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Tina Perica, PhD

Title(s)Associate Specialist, Bioengineering
SchoolSchool of Pharmacy
Address1700 4th St
San Francisco CA 94158
Phone415-514-1368
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature. 2020 07; 583(7816):459-468. Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, White KM, O'Meara MJ, Rezelj VV, Guo JZ, Swaney DL, Tummino TA, Hüttenhain R, Kaake RM, Richards AL, Tutuncuoglu B, Foussard H, Batra J, Haas K, Modak M, Kim M, Haas P, Polacco BJ, Braberg H, Fabius JM, Eckhardt M, Soucheray M, Bennett MJ, Cakir M, McGregor MJ, Li Q, Meyer B, Roesch F, Vallet T, Mac Kain A, Miorin L, Moreno E, Naing ZZC, Zhou Y, Peng S, Shi Y, Zhang Z, Shen W, Kirby IT, Melnyk JE, Chorba JS, Lou K, Dai SA, Barrio-Hernandez I, Memon D, Hernandez-Armenta C, Lyu J, Mathy CJP, Perica T, Pilla KB, Ganesan SJ, Saltzberg DJ, Rakesh R, Liu X, Rosenthal SB, Calviello L, Venkataramanan S, Liboy-Lugo J, Lin Y, Huang XP, Liu Y, Wankowicz SA, Bohn M, Safari M, Ugur FS, Koh C, Savar NS, Tran QD, Shengjuler D, Fletcher SJ, O'Neal MC, Cai Y, Chang JCJ, Broadhurst DJ, Klippsten S, Sharp PP, Wenzell NA, Kuzuoglu-Ozturk D, Wang HY, Trenker R, Young JM, Cavero DA, Hiatt J, Roth TL, Rathore U, Subramanian A, Noack J, Hubert M, Stroud RM, Frankel AD, Rosenberg OS, Verba KA, Agard DA, Ott M, Emerman M, Jura N, von Zastrow M, Verdin E, Ashworth A, Schwartz O, d'Enfert C, Mukherjee S, Jacobson M, Malik HS, Fujimori DG, Ideker T, Craik CS, Floor SN, Fraser JS, Gross JD, Sali A, Roth BL, Ruggero D, Taunton J, Kortemme T, Beltrao P, Vignuzzi M, García-Sastre A, Shokat KM, Shoichet BK, Krogan NJ. PMID: 32353859.
      View in: PubMed   Mentions: 148     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    2. A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. bioRxiv. 2020 Mar 22. Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, O'Meara MJ, Guo JZ, Swaney DL, Tummino TA, Hüttenhain R, Kaake RM, Richards AL, Tutuncuoglu B, Foussard H, Batra J, Haas K, Modak M, Kim M, Haas P, Polacco BJ, Braberg H, Fabius JM, Eckhardt M, Soucheray M, Bennett MJ, Cakir M, McGregor MJ, Li Q, Naing ZZC, Zhou Y, Peng S, Kirby IT, Melnyk JE, Chorba JS, Lou K, Dai SA, Shen W, Shi Y, Zhang Z, Barrio-Hernandez I, Memon D, Hernandez-Armenta C, Mathy CJP, Perica T, Pilla KB, Ganesan SJ, Saltzberg DJ, Ramachandran R, Liu X, Rosenthal SB, Calviello L, Venkataramanan S, Lin Y, Wankowicz SA, Bohn M, Trenker R, Young JM, Cavero D, Hiatt J, Roth T, Rathore U, Subramanian A, Noack J, Hubert M, Roesch F, Vallet T, Meyer B, White KM, Miorin L, Agard D, Emerman M, Ruggero D, García-Sastre A, Jura N, von Zastrow M, Taunton J, Schwartz O, Vignuzzi M, d'Enfert C, Mukherjee S, Jacobson M, Malik HS, Fujimori DG, Ideker T, Craik CS, Floor S, Fraser JS, Gross J, Sali A, Kortemme T, Beltrao P, Shokat K, Shoichet BK, Krogan NJ. PMID: 32511329.
      View in: PubMed   Mentions:
    3. Evolution of oligomeric state through allosteric pathways that mimic ligand binding. Science. 2014 Dec 19; 346(6216):1254346. Perica T, Kondo Y, Tiwari SP, McLaughlin SH, Kemplen KR, Zhang X, Steward A, Reuter N, Clarke J, Teichmann SA. PMID: 25525255.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    4. Studying the Role of Protein Flexibility in Allosteric and Evolutionary Changes as Seen in PyrR Protein Family. Biophysical Journal. 2014 Jan 1; 106(2):466a. Sandhya P. Tiwari, Tina Perica, Yasushi Kondo, Stephen McLaughlin, Annette Steward, Jane Clarke, Sarah A. Teichmann, Nathalie Reuter. .
      View in: Publisher Site   Mentions:
    5. Environmental shaping of codon usage and functional adaptation across microbial communities. Nucleic Acids Res. 2013 Oct; 41(19):8842-52. Roller M, Lucic V, Nagy I, Perica T, Vlahovicek K. PMID: 23921637.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    6. Evolution of protein structures and interactions from the perspective of residue contact networks. Curr Opin Struct Biol. 2013 Dec; 23(6):954-63. Zhang X, Perica T, Teichmann SA. PMID: 23890840.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    7. Protein complexes are under evolutionary selection to assemble via ordered pathways. Cell. 2013 Apr 11; 153(2):461-70. Marsh JA, Hernández H, Hall Z, Ahnert SE, Perica T, Robinson CV, Teichmann SA. PMID: 23582331.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    8. Structural and Evolutionary Dynamics Facilitate Ordered Protein Complex Assembly. Biophysical Journal. 2013 Jan 1; 104(2):391a. Joseph A. Marsh, Helena Hernández, Zoe Hall, Sebastian E. Ahnert, Tina Perica, Carol V. Robinson, Sarah A. Teichmann. .
      View in: Publisher Site   Mentions:
    9. The emergence of protein complexes: quaternary structure, dynamics and allostery. Colworth Medal Lecture. Biochem Soc Trans. 2012 Jun 01; 40(3):475-91. Perica T, Marsh JA, Sousa FL, Natan E, Colwell LJ, Ahnert SE, Teichmann SA. PMID: 22616857.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    10. Evolution of oligomeric state through geometric coupling of protein interfaces. Proc Natl Acad Sci U S A. 2012 May 22; 109(21):8127-32. Perica T, Chothia C, Teichmann SA. PMID: 22566652.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    11. The interface of protein structure, protein biophysics, and molecular evolution. Protein Sci. 2012 Jun; 21(6):769-85. Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, Lakner C, Lartillot N, Lovell SC, Naylor G, Perica T, Pollock DD, Pupko T, Regan L, Roger A, Rubinstein N, Shakhnovich E, Sjölander K, Sunyaev S, Teufel AI, Thorne JL, Thornton JW, Weinreich DM, Whelan S. PMID: 22528593.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansAnimalsCells
    12. Ubiquitin--molecular mechanisms for recognition of different structures. Curr Opin Struct Biol. 2010 Jun; 20(3):367-76. Perica T, Chothia C. PMID: 20456943.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    13. Human Wrnip1 is localized in replication factories in a ubiquitin-binding zinc finger-dependent manner. J Biol Chem. 2008 Dec 12; 283(50):35173-85. Crosetto N, Bienko M, Hibbert RG, Perica T, Ambrogio C, Kensche T, Hofmann K, Sixma TK, Dikic I. PMID: 18842586.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCells
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