
    102. James T, Borgias BA, Bianucci AM, Zhou N. Determination of DNA and Protein Structure in Solution via Complete Relaxation Matrix Analysis of 2D NOE Spectra.NMR Applications in Biopolymers, Edited by J.W. Finley, S.J. Schmidt, and J.S. Serianni. New York: Plenum Press. 1990; 135-154.
    103. Borgias BA, James T. Biol Magn Reson. 1990; 119-155.
    104. James T, Borgias BA. Determination of DNA and Protein Structures via Complete Relaxation Matrix Analysis of 2D NOE Spectra. .Frontiers of NMR in Molecular Biology, UCLA Symposium on Molecular and Cellular Biology, Vol. 109, Edited by D. Live, I. Armitage, and D. Patel. New York: Alan R. Liss, Inc. 1990; 177-187.
    105. Cohen Y, Chang L-H, Litt L, James T. Neurotransmission and Cerebrovascular Function, Vol. I, Edited by J Seylaz & T MacKenzie. Amsterdam: Elsevier. 1989; 423-427.
    106. Borgias BA, James T. Methods in Enzymology, NMR Techniques, Part A: Spectral Techniques and Dynamics,Vol 176, Edited by NJ Oppenheimer and TL James. New York: Academic Press. 1989; 169-183.
    107. Oppenheimer NJ, James T. Methods in Enzymology, Nuclear Magnetic Resonance, Part B: Structure and Mechanism, Vol. 177, 507 pages. New York: Academic Press. 1989.
    108. Oppenheimer NJ, James T. Methods in Enzymology, Nuclear Magnetic Resonance, Part A: Spectral Techniques and Dynamics. Vol 176, 530 pages. New York: Academic Press. 1989.
    109. Cohen Y, Chang L-H, Litt L, James T. Spatially Localized COSY Spectra from a Surface Coil Using Phase-Encoding Magnetic Field Gradients. J Magn Reson. 1989; 85:203-208.
    110. James T, Borgias BM, Bianucci AM, Jamin N, Pattabiraman N, Suzuki E-I, Zhou N, Zon G. Molecular Structure Determination via Complete Relaxation Matrix Analysis of 2D NOE Spectra and Molecular Mechanics: Application to DNA Fragments.NMR Spectroscopy and Drug Development. 1988; 358-379.
    111. Shirane R, Chang L-H, Weinstein PR, James T. In Advances in Surgery for Cerebral Stroke. Edited by J. Suzuki. Tokyo: Springer-Verlag. 1988; 633-637.
    112. Gonzalez-Mendez R, Engeseth H, Gibson AAB, de Olivares J, Litt L, James T. The Modulation Theorem in Tailored Radiofrequency Excitation: Application to a Notch Filter. J Magn Reson. 1988; 78:308-313.
    113. Pogliani L, T.L. James TL, Laschi LH, N. Ishige N, Pitts LH.31P NMR of "In Vivo" Insulted Rat Brain. Physica Medica. 1988; 1:13-21.
    114. Borgias BA, James T. COMATOSE: A Method for Constrained Refinement of Macromolecular Structure Based on Two-Dimensional Nuclear Overhauser Effect Spectra. J Magn Reson. 1988; 79:493-512.
    115. Wu S, White R, Wikman-Coffelt J, Sievers R, Wendland M, Garrett J, Higgins CB, James T, Parmley WW. The preventive effect of verapamil on ethanol-induced cardiac depression: phosphorus-31 nuclear magnetic resonance and high-pressure liquid chromatographic studies of hamsters. Circulation. 1987 May; 75(5):1058-64. PMID: 3568306.
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    116. James T, Chang L-H, W. Chew W, Gonzalez-Mendez R, Litt L, Mills P, Moseley M, Pereira B, Sessler DI, Weinstein PR. In Situ Brain Metabolism. In Physiological NMR Spectroscopy: From Isolated Cells to Man, Edited by S.M. Cohen. Ann. N.Y. Acad. Sci., Vol 508.1987; 64-80.
    117. Chew WM, Chang L-H, Flamig DP, James T. The Swift Method for In Vivo Localized Excitation (SMILE). J Magn Reson. 1987; 75:523-528.
    118. James T, Chang L-H, Chew W, Gonzalez-Mendez R, Litt L, Mills P, Moseley M, Pereira B, Sessler DI, Weinstein PR.In Situ Brain Metabolism. Ann NY Acad Sci. 1987; 508:64-80.
    119. Chang L-H, Chew WM, Weinstein PR, James T. A Balance-Matched Double-Tuned Probe for In Vivo 1H and 31P NMR. J Magn Reson. 1987; 72:168-172.
    120. James T, Chew WM, Giannini DD, Gonzalez-Mendez R, Moseley ME, Pogliani L, Vigneron D .Principles of Magnetic Resonance Spectroscopy. Appl Radiol. 1987; 16:40-52.
    121. Moseley ME, Chew WM, Brant-Zawadzki M, James T. 1987; 107-113.
    122. James T, Suzuki E-I, N. Pattabiraman N, Zon G. Detailed Structure Determination of DNA Fragments Using Complete Relaxation Matrix Analysis of Two-Dimensional NMR Spectra, Molecular Mechanics Calculations and Computer Graphics. In Biophosphates and Their Analogues. Synthesis, Metabolism, and Activity. Edited by K.S. Bruzik and W.J. Stec. Amsterdam: Elsevier Science, .1987; 503-514.
    123. Murphy-Boesch J, So G, James T. Precision Mapping of the B1 Field Using the Rotating Frame Experiment. J Magn Reson. 1987; 73:293-299.
    124. Markiewicz W, Wu SS, Parmley WW, Higgins CB, Sievers R, James T, Wikman-Coffelt J, Jasmin G.Evaluation of the Hereditary Syrian Hamster Cardiomyopathy by 31P Nuclear Magnetic Resonance Spectroscopy: Improvement After Acute Verapamil Therapy. Circulation Research. 1987; 59:597-604.
    125. Pogliani L, Valensin G, Pitts LH, Ishige N, James T. 31P NMR Results of In Vivo Insulted Rat Brain. A Qualitative Interpretation of the Metabolic Changes. Physica Medica. 1987; 1:35-41.
    126. Margulis AR, James T. Localized tissue MR spectroscopy. AJR Am J Roentgenol. 1986 Dec; 147(6):1327-8. PMID: 3490773.
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    127. James T, Suzuki E-I, Pattabiraman N, Zon G.2D NOE Full Relaxation Matrix Analysis and Molecular Mechanics Calculations for Structure Determination in Solution: DNA Fragments. Bull Magn Reson. 1986; 8:152-156.
    128. James T, Broido MS, Jamin N, Young GB, Zon G. Structure and Dynamics via Two-dimensional NMR. Illustrations with DNA Fragments. In Advanced Magnetic Resonance Techniques in Systems of High Molecular Complexity. Edited by N. Nicolai and G. Valensin. Boston: Birkhauser.1986; 81-108.
    129. James T, Chew WM, Giannini DD, Gonzalez-Mendez R, Moseley ME, Pogliani L, Vigneron D .Magnetic Resonance Spectroscopy: Principles and Potential Application. Applied Radiol. 1986; 16:40-52.
    130. Margulis AR, James T. Localized Tissue MR Spectroscopy. Am J Roentgenol. 1986; 147:1327-1328.
    131. James T. Technical Obstacles Hinder Spread of MR Spectroscopy. Diagnostic Imaging. 1986; 8:218-221.
    132. Brody AS, Sorette MP, Gooding CA, Listerud J, Clark MR, Mentzer WC, Brasch RC, James T. AUR memorial Award. Induced alignment of flowing sickle erythrocytes in a magnetic field. A preliminary report. Invest Radiol. 1985 Sep; 20(6):560-6. PMID: 2933361.
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    133. Gonzalez-Mendez R, Moseley ME, Murphy-Boesch J, Chew WM, Litt L, James T. Selective Inversion with Surface Coils: Use of Depth Pulses for the Inversion Transfer Experiment In Vivo. J Magn Reson. 1985; 65:516-521.
    134. James T, Young GB, Broido MS, Keepers JW, Jamin N, Zon G. Quantitative Internuclear Distances via 2D NMR Spectra: A Test Case and DNA Octamer Duplex. In Proceedings of the International Symposium on Biomolecular Structure and Interactions. Edited by V. Sasisekharan and K.R.K. Easwaran.1985; 553-562.
    135. James T, In Vivo Nuclear Magnetic Resonance Spectroscopy. Article in Workshop on Advances in NASA-Relevant, Minimally Invasive Instrumentation, April 25-27, 1984, Asilomar, California. Pasadena: NASA Jet Propulsion Laboratory.1985; 33-52.
    136. James T, Gonzalez-Mendez R, Litt L. Magnetic Resonance Spectroscopy: Principles and Potential Application in Medicine. Chapter in Contemporary Imaging. Edited by H.I. Goldberg, C.B. Higgins, and E.J. Ring. San Francisco: Radiology Research and Education Foundation.1985; 141-148.
    137. James T, Phosphorus-31 NMR as a Probe for Phosphoproteins. In CRC Critical Reviews in Biochemistry, Vol. 18, Edited by G.D. Fasman. Boca Raton: CRC Press.1985; 1-30.
    138. James T, In Vivo Nuclear Magnetic Resonance Spectroscopy. Chapter in NMR, CT, and Interventional Radiology. Edited by A.A. Moss, E.J. Ring, and C.B. Higgins. San Francisco: Radiology Education and Research Foundation.1984; 235-244.
    139. James T, Basic Nuclear Magnetic Resonance Principles. Chapter 2 in Biomedical Magnetic Resonance. Edited by T.L. James and A.R. Margulis. San Francisco: Radiology Research and Education Foundation.1984; 7-22.
    140. James T, Edited by D. Gorenstein. New York: Academic Press.1984; 349-400.
    141. Moseley ME, Chew WM, James T. 1984; 267-271.
    142. Gonzales-Mendez R, Litt L, Koretsky AP, von Colditz J, Weiner MW, James T. Comparison of 31P NMR Spectra of In Vivo Rat Brain Using Convolution Difference and Saturation with a Surface Coil. Source of the Broad Component in the Brain Spectrum. J Magn Reson. 1984; 57:526-533.
    143. Keepers JW, James T. A Theoretical Study of Distance Determinations from NMR. Two-Dimensional Nuclear Overhauser Effect Spectra. J Magn Reson. 1984; 57:404-426.
    144. James T, Margulis AR (Editors).Biomedical Magnetic Resonance, San Francisco: Radiology Research and Education Foundation. 1984; 1-462.
    145. James T, Margulis AR. Historical Development of Biomedical Magnetic Resonance. Chapter 1 in Biomedical Magnetic Resonance, Edited by T.L. James and A.R. Margulis. San Francisco: Radiology Research and Education Foundation.1984; 1-6.
    146. Young GB, James T. Determination of Molecular Structure in Solution via Two-Dimensional Nuclear Overhauser Effect Experiments: Proflavine as a Rigid Molecule Test Case. J Amer Chem Soc. 1984; 106:7986-7988.
    147. Moseley ME, Nishimura MC, Pitts LH, Bartkowski HM, James T. Proton Nuclear Magnetic Resonance Spectroscopy of Normal and Edematous Brain Tissue In Vitro: Changes in Relaxation during Tissue Storage. Magn Reson Imaging. 1984; 2:205-209.
    148. Sievers R, Parmley WW, James T, Wikman-Coffelt J. Energy levels at systole vs. diastole in normal hamster hearts vs. myopathic hamster hearts. Circ Res. 1983 Dec; 53(6):759-66. PMID: 6640862.
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    149. Düzgünes N, Wilschut J, Hong K, Fraley R, Perry C, Friend DS, James T, Papahadjopoulos D. Physicochemical characterization of large unilamellar phospholipid vesicles prepared by reverse-phase evaporation. Biochim Biophys Acta. 1983 Jul 13; 732(1):289-99. PMID: 6688185.
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    150. Berman E, James T. 13C-n.m.r.-spectral study of galactosyltransferase specificity with regard to the carbohydrate side-chain of native ovalbumin. Carbohydr Res. 1983 Feb 16; 113(1):141-50. PMID: 6404553.
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    151. Koretsky A, Straus W, Basus V, Murphy J, Bendel P, James T, Weiner M. Feasibility of 31P NMR to Study Metabolic Effects of Renal Ischemia In Vivo. Proceedings of the Eighth International Congress on Nephrology, Satellite Symposium on Acute Renal Failure, Edited by H.E. Eliahu. New York: Saunders.1983; 42-48.
    152. James T, Bendel P, Keepers JW, Taylor JE .The Dynamic Structure of Nucleic Acids. Bull Magn Reson. 1983; 5:165-167.
    153. James T, Bendel P, James JL, Keepers JW, Kollman PA, Lapidot A, Murphy-Boesch J, Taylor JE. Conformational Flexibility of Nucleic Acids. Chapter in Nucleic Acids: The Vectors of Life,. Edited by B. Pullman and J. Jortner. D. Reidel.1983; 155-167.
    154. James T. Conformational Flexibility in Nucleic Acids Investigated by NMR Relaxation. Bull Magn Reson. 1983; 4:119-159.
    155. James T, Schmidt PG.NMR of Nucleic Acids. Magn Reson Rev. 1983; 8:139-163.
    156. Koretsky AP, Wang S, Murphy-Boesch J, Klein MP, James T, Weiner MW.13P NMR Spectroscopy of Rat Organs, In Situ, Using Chronically Implanted Radiofrequency Coils. Proc Nat Acad Sci. 1983; 80:7491-7495.
    157. James T, C.B. Higgins, L. Kaufman, and L.E. Crooks. San Francisco: Radiology Research and Education Foundation.1983; 41-51.
    158. Goux WJ, Perry C, James T. An NMR study of 13C-enriched galactose attached to the single carbohydrate chain of hen ovalbumin. Motions of the carbohydrates of glycoproteins. J Biol Chem. 1982 Feb 25; 257(4):1829-35. PMID: 7056747.
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    159. Bendel P, James T. Transverse Relaxation of 31P in 5'-AMP. J Magn Reson. 1982; 48:76-85.
    160. Keepers JW, James T. Models for DNA Backbone Motions: An Interpretation of NMR Relaxation Experiments. J Amer Chem Soc. 1982; 104:929-939.
    161. Bendel P, Laub O, James T. Molecular Motions of Supercoiled and Circular-DNA. A Phosphorus-31 Nuclear Magnetic Resonance Study. J Am Chem Soc. 1982; 104:6748-6753.
    162. Edmondson DE, James T, Edited by V. Massey and C.H. Williams. Amsterdam: Elsevier North Holland, Inc. .1982; 111-118.
    163. James T. Internal Motions in Proteins Examined by 13C NMR Rotating Frame Spin-Lattice Relaxation: Chymotrypsinogen. J Magn Reson. 1980; 39:141-153.
    164. Bolton PH, James T. Fast and Slow Conformational Fluctuations of RNA and DNA. Subnanosecond Internal Motion Correlation Times Determined by 31P NMR. J Am Chem Soc. 1980; 102(1):25-31.
    165. Harkey MR, Settle WL, James T, Trevor AJ. Spectral studies on the interaction of dichloromethane with hemoglobin. Mol Pharmacol. 1979 Nov; 16(3):1065-74. PMID: 530249.
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    166. James T, Sawan SP.Unfolding of Ribonuclease A by Guanidinium Chloride. Protein Internal Motions Studied by Nuclear Magnetic Resonance Spin-Lattice Relaxation in an Off-Resonance Rotating Frame. J Am Chem Soc. 1979; 101(23):7050-7055.
    167. James T, Matson GB.Rotating Frame Spin-Lattice Relaxation in the Presence of an Off-Resonance Radiofrequency Field. Scalar Relaxation of 31P in PBr3. J Magn Reson. 1979; 33:345-353.
    168. Sawan SP, James T, Gruenke LD, Craig JC.Proton NMR Assignments for Cholesterol. Use of Deuterium NMR as an Assignment Aid. J Magn Reson. 1979; 35:409-414.
    169. Bolton PH, James T. Line Narrowing Induced by Selective Population Transfer. J Magn Reson. 1979; 36:443-446.
    170. Bolton PH, James T. Molecular Motions in RNA and DNA Investigated by Phosphorus-31 and Carbon-13 NMR Relaxation. J Phys Chem. 1979; 83(26):3359-3366.
    171. James T. Chapter 14 in NMR and Biochemistry. A Symposium Honoring Mildred Cohn. Edited by SJ Opella and P Lu. 1979; 211-223.
    172. Sawan SP, James T. Use of a Plastic Tube Insert for NMR Experiments Entailing Hazardous Samples. J Magn Reson. 1978; 32:173-174.
    173. James T, Matson GB, Kuntz ID.Protein Rotational Correlation Times Determined in Aqueous Solution by Carbon-13 Rotating Frame Spin-Lattice Relaxation in the Presence of an Off-Resonance Radiofrequency Field. J Am Chem Soc. 1978; 11(100): 3590-3594.
    174. James T, Matson GB, Kuntz ID, Fisher RW, Buttlaire DH .Rotating Frame Spin-Lattice Relaxation in the Presence of an Off-Resonance Radiofrequency Field. Investigation of Intermediate Molecular Motion. J Magn Reson. 1977; 28:417-426.
    175. Santi DV, Pogolotti AL, James T, Wataya Y, Ivanetich KM, Lam SSM. Thymidylate Synthetase: Interaction with 5-Fluoro and 5-Trifluoromethyl-2'-Deoxyuridylic Acid.ACS Symposium Series. Biochemistry Involving Carbon-Fluorine Bonds. 1976; 57-76.
    176. Kuntz ID, Zipp A, James T, pp. 499-503. ACS Symposium Series, Number 34. Edited by H.A. Resing and C.G. Wade. American Chemical Society, 1976.ACS Symposium Series. Magnetic Resonance in Colloid and Interface Science. 1976; 499-503.
    177. Zipp A, Kuntz ID, James T. An Investigation of "Bound" Water in Frozen Erythrocytes by Proton Magnetic Resonance Spin-Lattice, Spin-Spin, and Rotating Frame Spin-Lattice Relaxation Time Measurements. J Magn Reson. 1976; 24:411-424.
    178. Swett C. Outpatient phenothiazine use and bone marrow depression. A report from the drug epidemiology unit and the Boston collaborative drug surveillance program. Arch Gen Psychiatry. 1975 Nov; 32(11):1416-8. PMID: 978.
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    179. Stein JM. The effect of adrenaline and of alpha- and beta-adrenergic blocking agents on ATP concentration and on incorporation of 32Pi into ATP in rat fat cells. Biochem Pharmacol. 1975 Sep 15; 24(18):1659-62. PMID: 12.
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    180. Järvisalo J, Saris NE. Action of propranolol on mitochondrial functions--effects on energized ion fluxes in the presence of valinomycin. Biochem Pharmacol. 1975 Sep 15; 24(18):1701-5. PMID: 13.
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    181. Makar AB, McMartin KE, Palese M, Tephly TR. Formate assay in body fluids: application in methanol poisoning. Biochem Med. 1975 Jun; 13(2):117-26. PMID: 1.
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    182. James T. Nuclear Magnetic Resonance in Biochemistry. 1975; 413 pages.
    183. James T, McDonald GG.Measurement of the Self-Diffusion Coefficient of Each Component in a Complex System Using Pulsed-Gradient Fourier Transform NMR. J Magn Reson. 1973; 11:58-61.
    184. Blaedel WJ, Brower LE, James T, Noggle JH.Pulsed Nuclear Magnetic Resonance Measurement of Relaxation Times in Ion-Exchange Resins. Anal Chem. 1972; 44(6):982-985.
    185. James T, Noggle JH .23Na NMR Studies of Sodium Ion Interactions: Cysteine, Aspartic Acid, and Citric Acid. Bioinorg Chem. 1972; 2:69-74.
    186. James T. Photoelectron Spectroscopy. J Chem Educ. 1971; 48(11):712-718.
    187. James T, Noggle JH.Sodium-23 Nuclear Magnetic Resonance Studies of Sodium Aminocarboxylic Acid Complexes. J Am Chem Soc. 1969; 91(13):3424-2428.
    188. James T. Nuclear Magnetic Resonance Studies of Sodium Aminocarboxylic Acid Complexes. PhD Dissertation, University of Wisconsin, Madison. 1969.
    189. James T, Kula RJ.A Comparison of the Proton Affinities of Neutral Oxygen and Sulfur in Chelating Ligands. J Phys Chem. 1969; 73(3):634-640.