Yanxin Liu, PhD
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Title(s) | Associate Specialist, Biochemistry and Biophysics |
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School | School of Medicine |
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Address | 600 16th Street San Francisco CA 94158
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Phone | 415-476-5143 |
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ORCID
.gif) | 0000-0002-2253-3698  |
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vCard | Download vCard |
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Biography University of Illinois at Urbana-Champaign | Ph.D. | 2013 | Physics | Florida International University | M.S. | 2007 | Physics | Xi'an Jiaotong University | B.S. | 2004 | Applied Physics |
University of California, San Francisco | 2020 | | The Berkelhammer Postdoc Travel Award | UCSF Program for Breakthrough Biomedical Research | 2019
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| 2020 | Independent Postdoctoral Fellow Research Award | American Heart Association | 2018
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| 2020 | Postdoctoral Fellowship | Helen Hay Whitney Foundation | 2015
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| 2018 | Helen Hay Whitney Fellowship | Computers in Biology and Medicine, Elsevier | 2015 | | Outstanding Reviewer | Baxter International Inc. | 2014 | | Baxter Young Investigator Award-2nd tier | American Chemical Society | 2013 | | Chemical Computing Group Excellence Award | From Computational Biophysics to Systems Biology | 2013 | | CBSB13 Outstanding Young Researcher Award | Biophysical Society 56th Annual Meeting | 2012 | | Student Research Achievement Award | American Physical Society | 2007 | | Student Travel Award | Xi’an Jiaotong University | 2004 | | Outstanding Bachelor Thesis Award |
Overview ORNG Applications Bibliographic
Altmetrics Details
PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media.
(Note that publications are often cited in additional ways that are not shown here.)
Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication.
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An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike. Science. 2020 12 18; 370(6523):1473-1479.
Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, García-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A. PMID: 33154106.
View in: PubMed Mentions: 5 Fields: Translation: HumansAnimalsCells
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Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science. 2020 12 04; 370(6521).
Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, Kaake RM, Weckstein AR, Owens TW, Gupta M, Pourmal S, Titus EW, Cakir M, Soucheray M, McGregor M, Cakir Z, Jang G, O'Meara MJ, Tummino TA, Zhang Z, Foussard H, Rojc A, Zhou Y, Kuchenov D, Hüttenhain R, Xu J, Eckhardt M, Swaney DL, Fabius JM, Ummadi M, Tutuncuoglu B, Rathore U, Modak M, Haas P, Haas KM, Naing ZZC, Pulido EH, Shi Y, Barrio-Hernandez I, Memon D, Petsalaki E, Dunham A, Marrero MC, Burke D, Koh C, Vallet T, Silvas JA, Azumaya CM, Billesbølle C, Brilot AF, Campbell MG, Diallo A, Dickinson MS, Diwanji D, Herrera N, Hoppe N, Kratochvil HT, Liu Y, Merz GE, Moritz M, Nguyen HC, Nowotny C, Puchades C, Rizo AN, Schulze-Gahmen U, Smith AM, Sun M, Young ID, Zhao J, Asarnow D, Biel J, Bowen A, Braxton JR, Chen J, Chio CM, Chio US, Deshpande I, Doan L, Faust B, Flores S, Jin M, Kim K, Lam VL, Li F, Li J, Li YL, Li Y, Liu X, Lo M, Lopez KE, Melo AA, Moss FR, Nguyen P, Paulino J, Pawar KI, Peters JK, Pospiech TH, Safari M, Sangwan S, Schaefer K, Thomas PV, Thwin AC, Trenker R, Tse E, Tsui TKM, Wang F, Whitis N, Yu Z, Zhang K, Zhang Y, Zhou F, Saltzberg D, Hodder AJ, Shun-Shion AS, Williams DM, White KM, Rosales R, Kehrer T, Miorin L, Moreno E, Patel AH, Rihn S, Khalid MM, Vallejo-Gracia A, Fozouni P, Simoneau CR, Roth TL, Wu D, Karim MA, Ghoussaini M, Dunham I, Berardi F, Weigang S, Chazal M, Park J, Logue J, McGrath M, Weston S, Haupt R, Hastie CJ, Elliott M, Brown F, Burness KA, Reid E, Dorward M, Johnson C, Wilkinson SG, Geyer A, Giesel DM, Baillie C, Raggett S, Leech H, Toth R, Goodman N, Keough KC, Lind AL, Klesh RJ, Hemphill KR, Carlson-Stevermer J, Oki J, Holden K, Maures T, Pollard KS, Sali A, Agard DA, Cheng Y, Fraser JS, Frost A, Jura N, Kortemme T, Manglik A, Southworth DR, Stroud RM, Alessi DR, Davies P, Frieman MB, Ideker T, Abate C, Jouvenet N, Kochs G, Shoichet B, Ott M, Palmarini M, Shokat KM, García-Sastre A, Rassen JA, Grosse R, Rosenberg OS, Verba KA, Basler CF, Vignuzzi M, Peden AA, Beltrao P, Krogan NJ. PMID: 33060197.
View in: PubMed Mentions: 4 Fields: Translation: HumansCells
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General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM. Proc Natl Acad Sci U S A. 2020 09 29; 117(39):24269-24273.
Wang F, Liu Y, Yu Z, Li S, Feng S, Cheng Y, Agard DA. PMID: 32913054.
View in: PubMed Mentions: Fields:
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The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis. BMC Biol. 2020 01 27; 18(1):10.
Joshi A, Dai L, Liu Y, Lee J, Ghahhari NM, Segala G, Beebe K, Jenkins LM, Lyons GC, Bernasconi L, Tsai FTF, Agard DA, Neckers L, Picard D. PMID: 31987035.
View in: PubMed Mentions: 2 Fields: Translation: HumansCells
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Designed peptides that assemble into cross-a amyloid-like structures. Nat Chem Biol. 2018 09; 14(9):870-875.
Zhang SQ, Huang H, Yang J, Kratochvil HT, Lolicato M, Liu Y, Shu X, Liu L, DeGrado WF. PMID: 30061717.
View in: PubMed Mentions: 8 Fields: Translation: HumansCells
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Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1. Elife. 2017 07 25; 6.
Elnatan D, Betegon M, Liu Y, Ramelot T, Kennedy MA, Agard DA. PMID: 28742020.
View in: PubMed Mentions: 12 Fields: Translation: HumansAnimalsCells
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Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Science. 2016 Jun 24; 352(6293):1542-7.
Verba KA, Wang RY, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA. PMID: 27339980.
View in: PubMed Mentions: 78 Fields: Translation: HumansAnimalsCells
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Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations. J Am Chem Soc. 2015 Jun 10; 137(22):7152-7159.
Wirth AJ, Liu Y, Prigozhin MB, Schulten K, Gruebele M. PMID: 25988868.
View in: PubMed Mentions: 13 Fields: Translation: Cells
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Stable small quantum dots for synaptic receptor tracking on live neurons. Angew Chem Int Ed Engl. 2014 Nov 10; 53(46):12484-8.
Cai E, Ge P, Lee SH, Jeyifous O, Wang Y, Liu Y, Wilson KM, Lim SJ, Baird MA, Stone JE, Lee KY, Davidson MW, Chung HJ, Schulten K, Smith AM, Green WN, Selvin PR. PMID: 25255882.
View in: PubMed Mentions: 22 Fields: Translation: AnimalsCells
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Molecular insights into the membrane-associated phosphatidylinositol 4-kinase IIa. Nat Commun. 2014 Mar 28; 5:3552.
Zhou Q, Li J, Yu H, Zhai Y, Gao Z, Liu Y, Pang X, Zhang L, Schulten K, Sun F, Chen C. PMID: 24675427.
View in: PubMed Mentions: 11 Fields: Translation: HumansCells
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Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel. Elife. 2014 Feb 18; 3:e01834.
Wang Y, Liu Y, Deberg HA, Nomura T, Hoffman MT, Rohde PR, Schulten K, Martinac B, Selvin PR. PMID: 24550255.
View in: PubMed Mentions: 39 Fields: Translation: Cells
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Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment. J Am Chem Soc. 2014 Mar 19; 136(11):4265-72.
Liu Y, Prigozhin MB, Schulten K, Gruebele M. PMID: 24437525.
View in: PubMed Mentions: 5 Fields: Translation: Cells
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Flexible interwoven termini determine the thermal stability of thermosomes. Protein Cell. 2013 Jun; 4(6):432-44.
Zhang K, Wang L, Liu Y, Chan KY, Pang X, Schulten K, Dong Z, Sun F. PMID: 23709365.
View in: PubMed Mentions: 3 Fields: Translation: Cells
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Misplaced helix slows down ultrafast pressure-jump protein folding. Proc Natl Acad Sci U S A. 2013 May 14; 110(20):8087-92.
Prigozhin MB, Liu Y, Wirth AJ, Kapoor S, Winter R, Schulten K, Gruebele M. PMID: 23620522.
View in: PubMed Mentions: 16 Fields: Translation: Cells
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Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography. PLoS Pathog. 2013 Jan; 9(1):e1003132.
Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker TS, Schulten K, Zheng D, Pang H, Sun F. PMID: 23341770.
View in: PubMed Mentions: 42 Fields: Translation: AnimalsCells
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Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1. Proc Natl Acad Sci U S A. 2013 Jan 22; 110(4):1333-8.
Lai Y, Diao J, Liu Y, Ishitsuka Y, Su Z, Schulten K, Ha T, Shin YK. PMID: 23300284.
View in: PubMed Mentions: 46 Fields: Translation: AnimalsCells
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Structural Characterization of ?-Repressor Folding from All-Atom Molecular Dynamics Simulations. J Phys Chem Lett. 2012 May 03; 3(9):1117-1123.
Liu Y, Strümpfer J, Freddolino PL, Gruebele M, Schulten K. PMID: 22737279.
View in: PubMed Mentions: 17 Fields:
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Extension of a three-helix bundle domain of myosin VI and key role of calmodulins. Biophys J. 2011 Jun 22; 100(12):2964-73.
Liu Y, Hsin J, Kim H, Selvin PR, Schulten K. PMID: 21689530.
View in: PubMed Mentions: 6 Fields: Translation: HumansAnimalsCells
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Formation of salt bridges mediates internal dimerization of myosin VI medial tail domain. Structure. 2010 Nov 10; 18(11):1443-9.
Kim H, Hsin J, Liu Y, Selvin PR, Schulten K. PMID: 21070943.
View in: PubMed Mentions: 14 Fields: Translation: Cells
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Challenges in protein folding simulations: Timescale, representation, and analysis. Nat Phys. 2010 Oct 01; 6(10):751-758.
Freddolino PL, Harrison CB, Liu Y, Schulten K. PMID: 21297873.
View in: PubMed Mentions:
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Flow-induced beta-hairpin folding of the glycoprotein Ibalpha beta-switch. Biophys J. 2010 Aug 09; 99(4):1182-91.
Zou X, Liu Y, Chen Z, Cárdenas-Jirón GI, Schulten K. PMID: 20713002.
View in: PubMed Mentions: 6 Fields: Translation: Cells
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Stabilization of native and non-native structures by salt bridges in a lattice model of the GCN4 leucine dimer. J Phys Chem B. 2010 Jan 21; 114(2):796-803.
Liu Y, Chapagain PP, Gerstman BS. PMID: 20038147.
View in: PubMed Mentions: Fields: Translation: AnimalsCells
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The trigger sequence in the GCN4 leucine zipper: alpha-helical propensity and multistate dynamics of folding and dimerization. J Chem Phys. 2008 Nov 07; 129(17):175103.
Chapagain PP, Liu Y, Gerstman BS. PMID: 19045375.
View in: PubMed Mentions: Fields: Translation: Cells
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Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper. J Chem Phys. 2008 Jan 28; 128(4):045106.
Liu Y, Chapagain PP, Parra JL, Gerstman BS. PMID: 18248013.
View in: PubMed Mentions: Fields: Translation: Cells
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Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide. J Chem Phys. 2007 Aug 21; 127(7):075103.
Chapagain PP, Parra JL, Gerstman BS, Liu Y. PMID: 17718634.
View in: PubMed Mentions: 2 Fields: Translation: Cells
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The study of I-V characteristics of single electron triple-barrier tunnel-junction. Acta Physica Sinica. 2004; 53(8):2734-2740.
Yanxin Liu, Yongchang Wang, and Shaoyi Du. View Publication.
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Year | Publications |
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2004 | 1 | 2007 | 1 | 2008 | 2 | 2010 | 4 | 2011 | 1 | 2012 | 1 | 2013 | 4 | 2014 | 4 | 2015 | 1 | 2016 | 1 | 2017 | 1 | 2018 | 1 | 2020 | 4 |
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
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